RNA id: TU577804


Basic Information

Item Value
RNA id TU577804
length 490
lncRNA type read_through
GC content 0.48
exon number 4
gene id LOC118964871
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42404839 ~ 42417077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtCGTTGCCTGTCAGCACACATTTGTATAGCGTCACgtgtcgttttgttattttggttcgtttgttcagtgttcattcttataATAATAAAGaatgtgggttgtgttttggacGCAAGGCTCTCgaacggctctcgacctttgcctctcctgagtccgtacgggagttgagTTGAGACAAGACTGGGCAGGCTCTGGTTCCTCAGGGGCAGCGTTGGGGTCCAGGAAGTCCGGGTGCTGCAGCTCCTTTAGATAACATTATTCTAACATGACTGCGTTGCCATGAACTGTAAGTGGAGATGGAGTTGTCGCACTTGAACTGATGCAAAATGacagatgtttgtttctgtcggcgcgatgcgtgaagaaaccgggtggctgtaccgactctgataataTATCcggagtgagccatgtttccgtgaaacagagaatgttacaatctctgatgtctctctggaaggcaacccttgcttgaatttcgtctacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU577803 lncRNA downstream 8097 42398976 ~ 42402230 (-) True G509034
TU577814 lncRNA downstream 23621 42386073 ~ 42386706 (-) True G509045
TU577645 lncRNA downstream 266487 42142383 ~ 42143840 (-) True G508888
TU577663 lncRNA downstream 289936 42120186 ~ 42120391 (-) True G508902
TU577660 lncRNA downstream 294585 42115494 ~ 42115742 (-) True G508899
TU577827 lncRNA upstream 748 42417825 ~ 42418041 (-) True G509058
TU577828 lncRNA upstream 1034 42418111 ~ 42418353 (-) True G509059
TU578070 lncRNA upstream 2206 42419283 ~ 42420286 (-) True G509281
TU578071 lncRNA upstream 5913 42422990 ~ 42423760 (-) True LOC110525992
TU578072 lncRNA upstream 8465 42425542 ~ 42425753 (-) True G509283
XM_021606544.2 mRNA downstream 49935 42302921 ~ 42360392 (-) True LOC110525990
XM_021606543.2 mRNA downstream 108578 42252483 ~ 42301749 (-) True npdc1b
XM_036980138.1 mRNA downstream 168889 42146659 ~ 42241438 (-) False LOC110525987
XM_036981747.1 mRNA upstream 6334 42423411 ~ 42520495 (-) False LOC110525992
XM_021606552.2 mRNA upstream 122787 42539864 ~ 42549214 (-) True noxa1
XM_021606553.2 mRNA upstream 159452 42576529 ~ 42587286 (-) False LOC110525994
XM_021606554.2 mRNA upstream 159452 42576529 ~ 42587286 (-) False LOC110525994
XM_021606555.2 mRNA upstream 159888 42576965 ~ 42587286 (-) True LOC110525994
TU577801 other downstream 7107 42372441 ~ 42403220 (-) False G509034
TU577652 other downstream 265442 42144097 ~ 42144885 (-) True G508891
TU577033 other downstream 589117 41820855 ~ 41821210 (-) True G508303
TU576563 other downstream 948405 41421024 ~ 41461922 (-) True G507906
TU576567 other downstream 971313 41434975 ~ 41439014 (-) True znf131
TU578229 other upstream 226442 42643519 ~ 42645869 (-) True G509432
TU578716 other upstream 659615 43076692 ~ 43077157 (-) True G509902
TU578766 other upstream 705469 43122546 ~ 43123092 (-) True G509949
TU578769 other upstream 707504 43124581 ~ 43125387 (-) True G509952
TU579133 other upstream 1106637 43523714 ~ 43524108 (-) True G510310

Expression Profile