RNA id: XM_021606543.2


Basic Information

Item Value
RNA id XM_021606543.2
length 3268
RNA type mRNA
GC content 0.45
exon number 9
gene id npdc1b
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42252483 ~ 42301749 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGACAGACAGCAGCCCTGCCCTCACTCGTTTCTTCAACCGTCACACATAAAGCGACATAATGGGATCCTGCGCAAAACACATAGCAGACGAAATCGTTGACCAGCGCTTTATTACCGAATCTGGTTCTTGCAACTGAGCGCCTTTTCTACTCCGCATTCTGAATACATATTTACAAAAGCTGAGCACCTTTCCAAAGCTTCTTTCTGTTCTAAGGGGATGGGGGAATGATCAACCCCGACTCCCCAGCTCAGTTGTATCAGTTGTAAGAGCGCTTTGCAGTATGCCATCCCCGAGAAGAGGTGTCGATCACCGACCGAGAACCGCCGCCACGCTTCTAACCCAGGTTGCTGTCTTTGCAACCTTCGTTGCTATGAGCGCATGCATGCCAGGGTCTTCTTCAGTATGCCCGCGGAGCTTAGACTGTGCCAGAGCAGGGCGTCATTTCTGCCAGCCGGGCAGCTCACACTGCGGCCCCTGCCTCAACCCGCTGGTAGAGAACTCACATGGCAGATGCATAGTGAAGAGGAGACATGCTCACGCCCCCCATTTTGCGGGAAAAGTGACCACGTTCCCTGAAGTGGATGAGGAGATAGACTTCCTGTCCACCATCATCAGCCAACGGAAGGAGTCGGGGGTCAAACATCCAGctcctctctctcaggATTTTTCCAAAGCCGAGGAGGAAGATGACCCATCCATGATCCTCACCCAACGGCCTACCACAGACCAGCCTACGACACACAGTACCACTACAGCCGCGTATAACACGACTACAGCCgcccccaccaccacccacatCCCAGCAGTTCGTAGTGGGCCCCTGATCATCCCTTACCCCTCCAACGATCATGTGTTTATTGTCATGACTAGTGTGTTTGTGGTCATGGGATCTGTGGCCTTGCTCTTGGCTGGTGTCTGTTGGATCAGGTTGCAGAGAGGTGTGCGCCTGGCTCAGAAGGCAGACTACCCTGCTTATGGGGGTACGGGGCCCCATTCCTATGACAACAATGTGCCTGGGGATAAGAGGCTGGCTCAGAGTGCCCAGAtgtaccactaccaacaccagaAACAGCAGATGCTCTCCCTGCAGAAACAACGGGATGAGCCAAAGGTGCCTGACTCTGTGGCCACGTCAGATGAGGAGAATGAGGACGGGGATTTCACGGTGTACGAGTGTCCTGGATTGGCCCCAacaGGGGAAATGGAGGTGAAGAATCCTTTGTTTGATGATTCCACCCTTCAGCGGAGCCACAAGTAACCCTGACAACCCTGGACATTCTGATATGCACCTATAAAAGATGTCATCCTACATGTACAGGAAGATCAAATCACACTTAATTACTCGAACACCTACAAATAATCGGGTTTCTCTATACCTAGCCTGTCTCACATGATAACTCCTAACACGGTAGGGCGGCAGGTTTGTAAGGAGAGAAGGAATGAGCGGAGGTTGTGAGAAAGACGGACTtgaaaaggaggaggaagagaagcggtgGACTGTATGGACACTGTATCTGAATGGCAGATTGAAGTGGCATGCAGGTGAATCTCCTTTTGGATCGGACTGATATCTGGGACCTGTGACGTCTCTCGCACTTAGAAAACCTACACGACGTTGTACCTTTCCGTCTGGCCTAAAATATCCATTCCTTCGTATTTTGTTATGTTTATCTTATCTCTGGTGTAATTGATCCTGTAAAATTCTCTTTTTTTCTGTCAAACATGTGCACACATCAACCAACAAACTGACTAAGAGATTATGTGTATGATGATGGATAACATTCTCCAAGTACTGCTCTCCCCTTCAGTCCTTTGCGCTGTGTCACCCCTGTACAGAGGAACTTCTGGGTCGTGTTCACTAGAAATCAAACTTGATTTTGAAAAAAAATTGACAAATTGACAGAGGGACTATACCTGAACTTTTCCAACAAGAAATGCTGTTTTctttttccattgcaaaatgtaTCGCTACAGTGTGcgctaatgaatacaaccctgctTCATACGACAGATACCCACAGACCGGTTCAAGGAGAACAGAGAACTACAGTGGGAAAAGAAAGATGTGTTATGGGCCTATAGGTAGCTGTAGACTTGAAAACTGGTCTTAGAAATAATTATGGAACTGCAGACGTTAGTTCAAGCCTTTTGAAACGAAGAATGGTTTGGCATAGTACAATTATAAGGCTGTCAATGCTAATCATTGGCCAGACTAAATGGCTGCATTACAAAAGTCACCTCATTCCCTACATACACATATAAATAGGGAATAAAGTTCCATTAATTATGCATCTTAAATATCTGAAACTCATCATTGACTTTCTAATAATTtaactttaaaaaataaacaatttgtattttattttactgtTTCATGTACACATGCAGTGCATATGGTAAACCTGACCTGTTAAAGCTCTCTTATATAGCCATTATATTAATTATCATTATATATGGTCCCTCTATGCATGACTTGATGACACTGGGTTCTGCTGAAAAGGGATACAAGTCTATATGCATTTATGATTGTTATTCAAGTTTCCTGTGTAAACTTGCTTATGCTATCTAGATAACGTGAATGATTTCAAAGGAATTTGGAACCTCTTTTACAGAACTCTGAAACAGAGCAACCCCATCGTGTACACATATTTGTCCCCATGATTTGTGATGATGTTCATGTAAATAGCCACTGACGTGTACTGTACAGAGATGGCCAACTGTCACTAATGATGTATTTGTACACATTATTAGTCTATATTTCTGATTGCTGTGTCAAATGAACCACCGTTTGCTTTAGCCTAATGTGAGACCCAAATTGCACCCCAATCTTTTGTATCGTGCGTTTACTTTTTATGAAAGCCCGATAGGGCCTGGTCAAAAGGGTCGCactatagggaaaagggtgctcTTTGGAGCACACGAGTCTTTTCAGAAGTTGCCTATTGCCGTTGTCTCTCAGGAATGCTGATGTCATTAGCTCTTCTATGTACTTAACCATTTCTCTTACTCTCTGCCTCAACTCTCTCATACTGAATGAAAAGGTAGTCTGACACGTACTGTAACATGAATGATCTGTGGAtgtagttttattttatttgcccAGTTAGGCTTCAAGAACAATGTATGTGAGATAGAAAGAGGATTCTCTTAGAATGGACCCATCCGTTGATGTAGGCCTAGATGACTCGTGAAGTTGCTGAACATCAAACCTTGACTGTTTTACCACAtacctacaggtaactgccaaaataaagagaACCCCGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU577645 lncRNA downstream 108643 42142383 ~ 42143840 (-) True G508888
TU577663 lncRNA downstream 132092 42120186 ~ 42120391 (-) True G508902
TU577660 lncRNA downstream 136741 42115494 ~ 42115742 (-) True G508899
TU577638 lncRNA downstream 148969 42103030 ~ 42103514 (-) True G508884
TU577636 lncRNA downstream 150333 42101869 ~ 42102150 (-) True G508882
TU577814 lncRNA upstream 84324 42386073 ~ 42386706 (-) True G509045
TU577803 lncRNA upstream 97227 42398976 ~ 42402230 (-) True G509034
TU577804 lncRNA upstream 108578 42410327 ~ 42417077 (-) True LOC118964871
TU577827 lncRNA upstream 116076 42417825 ~ 42418041 (-) True G509058
TU577828 lncRNA upstream 116362 42418111 ~ 42418353 (-) True G509059
XM_036980140.1 mRNA downstream 11045 42146502 ~ 42241438 (-) False LOC110525987
XM_036980143.1 mRNA downstream 11045 42146502 ~ 42241438 (-) False LOC110525987
XM_036980141.1 mRNA downstream 11045 42146519 ~ 42241438 (-) False LOC110525987
XM_036980138.1 mRNA downstream 11045 42146659 ~ 42241438 (-) False LOC110525987
XM_036980139.1 mRNA downstream 11045 42146659 ~ 42241438 (-) False LOC110525987
XM_021606544.2 mRNA upstream 1172 42302921 ~ 42360392 (-) True LOC110525990
XR_005052110.1 mRNA upstream 103090 42404839 ~ 42413251 (-) False LOC118964871
XM_036981747.1 mRNA upstream 121662 42423411 ~ 42520495 (-) False LOC110525992
XM_021606552.2 mRNA upstream 238115 42539864 ~ 42549214 (-) True noxa1
XM_021606553.2 mRNA upstream 274780 42576529 ~ 42587286 (-) False LOC110525994
TU577652 other downstream 107598 42144097 ~ 42144885 (-) True G508891
TU577033 other downstream 431273 41820855 ~ 41821210 (-) True G508303
TU576563 other downstream 790561 41421024 ~ 41461922 (-) True G507906
TU576567 other downstream 813469 41434975 ~ 41439014 (-) True znf131
TU575676 other downstream 1710154 40540659 ~ 40542329 (-) True G507063
TU577801 other upstream 70692 42372441 ~ 42403220 (-) False G509034
TU578229 other upstream 341770 42643519 ~ 42645869 (-) True G509432
TU578716 other upstream 774943 43076692 ~ 43077157 (-) True G509902
TU578766 other upstream 820797 43122546 ~ 43123092 (-) True G509949
TU578769 other upstream 822832 43124581 ~ 43125387 (-) True G509952

Expression Profile