RNA id: XM_021606548.1


Basic Information

Item Value
RNA id XM_021606548.1
length 2082
RNA type mRNA
GC content 0.51
exon number 19
gene id stxbp1b
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42372531 ~ 42415108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTACAGTCCTACACAGTATTAGCGGTGGTTGGGTAGagtagagagggaaagaaagaaaagggGAGGCGGAGACACGGCCACGACAGAGACATCATCACCATGGCACCACTCGGACTTAAAGCCATTGTGGGAGAAAAGATTATGAATGATGTCATCAAGAAGGTGCACAAGAAGGGCGAATGGAAGGTTCTGGTAGTAGACAAGCTAAGCAtgaggatgatgtcatcctgcTGTAAGATGACAGATATCATGTCAGATGGCATCACCATTGTTGAAGACATTGGCAAGAAGCGAGAGCCTCTCCCCAGTATGGAGGCCATCTACCTAATAACTCCCAATGATGAGACTGTGGAGGCACTCATAGATGACTTCAGAGACCCGCGGTCGCCCAGATACAGAGGAGCTCACGTCTTCTTCACTGACACAATCCCAGATACATTGTTCAATCTGTTGACAAAATCCCGTGCTTCCAAAGCCATGAAGACCTTGACTGAGATCCACATCGCCTTTCTGCCCTATGAGTCACAGGTGTTTTCCCTGGACAAGACAGATGCCTTCCAGGACTTCTACAGCCCCTACAAGGCTGACATCAAGCACAACATGTTGGCGCGTTGTGCTGAGCAGATCGCCACTCTCTGCAACACCCTGAAGGAATACCCTGGCATCAGATACAGAGGGGAGTACAAAGACTGTGCCACTCTGGCTCAGCTCCTGCAGGACAAGCTAGACGGCTACAAGGCAGACGACCCCACCATGGGAGAGGGTCCGGACAAATCTCGCTCTCAACTCCTGATTCTGGACCGAGGCTTTGACCCAGTCTCTCCCATCCTCCATGAACTCACCCTCCAAGCCATGGGCTATGACCTGCTGGGCATCGAGAACGACGTCTACAAgtaTGACACCAGTGGGATGGGGGAGGTCAAGGAGAAGGCGGTGTTGCTGGATGAGGATGATGACCTGTGGATGAGTCTCAGACACAAGCATATTGCCGAAGTCACCACGGCTGTGACCCGCTCCCTCAAAGAATTCTCAGCCACCAAAAAGATGAACACAGGAGAGAAGACCACAATGAAAGACTTGTCTCAGATGCTGAAGAAGATGCCGCAGTATCAGAAAGAGCTAAGCAAGTACTCTACCCACCTCCACCTGGCTGAAGACTGTATGAACCGATATCAGGGCACGGTGGACAAGCTGTGTCGTGTTGAGCAGGATCTAGCGATGGGTACAGATGCAGAGGGGGAGAAGATCAAGGACCCCATGAGGGCCATCGTACCCGTCCTGCTGGATAAAGATGTCACTGTCTTCGACAAGATCCGCATAATCCTGCTGTACATCTTCATGAAGAACGGTGTTTCGGAGGAGAACCTCTGTAAGCTCCTCCAGCATGCCAACATCCCTCCTGAGGACAGTGACATCATCGCCAACATGGCCCATATGGGCATGCCCATCATCTTAGAGGGGAACCCGACCCGCAAAGTGAAAAAGACTGACCGGAAGGAGCGAGTGAGTGAGCAGACCTACCAGCTCTCCCGATGGACCCCTCTCATCAAGGACATCATGGAGGATGCCATTGAGGACAAACTGGATCCAAAGCAGTACCCCTACATCTCCCAACGCACTGCATCCACTCACAGCAGCGCTCCATCAAGTGCCCGGTACGGTAACTGGCATAAGAACAAGGGCCCCACAGAGATGAAGACAGGTCCCCgagtcatcatcttcatcatcggAGGCATGACCTTCAGCGAGATGCGCTGCGTCTACGAGGTCACACAAGCCAATGGAAAATGGGAAGCAATCATTGgaTCAACCAATATCTTCACCCCTACACGCCTTCTTCAAGCCCTCAAAGACATGGATAAGCAACAAGATGTTTGAGCTGAACAGCTCCCTGGCTGCAGTTGTCCCTCTCCTAACCTCCAAACTCTCCCAACTGGCATACATGAATAGTCAGGACCCAAGACATAACAAGCCCTTCTACTCTATACATAAGACTGAAGAAAACAAATGGCAGCATCTATTTCTAGCATATCCAAGTCATGTATTCAGATATCATGTTTCAATAGAATTACATAAGATCC

Function

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process

KEGG:

id description
K15292 STXBP1, MUNC18-1; syntaxin-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU577466 lncRNA upstream 338 42371964 ~ 42372193 (+) True G508717
TU577424 lncRNA upstream 40038 42319892 ~ 42332493 (+) True G508677
TU577294 lncRNA upstream 225287 42145407 ~ 42147244 (+) True G508558
TU577299 lncRNA upstream 227298 42144051 ~ 42145233 (+) True G508561
TU577300 lncRNA upstream 244934 42125122 ~ 42127597 (+) True G508562
TU577829 lncRNA downstream 3613 42418721 ~ 42418976 (+) True G509060
TU577830 lncRNA downstream 4484 42419592 ~ 42421183 (+) True G509061
TU577831 lncRNA downstream 6234 42421342 ~ 42422146 (+) True G509062
TU577833 lncRNA downstream 13197 42428305 ~ 42428596 (+) True G509064
TU577837 lncRNA downstream 17253 42432361 ~ 42432614 (+) True G509068
XM_021606542.2 mRNA upstream 123265 42244505 ~ 42249266 (+) True LOC110525988
XM_036980136.1 mRNA upstream 228923 42137053 ~ 42143608 (+) False paxx
XM_021606540.2 mRNA upstream 228923 42139067 ~ 42143608 (+) False paxx
XM_021606539.2 mRNA upstream 228923 42139068 ~ 42143608 (+) True paxx
XM_021606534.2 mRNA upstream 598576 41771717 ~ 41773955 (+) True htr1aa
XM_036980149.1 mRNA downstream 188200 42603308 ~ 42643804 (+) False camsap1b
XM_036980147.1 mRNA downstream 188201 42603309 ~ 42645904 (+) False camsap1b
XM_036980148.1 mRNA downstream 188201 42603309 ~ 42645904 (+) True camsap1b
XM_021606561.2 mRNA downstream 230926 42646034 ~ 42651728 (+) False LOC110525996
XR_005052112.1 mRNA downstream 364153 42779261 ~ 42780791 (+) True LOC118964872
TU577295 other upstream 240591 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 901123 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 1513009 40568726 ~ 40859522 (+) True fbxl17
TU574820 other upstream 1806102 40566067 ~ 40566429 (+) True G506285
TU574816 other upstream 1825018 40544863 ~ 40547513 (+) False G506281
TU577938 other downstream 151997 42567105 ~ 42569384 (+) False G509160
TU577937 other downstream 152140 42567248 ~ 42570169 (+) True G509160
TU579244 other downstream 1242360 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 2769331 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 2802619 45217727 ~ 45220782 (+) False LOC110526028

Expression Profile