RNA id: XM_021604989.2


Basic Information

Item Value
RNA id XM_021604989.2
length 1380
RNA type mRNA
GC content 0.54
exon number 4
gene id si:dkey-250l23.4
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41759479 ~ 41769211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccatgagagggacagggacagagaaagagacagccagagaaatagagaaagagagaccagagaccaagagagagagagagctagtgacTGGGATAgaaacagggacagggacagggacagagaggaccGGAGGGGCAGGACACAAAGCTTTCCAAACAGTAACTCTAACCCTCTTCAGACTAACACCATGGAGGCTCCAGAGGGTCAGGGGAGACTGCAGAGAGGACTACCCTCACCTGGACAACCCCACGCCAGTTACCAACGATCTAGCACCACCCTCAGGTCTCCACGCCAAGCCTCCGGCTCCATCTCTCCCACCCTACTCCGCCCATCCATCCGAATCAGAACCTCCACTCTGTCACCAAGGAGACTGCCGCAAAGGATGGACATCACGGAAACGCGATGTGGCATGTACACGGTTAGAGAGCCAGGTGCATTCTGGGTAGAGCCCGGGATTGGGATTGGCCAATTGTCCGAGAGAAGAAGGACTCAAACACGCCTCTTCTCCCACAGCAGCTTAGAGctggaagaggaagaggatgaggaagaagagggagaagaagaggaagaggaggagggaggagaggcagggggtaGTGGTGTGATAGGGGTGGTGACTCAGACGCTGACTACAGCTGTGCCCTTGTCCCCTGCTCCAGCAGCGATGGATAGGAGGATGACTaaaagagagaggaacaggatgaAGAGTCTGAGGAaaaggcagaggaggagagagagatggagacagagccaGCTGCTGGAGAATAGACAGAGTTCGACGGGGAACccatcgagcagcagtgaggaggaggatgatgtgaGTGCCAGGGACAGAGAGGGCTTCATCTGTGCTGTGTGTCTGGATGTTTACTTCAGCCCCTACATGTGCCACCCCTGTAACCACATCTTCTGTGAGCCCTGCCTCCGTACCCTGGCTAAGAACAGCCCAACCAACACCCCTTGCCCACTCTGCAGGACCACCATCACTCACGTCTTCTTCCAGACGGAGTTGAACCACACAGCACGGACGTTCTTCCCAAAGGAATACTTTTCCCGGAAACAGACCTTCCAGAAGGCAAGCTGTGCAAAATGGCCGCTCCCAAGCTGCAGGAAACTTTTCCGTATTTTTGGAGGTTTCCAGAGGCAAGCTAGTCCAATAGCCAGGCGTCAGTTTCCCCACGGGGGGTACCGTCTAGACGCCATGGACTTTGAGGACAATTCTCGCGGCTGGCGCTTTGACATTGACATGGTCATTATCTATATCTATTCTGTCAACTGGGTCATCGGCTTCATCATCTTCTGCTTTCTCTGCTACTTCTTTTTCCCTTCTTTCTAAagtcagatggatggatggatggatggatggatggatggatggat

Function

GO: NA

KEGG:

id description
K15708 RNF180; E3 ubiquitin-protein ligase RNF180

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU576940 lncRNA downstream 58352 41699983 ~ 41701127 (-) False G508222
TU577026 lncRNA upstream 48157 41817368 ~ 41817677 (-) True G508296
TU577029 lncRNA upstream 50242 41819453 ~ 41819779 (-) True G508299
TU577045 lncRNA upstream 57635 41826846 ~ 41827245 (-) True G508315
TU577046 lncRNA upstream 58103 41827314 ~ 41827549 (-) True G508316
TU577069 lncRNA upstream 72645 41841856 ~ 41842088 (-) True G508339
XM_021606533.2 mRNA downstream 6519 41735103 ~ 41752960 (-) True rgs7bpa
XM_021606531.2 mRNA downstream 188822 41566051 ~ 41570657 (-) True c6h5orf51
XM_021606529.2 mRNA downstream 193486 41562084 ~ 41565993 (-) True fbxo4
XM_036980133.1 mRNA downstream 193501 41562084 ~ 41565978 (-) False fbxo4
XM_021606524.2 mRNA downstream 219329 41474979 ~ 41540150 (-) False ghra
XM_021606535.2 mRNA upstream 120648 41889859 ~ 42124064 (-) False ipo11
XM_036980135.1 mRNA upstream 120648 41889859 ~ 42124064 (-) True ipo11
XM_021606537.2 mRNA upstream 360007 42129218 ~ 42138980 (-) False dph7
XM_021606536.2 mRNA upstream 360007 42129218 ~ 42139055 (-) True dph7
XM_036980140.1 mRNA upstream 377291 42146502 ~ 42241438 (-) False LOC110525987
TU576563 other downstream 297557 41421024 ~ 41461922 (-) True G507906
TU576567 other downstream 320465 41434975 ~ 41439014 (-) True znf131
TU575676 other downstream 1217150 40540659 ~ 40542329 (-) True G507063
TU575349 other downstream 1869548 39887022 ~ 39889931 (-) True G506785
TU575314 other downstream 1921319 39837648 ~ 39838160 (-) True LOC110525932
TU577033 other upstream 51644 41820855 ~ 41821210 (-) True G508303
TU577652 other upstream 374886 42144097 ~ 42144885 (-) True G508891
TU577801 other upstream 603230 42372441 ~ 42403220 (-) False G509034
TU578229 other upstream 874308 42643519 ~ 42645869 (-) True G509432
TU578716 other upstream 1307481 43076692 ~ 43077157 (-) True G509902

Expression Profile