RNA id: XM_036980135.1


Basic Information

Item Value
RNA id XM_036980135.1
length 4604
RNA type mRNA
GC content 0.47
exon number 25
gene id ipo11
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41889859 ~ 42124064 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCACTATTGTACGTCATCAAAACGCGTCTTGCTTGCTGTGGATCGCGCCCTTCCAAGCGACAGCGTGTGCGTTTGTAGCTGCGAACAGCTGACACAAGATTAGTCAAGTTTCAGTGTTTCTATCAAGATATCATTTCTTAGGCGTCTCTAGGTATGGATATGGAGAGTGCCAGCTCGGTGGTCCTACAGGCCCTGACCCAGGCCACCAGTCAGGATACCGCTCTACTGAAGCCTGCTGAGGAGCAGCTACGACAGTGGGAGACACAACCTGGCTTCTATTCTGTACTGCTGAATAtcttcaacaaccacatgttggATGTTAACGTCCGATGGCTTGCCGTGCTCTACTTCAAAAACGGCATCGACAGGTACTGGAGGAGAGTCGCGCCAAAtGCTCTGTCAGAAGATGAGAAGACGTCGCTGCGAGCTGGCCTGATCACCAACTTCAACGAGCCCGTCAACCAGATAGCCACCCAGATAGCAGTGCTGATAGCCAAGGTGGCTCGTCTGGACTGTCCCCGCCAGTGGCCAGAGCTGATACCCATCCTGCTTGAGTCAGTGAAGGGTCAGGATGGGCTGCAGCAGCACAGGGCTCTACTCACCTTCTACCACGTCACCAAGACCCTGGCCTCCAAGCGCCTGGCCCAGGACAAACGACTGTTTCAAGACCTGGCGTCGGGCATCTACAGCTTTGCCTGCTCCCTGTGGAGCCACCACACAGACTGCTTCCTCCAGCAAGTCCTAGCCGTGGATCAGGCCCATGCCCTCAGCTCACTGGAGAGGACTCTACTGTCACTTAAAGTACTTCGGAAGCTGACGGTCCATGGATTCCAGGAGCCACAACAGAATATGGAAGTGATGGGCTTCCTCAATGCAGTTTTTGAGAGACTGAAACAGTTCCTAGAATGCAGTCGGCAGGTAGACCCAGACAGCCCATGTCGAGAGAAGCTTGAGAAGACTATCATACTGTACACTAAAGTGttattagATTTCCTGGAGGTCCACCCGTGTGCGTTCATCCCACTGATCCAGCGCTCTCTGGAATTTGCTGTCAGCTACGTGTTCACGGCGGCCGGTGAGGGCCTCGTCTTCGAGCGCTTCACCGTCCAGTGCATGAACCTCATCAAAACCATCGTCAAGAACGAGGCCTACAAACCCTGCAAGAACATCGAGGACAGTAAGCCGGAGAGTCTGGAGGCCCACAAGATCAAGACTGCATTCTTTACACACCCCACCCTCACAGAGATCGGACGGCGTCTCGTCTCCCACTACTTTCTGTTGACCAAGGAAGAGCTGGCCATGTGGGAGGAGGACCCCGAGGGCTTCGCTGTTGAAGAAACAGGGGGTGACTCCTGGAAATACAGTCTACGGGTGCGGATCGAGACGGCCACAACTCTGAAACTCACTGTCGACGACTTTGAGTTCCGGACAGAACAGTTCTTACCGTATCTGGAGTCTATTTTCAGCCTGCTATTCCAGCTGTTGCAGCAGGTGACAGAGTGTGACACTAAGATGCAGGTCCTCCATGTGATCTCATGTGTCATTGAGAGGGTTAACATCCAGATCCGGCCATATGTAGGCTGTCTGGTCCAGTACCTGCCACTGCTTTGGAAACAATCAGAAGAACACAACATGCTGCGCTGTGCCATACTCACCACACTGGTTCACCTTGTACAGGGCCTGGGGGCGGAGAGTAAGAACCTGTATCTCTTCCTGCTTCCTGTGATCCAGCTGAGTACAGATGTCTCGCAACCACCGCATGTCTACCTGCTAGAGGACGGACTTGAGCTGtgGTTGGTAACGTTGGAGAATAGTCCGGCAATCACCCCAGAGCTGCTGAGAATCTTCCAGAACATGTCGGCTCTCCTGGAGATGAGCTCAGAGAACCTGAGGACATGCTTCCAGATAGTCAACGCCTACATCTACCTGTCAGCTACTGACTTCCTACAGAACTATGCTGAGGGCCTGTGCAGATCCTTCTGTAATCTACTCAAAGATATCACCAACGAAGGACAAGTCCAAGTTctgaaggtggtAGAAGTAGCTCTGAAGGTTAGCCCCGTGTTAGGAGCCCACATGTTCCAGCCCCTGCTGCCTTCTGTCTTCAGAGGGATCGTGGATGGAGAGcggTACCCGGTGGTGATGTCCACCTACCTGGGAATCATGGGAAGAGTCCTGCTGCAGAACGCtagtttcttctcctctctcctcacacagatGGCCAGCGAGTACAACCAGGAGaTTGGCCAGTTGTTAGGTGGTGTGATAGAGATGTGGGTTGACCGCATGGACAACATCACACAGCCGGAGAGGAGGAAACTGTCGTCTCTGGCTCTGCTCTCCCTCTTACCGTCAGACAACAGTGTGGTCCAGGAGAAGTTCTGTGGCATCATCAACATCTGTGTGGAGGCGCTGCATGACGTGATGACAGAAGACTCCGACACAGGAACCCTCAAAGACTGTATGTTGATGAGCCATTTCGAGGAACCCAAGCTGACTGACGATGAGGAGCCTCCCACAGAACAGGACAAGAGGAAGAAACTGTTGGCCCTGGAGGATCCGGTGCACAGTGTCTCCTTACAGCAGTATGTGTATGAGAAGCTGAAGGCCCAGCAGGCTCTGATGGGGGACCAGGGCTTTGGGGCTCTGATGGAGACGGTGGACACAGAGATCGTCAGGCAGCTCCAGGAGTTCCTACAGGGCctctgagagagatggagagaggagagactctACCTATCTCTACCCTTTCCCTCCTGTAACCTCAATGCATCCATCTCCAGACCTATACTATCTATCTCTCCTGATAGGCCTTTAGAGAGCACAGGAGAGAAAAGACCTCAACCTCTGCCCCCTACTAACCATCTCGGCTGTACCTTATCCGTAGCCTACCTTTCCTCTCCTCGACCCCCTATTGGGCACGGAAGAGAGAGGACTGCAACATGTACCTCTACTACCCATGTCTACTTTTACCCATAATTCACTTGTCCTTTACCCACAACCCCCTCTTCTCTACCAAACCCTACCCTAACTACAACCTACCTAGAACCTTCCTTTACCCACAAaccacctttttttttttaaacacacacagaaacatgaaTAGAGCTTCCATTCTAACAGTTATTCTGCTTCTCTAGTTTTAGCATGGGGTAAATACTTAGGAGGATGTTAAGAGACGGGGGATTGAGGGAATATAACAATACGACACAAAGACAACCTTCTGAAGAGGCAGGAgccttggattttttttttttttttactgggaAAGCGTGTGTGGCGTGATGGGAATATGGCTTCACTGACCGAAAGACCCAAACAGTGTTTACAGATCAATTCTTAAAGGCGAATAGCGAGCAAAAGTGTactttgtatgtatgtatgtatgtaaagtATGGATGACTCTGCATGAAGATATTTAACTTTTtagtttagctagctaatttCTCTTCATGGTTCTTTGTTCTGTATTGTTTCTCACACCCTGAGATCATCAAGTTGACAGGACTATTGAGAGATGCAGACACTGTTTTTGGGGCGTGTATATTTTCATATCATCGGACTATGAATTCAATTAATTGACTGCGAGATTAAAGCGATTTTTAacaagtgatttgtaaaagtgtTGAACCACATTTCTATATGAATGCTGCTGCTATTTTACGGTGTGTCACAAGGTGTGTCAGAGCACTTTAAaaacaaaactttttttttttcccccatttgTTTTATCTTCCTGAAATGTCATGGTTCTTCATGTCTCATGGTTGTAGCATGACGGTAGAAGAACTCGGGACATTGAAGCAGGATGGAAGTTATTCTTAGGCACAAATCTAGGATCAGCTAACCCCACTCTAATCCTACCCATTAGGGGTGGAAAAGCAAAACTGACCTCTGATCAGCATCTTGGGGCAACTTGATCCTACTCCCGGTTGTGTATGAAATGCCATATAATCATATTGAGGACATACATAAACTGAAGCGTGATTTGAGTGATGTTTTGGACAGAAACCGTTTTTCACAGGGATGACAGTGGACTAGAGAATCGGTTGCACTTCATTTAATGGTACATAAATGTCCATTGTCCAAACATTGTAATTATACAATAAGCTAGGAATGACTCTTCTTTGATATTCATTCGAACAAGCACCACTACCACTTGGTACCAGCCAGATGCAAATTGTGTTGAATTATTTGAAATAAATACCAGAAAGTAGCCATTGTTACCACGTAATAATCCTAGTAAATACAGTGGAAACTGGACTGTAAAATAAAGTGTTATCCAATTCTCTTCCCCTAGTTCCATAGACACTGTGATTGAGTTCAGTAGCAGTCAAGCAAAACAAAGGCCTTATGCTTTCAGCCTTACCTTAATTCTAATATCCTTTCTTTCCAATGTtgctttttttatatatatatatataaatatatatatatatatatatatatatattagctgATTTCTGTACTGGTATTAGAATGATGGGAGCAATGGTGACATTGAACACAACAGCAGTAGAAAATATGTCTTTAGCTAAATTCTAATAGAAAGACCTTGTTCTTTTTTTCAACAGCTTCAATAAAATGCAGTACATGGCTGAAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K25201 IPO11, RANBP11; importin-11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU577496 lncRNA downstream 26725 41862918 ~ 41863134 (-) True G508747
