RNA id: XM_021606537.2


Basic Information

Item Value
RNA id XM_021606537.2
length 2430
RNA type mRNA
GC content 0.48
exon number 9
gene id dph7
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42129218 ~ 42139055 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAATTTATTTATCAGAATATATGTTGATCTGCAAACAAATATAGCTTATTGGGATATTATGTGCGTTGGAATTCAATCGAAATAATATAGTTGGAACTGTGTAGCTAGCTAAATGTTCGTCTAGGCGCCTGTTGCTAGCGAAGTAGGGAGGTAAATTATAGCCTGCTAACAGTAACGTTAGTGCTGGTTTTGCTAAATATGTGCGCTAGCTGGAGGCTAGCTTGTTTATGTTGCATGTATCTCAACCAgcagttaaatagttagttagctagctagttaactaatATTTGATCCAATCCTATGTTACCCGTGTTCATGTTGTTGATGGTGGGCTGTGTTGTCTTGGCATACTAATTGTTGACACTGTCCATATTTGCATATTTGACTGGTGCTTTGGTCCAGTAATATGCAGAACATATTGCGATGGCTTGGAAGTCAAGGACCCGCAGTCTTCAGGTGTTAGACACAGAGCTGAGTGCCGACACAGTGGAGTGGTGCCCCATCCCAGAGTGGCACAACATACTGGCATGTGGAACATATCAACTGCAGAAAGGGCCAGATGCGGGACCAGAGGACGCGGCTACTCGGATTGGCCGACTGTACCTGTTCAAGTTTCGTCAACAAGGACCTATGTGTCCGCCCCTCAGTGAGCTGCAGCGGATTGACACACCAGCTATATTAGATATAAAATGGTGTCATGTGCCAGTGTCAGAGAAGCCTCTGTTGGGCATGGCTACAGCCAGTGGGGAGCTACAGCTGCACAGACTCATAGAGAGTCAGGAAGGCCGGTGTGCTCTGCAGACTGTGACCAGTTTGGGACTGGGACCTGATAAGTTGGCTCTGTCATTAGACTGGTCCACTGGAAGAGGTAACAGTAGTGACGTGCGTGTGGTGTCCAGTGACTCTGCAGGCTGTGTCAACGTCTTGTCCCTGGGGGAGAACAGTCTCACTGCTGTATCACAGTGGAAGGCCCACGACTTTGAAGCCTGGATCTCAGCATTCTCATACTGGGATACTCAGCTTGTCTACTCCGGTGGGGATGACTGCAAACTTAAGGGATGGGATCTCAGGATGGGTCCCTCTTCCCCCACATTCACCAGCAAGAGGCACTCGATGGGTGTATGCAGTGTACACAGTAGCCCACACCGGGAGCGCATTCTAGCCACAGGCAGCTATGACGAGCAGGTGCTCCTGTGGGACGAGAGGAACATGCGTCAGCCTCTCAGTGAGAGTGCTCTGGGTGGCGGAGTGTGGAGACTGAAGTGGCATCCTACCCATGAGCACTTGCTGTTGGCTGCCTGCATGCACAACGATTTCCACATCCTTCACTGCCAGcaagctctggAGGGCAGCGGAGGAGCGTGTTCTGTCCTAGCCTCCTATATCCTCCACAATTCCCTGGCCTATGGGGCTGACTGGTCCCAGCTTTCCCTGGAGGAGCCTCCCCCCTGCTCCCCTCTGGAGACCACAGAGTCAAGACAGTCCCAAACAGAGAGCCGTACAGGAGGACACCTAAGGATTCAGTATGAATCTCCCACTGCCAGCTTCGACACCTCCTTGGAGGATGACTCAGGACGTTACATACCTGAGAGTTTATCCCCGTCATCTGCTAGCTCTGTGGCAGGCCCACCTGCCTGTCCTAACCCTGCCGTGGACAGCCCTGCAGTGTCCTGCCTGATGGCCAGCTGTTCCTTCTATGACCACATGCTTCATGTGTGGCGCTGGGACTGGACCCCACAGGAGGCAGGCTGCACTGGGACGGcccagggggagggagaaagaagggcTGTTGGTGAAGGAGATGGTGGCCAGGCAGTAGCACCAGCAAAGTATGCAAAGTGCACTacacgtagggaatagggtgccgatTGGAATGCTGCCGAGGTTTGGAGACATGTTTTTGCTTATTGGCCAAGCCCATTAAATCAGGAGGCAAAGACCGAAGAATGCATATGATATCTCACCATAGCGGTCTCTCACTACTACTAGAGGAATATTCACCTTCAAACAAAAACCACAAATAacattttttgaattttttgaatGTCAATtgttgcaaaaatgtcaaatgtttacCTTTCTGTAAACATTATGCTTTCGTTCCAATACTGCACACATGATGCGAAAGCACCTGGCATTTATTCAACCTTTCTTGGATAAAATAGGCGTACTTTGAATCACTTGCAGATATCTGAACTATTTATGATTGTGCGATCAATATCATTCCACCCTGATTTAATAATGCATTTTAATGAAAAACCAACACCTTTTAGGTCAGTATACATATTGGATCTTAAAGATTCCCTGATAAGTGGGTCATGGATTTGTTATAACTGTTACAATGCAGGAAAAACATTTGTTTAATCCACTTGTACAATTTGTTCTTTCACGTGTATACTTTTTTGAGCAATACATTTGCTGTGTTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU577663 lncRNA downstream 8827 42120186 ~ 42120391 (-) True G508902
