RNA id: XM_021606554.2


Basic Information

Item Value
RNA id XM_021606554.2
length 1645
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110525994
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42576529 ~ 42587286 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCCTTGGTTCAAAGGTTAATCATAACCAACACAATAGTATACTTGGCTAGCCGCTCGGCTCTTGGAGAAAGATAAACAACTCTTATTTGCGAAATTAACAGCACTCGACTGCTATAGCATTGAAGTCCGATCAAACTGTTTGAAAATCATAAGTGTAGGTGTTTGCACTATTGTCGCTGTTTTTCGAAggcgctagctaatgttagcaaacTAACGTAGCCATCACTGAACTGGCTCGCTAGCTATATAGTTACACACAAAACTACAGCTATGTTTGTGCAAGAAGAGAAGATATTCGCTGGAAAAATATTAAAAATCCACATTTGTACTATGGAGGGTACAGAGTGGTTGGAAGAAGTAACAGAGGATACCACTATTGAACAACTCAAAGAGAAGTGCTTGAAACatTATGTACATGGAAGCCTCGAAGACCCCAAAACAATCACACACCATAAACTTGTCCATGCTGCCACGGAGAGGATCCTCACAGAAACTAAAACGGTTGCAGATGAAAATCTAAAAGATAAAGATTTTCTTCTACTGATAAAGAAGAGACCACTGCCACCCCCTCCGAAAATAGCTGACATAACTGCAGAGGAAAAGAAGCAGGATAACAAGGCTCCAGATAAAGATGCCATCCTGAAGGCCACCGCCGGCCTGTCCACCCGTCACACAGACCGCACTGTCACCCAGCATAACATCAGAGATTTTCAGACGGAGCTCAGGAAAATCCTTGTCTCTCTCATTGAAGTGGCCCAGAAGCTTCTCGCCTTGAACCCCGATGCTGTGGAGCTCTTCAAAAAGGCCAATGCCATgctggatgaggaggaggaggaccgggTGGATGAGACGACCCTTCAGCAGCTGACTGAGATGGGTTTCCCTGAGAGCAGAGCCATCAAAGCTCTCAGGCTCAACCACATGTCAGTGACCCAGGCCATGGAGTGGCTGATTGAGCACGTAGACGACCCCACGGTGGACACAACCCTGCCCGGCCAGGGCACCCCAGGAGCAGTAGGAGCCACAGCACCACCCCTGATCCCCTCTATCTCTGCCTCATTTCCAAACCTCCTCCGCACCGTCTCCCAGACTAACACAGATTCCGCCGCCAGGCAGGACGAACTCACTGAGATCTTCAAGAGGATCCGAAGGAAAAGAGAGTTCAGGCCTGAGTCACGGGCTGTCATTGCGTTGATGGAGATGGGCTTTGATGAGAAGGAGGTGGTCGATGCCCTGAGAGTCAATAACAACCAACAGGATGCTGCTTGCGAGTGGCTGCTGGGGGACAGGAAGCCGTCTCCGGAGGACTTGGATAAAGGCATCGACATCAACAGTTCTCTGTTCCAGGCCATCCTGGAGAACCCTGTGGTCCAGCTGGGCCTCACCAATCCCAAAACACTGCTGGCGTTTGAGGACATGTTGGAGAACCCTCTGAACAGCACCCAATGGATGAATGACCCTGAGACTGGGCCTGTCATGCTGCAGATCTCCAGAATCTTCCAGACACTCAACCGCacgtagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578133 lncRNA downstream 1707 42573996 ~ 42574822 (-) True G509342
TU578130 lncRNA downstream 5080 42567232 ~ 42571449 (-) False G509341
TU578131 lncRNA downstream 6449 42567053 ~ 42570080 (-) False G509341
TU578132 lncRNA downstream 7109 42567232 ~ 42569420 (-) True G509341
TU578085 lncRNA downstream 129946 42446355 ~ 42446583 (-) True G509296
TU578279 lncRNA upstream 152704 42739990 ~ 42740374 (-) True G509480
TU578282 lncRNA upstream 158778 42746064 ~ 42746279 (-) True G509483
TU578286 lncRNA upstream 162236 42749522 ~ 42749918 (-) True G509487
TU578288 lncRNA upstream 165911 42753197 ~ 42753503 (-) True G509489
TU578295 lncRNA upstream 174680 42761966 ~ 42762227 (-) True G509496
XM_021606552.2 mRNA downstream 27315 42539864 ~ 42549214 (-) True noxa1
XM_036981747.1 mRNA downstream 56034 42423411 ~ 42520495 (-) False LOC110525992
XR_005052110.1 mRNA downstream 163278 42404839 ~ 42413251 (-) False LOC118964871
XM_021606544.2 mRNA downstream 216137 42302921 ~ 42360392 (-) True LOC110525990
XM_021606543.2 mRNA downstream 274780 42252483 ~ 42301749 (-) True npdc1b
XM_021606563.2 mRNA upstream 67698 42654984 ~ 42729593 (-) False LOC110525997
XM_021606567.2 mRNA upstream 67698 42654984 ~ 42729593 (-) False LOC110525997
XM_021606562.2 mRNA upstream 67698 42654984 ~ 42729594 (-) False LOC110525997
XM_021606568.2 mRNA upstream 67699 42654985 ~ 42729593 (-) True LOC110525997
XM_021606569.2 mRNA upstream 179253 42766539 ~ 42788488 (-) False LOC110525998
TU577801 other downstream 173309 42372441 ~ 42403220 (-) False G509034
TU577652 other downstream 431644 42144097 ~ 42144885 (-) True G508891
TU577033 other downstream 755319 41820855 ~ 41821210 (-) True G508303
TU576563 other downstream 1114607 41421024 ~ 41461922 (-) True G507906
TU578229 other upstream 56233 42643519 ~ 42645869 (-) True G509432
TU578716 other upstream 489406 43076692 ~ 43077157 (-) True G509902
TU578766 other upstream 535260 43122546 ~ 43123092 (-) True G509949
TU578769 other upstream 537295 43124581 ~ 43125387 (-) True G509952
TU579133 other upstream 936428 43523714 ~ 43524108 (-) True G510310

Expression Profile