TU577492 lncRNA downstream 31281 41858277 ~ 41858578 (-) True G508743
TU577491 lncRNA downstream 31855 41857774 ~ 41858004 (-) True G508742
TU577069 lncRNA downstream 47771 41841856 ~ 41842088 (-) True G508339
TU577046 lncRNA downstream 62310 41827314 ~ 41827549 (-) True G508316
TU577645 lncRNA upstream 18319 42142383 ~ 42143840 (-) True G508888
TU577814 lncRNA upstream 262009 42386073 ~ 42386706 (-) True G509045
TU577803 lncRNA upstream 274912 42398976 ~ 42402230 (-) True G509034
TU577804 lncRNA upstream 286263 42410327 ~ 42417077 (-) True LOC118964871
TU577827 lncRNA upstream 293761 42417825 ~ 42418041 (-) True G509058
XM_021604989.2 mRNA downstream 120648 41759479 ~ 41769211 (-) True si:dkey-250l23.4
XM_021606533.2 mRNA downstream 136899 41735103 ~ 41752960 (-) True rgs7bpa
XM_021606531.2 mRNA downstream 319202 41566051 ~ 41570657 (-) True c6h5orf51
XM_021606529.2 mRNA downstream 323866 41562084 ~ 41565993 (-) True fbxo4
XM_036980133.1 mRNA downstream 323881 41562084 ~ 41565978 (-) False fbxo4
XM_021606537.2 mRNA upstream 5154 42129218 ~ 42138980 (-) False dph7
XM_021606536.2 mRNA upstream 5154 42129218 ~ 42139055 (-) True dph7
XM_036980140.1 mRNA upstream 22438 42146502 ~ 42241438 (-) False LOC110525987
XM_036980143.1 mRNA upstream 22438 42146502 ~ 42241438 (-) False LOC110525987
XM_036980141.1 mRNA upstream 22455 42146519 ~ 42241438 (-) False LOC110525987
TU577033 other downstream 68649 41820855 ~ 41821210 (-) True G508303
TU576563 other downstream 427937 41421024 ~ 41461922 (-) True G507906
TU576567 other downstream 450845 41434975 ~ 41439014 (-) True znf131
TU575676 other downstream 1347530 40540659 ~ 40542329 (-) True G507063
TU575349 other downstream 1999928 39887022 ~ 39889931 (-) True G506785
TU577652 other upstream 20033 42144097 ~ 42144885 (-) True G508891
TU577801 other upstream 248377 42372441 ~ 42403220 (-) False G509034
TU578229 other upstream 519455 42643519 ~ 42645869 (-) True G509432
TU578716 other upstream 952628 43076692 ~ 43077157 (-) True G509902
TU578766 other upstream 998482 43122546 ~ 43123092 (-) True G509949

Expression Profile