TU577660 lncRNA downstream 13476 42115494 ~ 42115742 (-) True G508899
TU577638 lncRNA downstream 25704 42103030 ~ 42103514 (-) True G508884
TU577636 lncRNA downstream 27068 42101869 ~ 42102150 (-) True G508882
TU577630 lncRNA downstream 32218 42096757 ~ 42097000 (-) True G508876
TU577645 lncRNA upstream 3403 42142383 ~ 42143840 (-) True G508888
TU577814 lncRNA upstream 247093 42386073 ~ 42386706 (-) True G509045
TU577803 lncRNA upstream 259996 42398976 ~ 42402230 (-) True G509034
TU577804 lncRNA upstream 271347 42410327 ~ 42417077 (-) True LOC118964871
TU577827 lncRNA upstream 278845 42417825 ~ 42418041 (-) True G509058
XM_021606535.2 mRNA downstream 5154 41889859 ~ 42124064 (-) False ipo11
XM_036980135.1 mRNA downstream 5154 41889859 ~ 42124064 (-) True ipo11
XM_021604989.2 mRNA downstream 360007 41759479 ~ 41769211 (-) True si:dkey-250l23.4
XM_021606533.2 mRNA downstream 376258 41735103 ~ 41752960 (-) True rgs7bpa
XM_021606531.2 mRNA downstream 558561 41566051 ~ 41570657 (-) True c6h5orf51
XM_036980140.1 mRNA upstream 7522 42146502 ~ 42241438 (-) False LOC110525987
XM_036980143.1 mRNA upstream 7522 42146502 ~ 42241438 (-) False LOC110525987
XM_036980141.1 mRNA upstream 7539 42146519 ~ 42241438 (-) False LOC110525987
XM_036980138.1 mRNA upstream 7679 42146659 ~ 42241438 (-) False LOC110525987
XM_036980139.1 mRNA upstream 7679 42146659 ~ 42241438 (-) False LOC110525987
TU577033 other downstream 308008 41820855 ~ 41821210 (-) True G508303
TU576563 other downstream 667296 41421024 ~ 41461922 (-) True G507906
TU576567 other downstream 690204 41434975 ~ 41439014 (-) True znf131
TU575676 other downstream 1586889 40540659 ~ 40542329 (-) True G507063
TU575349 other downstream 2239287 39887022 ~ 39889931 (-) True G506785
TU577652 other upstream 5117 42144097 ~ 42144885 (-) True G508891
TU577801 other upstream 233461 42372441 ~ 42403220 (-) False G509034
TU578229 other upstream 504539 42643519 ~ 42645869 (-) True G509432
TU578716 other upstream 937712 43076692 ~ 43077157 (-) True G509902
TU578766 other upstream 983566 43122546 ~ 43123092 (-) True G509949

Expression Profile