RNA id: XM_021606539.2


Basic Information

Item Value
RNA id XM_021606539.2
length 3308
RNA type mRNA
GC content 0.39
exon number 7
gene id paxx
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42137053 ~ 42143608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAACGTTGCACAATGTTACATAGACGTGGGGTATCACTAGCCACCCACTGGCAACCACACACAGTGGATGTTCCCTGACCATCAGCTCATGCCCACACCAACACAAAACATGGATGGAAATCTACCGTTGACCCAATCATCGTATTGCACCGTGGTAGATAAAAAAGACCAATCTAAACTAATATGCTACACGCATACAACATCTGGGATATTCAATGTTGGCTTGACAAATGCCTTTGATGTGTGGAGCACAGATTTCACCGAGGAGACATTGAACCAGTTTAGACAGAAGTTTGCCTTAAAGTCAACAGAGGATTATATCCTGAAaatcagGTCTGCGTGTGGGAGTGGGAGTGTGTCGGTATCGGTGGAGGACACCGATGCAGTGCTCTATTTAGCGGCCAGTCCAGGAGACCTGAGTGTGACTCTGTCCAGACTAAAAGAACAAGAGGCTAAAGAGGTCCTGAGAGAGCTGCTGTTTAGAATGGCAGACAGCCTGACCCATTTAAACAATACTGCAGGCCCTGCCTCATTCAGTCCTGGGAAGAGTCCGCACAAACGGAATACAGACTTTGAGCCAAGGAGACACCAGCAGAGTGGCCAAACTATGGCAGTCAAGAAGCGTCTCCCAGGAGATTCTCTCATCAACCCAGGAACTAAGAGAAAGCGTCAAGCAACCGGGGTGGCATTTGATGAAGAAGACGATCAATGATAATTTGCTAAGAGGAATGACCACAGTTGCTTTCCATCCTTGCTGTCACATTTCTCCAGCATACAAACAATATAGTGCATGAATGTTCTTTTAATCCACTAACACTAAGCCATACAGCTTCAACAaaaaatcccaaatggcactcattccctatttggtgcactacttttgaccagatccctatgggtcatgattaaaagtagtgcactatatagggtgcctgtttaaaagtagtgcactatatagggtgcaaTTTTAGACGCACTCATTATCATTACCTCAATCACTGTGGGAAGACTTGAAACATGTCTTCCCCCAAAAAATTCTCCCCAATTTTCGTGgtattcaattggtagttacagtcttatctcatcgctgcaactcccgttacggactcgggagaggcgaaggtcgtgAGCCGTGCGTCGTCCGAAACGCAAccaaaccaagccgcactgcttcttgacacaatgcccgcttaacccggaagtcagccgcaccaatgtgttggaggaaacaccgtacacctggcgactgtgtcagtgtgcattgcgcccggcttgccacaggagtcgcttgtGCGCaaagggacaaggacatccctgccggccaaaccctccactaacccggacgcagctgggccaattgtggaccaccgccccatgggtctcccggctgcaacagagcctggactcgaacccagaatctctagtggcacagccttagaccactgcgccactcaggaggctcaTATTTGAATCTTTTAACTTTATAATAAGCATGACTTTTTAAAGCCATTCTCCTTGTCCAATCATTCATGTCGATTTgttctaataatatataataatactttttaaCAAGTTAGTCAAATCTGCTCAGGAAACCATGAAATTGATAGTGTATATCAGACTGATTCTCATATCTTTATTGTTAGCAAAATGACTGCAAGCCTTCAAAGAGCATGCACAGTAAAATATTTGGTTCTAATACCTAATGTTGAAGGTAGCTACTAGAATACTATAATTAAATGCATGATTAAAACCATAGATAAAAATAACCCAATTGATACCTGAtttatttgtcatttttttgtttaaAAATCCAGATCACCCAACGTGAAGCACAGAATACAGAAACAACAGTAGATTCAGCAACAAGTCCAAATGTAACGCAAGAAGAACAAATATGAACAGATGCTTTACAACAGAAAAATGTCAGACACATTTTcataaaatatatagatatatattatatTCAGATGCACACATACACTACCTGGGTAAATTCCAATGCATTTTCGCTTTAGAGCAAAGCCAAGTAATCactagattgatgaagaaaaaaaaaatctcatcGTATTTGCACCCATGTAGAATTGCACCCAATTCTCATATTTGCTggtgttgtttaaaaaaaactgtttgttttacttttactccagagACCTTTGAACGATAAGTTCTTGtcaattttacattttttttaattttttaaatcaaGCTTTTTTTTGCTCAGGGAAACTTCAAATACATGTTTAAGTATTCAGAGATGTTGGGTGGCAACAACAGTTGCAATAGATCAAATAATGATCAAAACCATCTAAAATGGTTCTAAACCACATCGCTGTTCCTTTGAGGTCCAGAGTCACAGAACTCTAGTTAAAGCAGAGCATCACGGTCATCATTTAGCCTTGAGTTAAAGGACACAAGTTAACCTCAAGTTCATTACATCTTTCCTCACAGCTTTTCAGCTCCCAACATATACAGGTAGCATTAATTAACACATTTCAAAGACAGGCTTGGTTTCTCATTCTCATATTAGTCCACATGAAAAATCATAATTTTGTCCTGGACTTCAGTAAAACATTTCACCTACTTTACATTCTGAGGAAAACAAATTACAACAATTAGTTTCCTTGTTTAATAGTAAAAGGATAACAAACACCCCAGtcaagatatttttttttttcaaataagTCCAAATAGGTCACCCATTAAGAAATCAATGTGTTCAATTACATAGAATTAGTCCACGAAATAACTTAAGCAATTTCTGAGAGGAATTAAGAGAGATCACAACTATATCTTTACAAAACAAACACCCCATGAACATATCCATTTCAAATCACATGGCAACATACATATTCAGGACAAACATTTCTCTTCATTAATGACGTGGTGTGGGTGTTCTTCAAAATTCCTAATGTGCTCCAACTTCCAAAAGAAATAGTCAGCAGACTTGAAAGCATCTTGTAAATCATACAATCTCAAGTACAaactaaacaatgatcagaaagtTCAACTTCTTTTTCTCACAGTGATGGTAGTGCAGTAGTGTATGCTTATTATTGTAAATCCTGTATGTGTCCTTTCTTATAGGTATTACAGGATATAATTATTATTAAGTTCAGTTCTTTTCACGGTTTTTGGATTACTTAAATTATCTTGTTGATTACCTTCATTGTAAAGTAAGTTATTACATGGTGTCCAACATAGGATCTTGTTGAAAGAAACAAATCATTATGATTTGTAGAAGCACACAATTCAGCATTCAGTAGAAAGTGCTCTAATTATCATGTCGAGACAAAAATATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU577300 lncRNA upstream 11471 42125122 ~ 42127597 (+) True G508562
TU577288 lncRNA upstream 15042 42123517 ~ 42124026 (+) True G508554
TU577276 lncRNA upstream 33976 42104868 ~ 42105092 (+) True G508542
TU577273 lncRNA upstream 38234 42100627 ~ 42100834 (+) True G508539
TU577271 lncRNA upstream 39800 42099061 ~ 42099268 (+) True G508537
TU577299 lncRNA downstream 443 42144051 ~ 42145233 (+) True G508561
TU577294 lncRNA downstream 1799 42145407 ~ 42147244 (+) True G508558
TU577424 lncRNA downstream 176284 42319892 ~ 42332493 (+) True G508677
TU577466 lncRNA downstream 228356 42371964 ~ 42372193 (+) True G508717
TU577829 lncRNA downstream 275113 42418721 ~ 42418976 (+) True G509060
XM_021606534.2 mRNA upstream 365113 41771717 ~ 41773955 (+) True htr1aa
XR_005052109.1 mRNA upstream 381865 41754679 ~ 41757203 (+) True LOC118964870
NM_001124407.1 mRNA upstream 409687 41723173 ~ 41729381 (+) True c7a
XM_021606530.2 mRNA upstream 438947 41678773 ~ 41700121 (+) True plcxd3
XM_021606528.2 mRNA upstream 461395 41576211 ~ 41677673 (+) True oxct1a
XM_021606542.2 mRNA downstream 100897 42244505 ~ 42249266 (+) True LOC110525988
XM_021606545.1 mRNA downstream 228923 42372531 ~ 42415108 (+) False stxbp1b
XM_021606548.1 mRNA downstream 228923 42372531 ~ 42415108 (+) True stxbp1b
XM_036980149.1 mRNA downstream 459700 42603308 ~ 42643804 (+) False camsap1b
XM_036980147.1 mRNA downstream 459701 42603309 ~ 42645904 (+) False camsap1b
TU577295 other upstream 7128 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 667660 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 1279546 40568726 ~ 40859522 (+) True fbxl17
TU574820 other upstream 1572639 40566067 ~ 40566429 (+) True G506285
TU574816 other upstream 1591555 40544863 ~ 40547513 (+) False G506281
TU577938 other downstream 423497 42567105 ~ 42569384 (+) False G509160
TU577937 other downstream 423640 42567248 ~ 42570169 (+) True G509160
TU579244 other downstream 1513860 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 3040831 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 3074119 45217727 ~ 45220782 (+) False LOC110526028

Expression Profile