RNA id: XM_036980147.1


Basic Information

Item Value
RNA id XM_036980147.1
length 7395
RNA type mRNA
GC content 0.52
exon number 19
gene id camsap1b
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42603308 ~ 42645904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTCTTTGTCACTGAATGAATGGTTACTTTGAATCCCGGTTGCGTGATAGTTTCAGCATCCACGCAGGCGTAGTGATTACTGGTTACCTAGCTATGTATGTATTGCTAACCGACTGACTATTAGATTGGTATGGGAAAGCGCAGACACGGAGGTACACAAGGTGCTTATTGCGAATAAGTCAAATTCTTCGGCCTAAAATGAGACATTAAATAGAAGGGATAAACGGTAAAACGCCGAATGATTAAATACTGTGTTCCGTAACCGCCATACATTTCTATCTGGCATTGGTAGTAAGTAAGCGCTCCTCGGGTTGCGGTGGCCGCAAATTTCTCAGGCCGCAAATTTGTTTTTTGTTGCTGGGGAGGAGACCGTTCGTTCACCTCGCTGCTGTTATGTGCTGCTTGGGCTTTGCTCGAGCAATTGCATAAAAACGTCCTTATGTTGAATCCATTATTCTGTCGGATCTAAAGGGTGGATTGAGGACACATCGCGGCTTTAAAGGATGGATGTGGAATTGTGTGCTGGCGGGCACAGCACCCGAAGAAAGATGGATTCAGCTGGCGAAGGGACAGTGGAGGTTGTACCTTTGGAATTGTACGACTCTGCCAGAGCAAAAATAGACGCCAACCTACGGTGGCTGTTCGCCAAAGCCTATGGCATTGACCACATCCCAGAGGACCTGCGGGACCCATTCTACACAGACCAGTATGAGCAAGAGCACATCAAGCCCCCCGTCCTCCACCTGCTGCTGTCCTGTGAGCTCTACTGCCGTGTGTGTGCCCTCATCCTAAAGACGGACCAGGCCGCCTCGCTGCAGTCACACCTGTCAGTTATCCAGGCCCTGAGCCGTAAAGGGATCTATGTCATGGAGAGTGATGACACGCCAGTCACAGAGGCCGACCTCGCCTGTGTGCCCATCAAAATGAGTGCCCACATGCCGATGGTTGATGCCCTGATGATGGCCTACACGGTGGAGATGATCAGCATAGAGAAGGTGGTGGCCTGCGTTAAACGCTTCTCCACCTTCAGCGCCTCCAAGGAGCTGCCCTTTGACCTGGAGGACGCCATGGTATTCTGGATCAACAAGGTGAACCTGAAGATGAGggagatcacagagagagagcttaAAGTCAAGCATCACCCGCTGGAGTCTCCCAATCACCAGAAGTCTCCCTCCAAATGGTATTGGAAACTAGTACCTGTACGGTACCGCAGGGAGCACACGTCAGGGCGCCAGTTGCCCTTCTTCCCCCTACTGGAGGACCTGATGAGGGATGTGTGTGATGGAGCCGCGCTCCTCACCGTGGTCCACTACTACTGCCCCAACCTCATGAAGCTTGACGATATATGCCTGAAGGAGGTGACCTCCATAGCTGACAGTCTGTATAACATCCAGCTGCTCAAGGAGTTTGCCAACGAGTATCTCAACAAGAGCTTTTACCTAACAATAGAAGATATGCTCTACTCTCCACTGGTGCTCAAGCACAATGTGATGGTGTTCATTGCGGAGTTCTTCTGGTGGTTTGAGACAGTCAAGCCAGAGTTTGTCCAACCCAGGACTGAGGAGTTCAAAGATGCCCGAGCCATGGCTCAGCCGAAGAGTGCCCGCCCCTCAGTGCCCATCTCCAACGCCACCAAGCGTAGCTTCCAGGTGACCCCTGGCATCACCgaggcctctctgtctgtctctgcccagAGCAGCCCTGATGTCTCCAACAGGTACTTCCTGCACCCTGCTGAAGACTCTGACCCTCTTACTAAAGGAGGTCCTGCTGCAGCCTTCAGCACCTCccacccactcctccctctgAGGCAGAGACAACAGAAGCAGCAACAGGGAGAGGATGGATCAGgaATTAGAAACCGCTCCAACTCCTTGGAGAACAGACAGCCACGAGGTTCAGTGCAGGCCTGGCCTGACAAGAGACAGAGGCCAATGTCAACGCTCAACCCGTACACGTTTGGTATCTCTGCCACTGACAGCGACGCTGATATAGCCTCTGGGGACAGTGTGAGTCTGGCCCGCTCCATCAGTAAAGACAGCCTGGCCTCTAACGTAGCCAACCTCACCCCCAAACACCAGGGTCTCACCCCCCAGGGCCACACCCTGATCGGACCCGCCCAGGTAGGCCGCGCCCCAGTCAGCCCTGCACCCCGCCGAGTCAACGGCCACGGCCTGCTGGGAAACgtcaacatggaggaggaggaggagcagcttGTGTCGGTGATGAGGACTGAAGCGTCAACAGCTCTCCCCAGTCAGGGCGAGGCGACGCAGCCAACTGCTGGGGCCAGGCCCAAGGATAGCTTTTACTTAGAACCACTGATGCCTGCTGTGTTGAAATCGGCAAAAGAGAAGTCTGTATGCCTgaataaggaggaggagagtggagaggtggGGCGATCGTGGGGAGCGGGGTCCATCCGGAGAGTAGAGGGGGTGCCTGGACTCGCGGCGTCGGCCAGGAGAAAAATCCCCACCAGCCTAAATCGGACCTCTACTCCCACTTCTAGTGGTGAGTTTGCCGTGTCTGCTGAAGCTTCATTGGCTGGGCCACCCCAGGGACAAGGAGCCTGTAAAATCCTGGTCACCAGTAGTGTGGACCCCTCCTCCAGAGAGCCACCTGGGGGCTTCTACCTCCACTCTGACAGTGACAACCAGAATCCTGGTCAGGACCTGGAGCCAGACCTGGACGAGGCTGATGAGGAGGACCTGGATGAAGCTCTCACCACCAAGGACCCAACCAGGCCTAGGAAGGCCTTCGATGAGGAGGAAGAGTCAGCCAAGCTGCAGGAGGACCTgaaggagaaagaggacaagGATAAAGgggatgatggtggtagtggacgCTCCAGCCCCTGTCTCAGCACCCACTCCCAGGCCAGCAGCCTGGCCAGCGGCAGCATACGCATGACCAGCTTCGCTGAACGCAAGGCCCAGCAGCGCTTTGGCAGCAACCATGACTTGCGACCCAGCGCATCCAGCTCCCAAAGGACCACCCCAGACGGCTCCGAGTGCAGCGGgcccctctctctgcccaccTCCTGGAGGCTGAAGAGGGACCAGAGCCCCTCCTCGCCCCAGGGGGGGCGGGGGGACGGTGGCACCAACTTGTTGGCTTCTGAGCTGGTCCAGCTTCACATGcagctggaggagaagaggaaggccatCGAGCACcagaagaagaagatggaggtaCTGTCAGCCAGACATAGACAGAAGCTGGGCAAGGCTGCCTTTCTGCACATCGTCAAGAAGGGCAAGAGCGACACCCTGCCCCACCCACTCAAACCAGACTACAACTCCAAAGAGGAACTCAACGGGGACAAAGGGAGGAGCTCGAAAGATGACTCGTGCCTGGATGCACTGAGAGGGGCCAAAGAGACAGAGTCTGCCACCTCGCCAGTCCCAGATGCCTTAGAGATGGTGGAAAGGAAGTGCAGCGGTAGCACCGGTCTGCTGCTGGACGAAGAACTGGACCTGAACGAATGTAACCGCTCCATTGAGATGCTGAATGATGCCATCGGCAGCATCCAGCAGCAGATGATGCAGCTGTCCCTCCAGCAGGACCTGCTGATGAAACAGAATGTACAGTCCCCTCCCGGCCTCCCTCCTCCCAACGACAAGACCAGCGGCTCTGAACCAAAAGCCCAATCTGCCGCCCACTTTGTGGAGATGGGCAGCGGCGCACCAACCACCGGTACCGCACCAACCAGGAAACCCCCCAAACTGACCTCGGCCAGAGGCCCAAGGTCGAAGCCGTCTGAGCTGAAGCTGGTCAAGGAGCACGGGAGGCAGGGCCTTACCTCCAGCAGGGCAATCACTCCCACCCACAGCCTGGAGACCCTACCCCACTTGAGGCAGTTCCCCGGGGGCAGGTCCCCCAGGGCAGACCCCCCTGACACCAGAACCCCCTCTGTTGGTGGAGAGACAATTGGTGTGCAGGACAAGCCTGGATGGAGCGCCACCTTTAGGCTCAACGATGAGGCTAACCTGCGCACAATGGCCCGTATCGACCCGGTAAATGTCACCCCAGAAGTGTCCTTTGAGTGCCTGTCCAGTACCTTGAGGGAGGGGGAGCTGAATTCCTCGGACAGTTCTGGGAAGGAGAACGTCCCCTTGGAGGAGGTGTCGTGGAGCAAAGCTCCCCTGATAGAGGTGGACCTGTCAGACCTGAAGGAcccagaggagatggagggagactgTGGTCAAAACAGCACCATGGATGGGGAAGACGGAGAACAGAAGTCTGGCCTGGGATTCTtcttcaagGATGAACAGAAGGCTGAGGATGAGCTGGCTAAGAAGAGGGCAGCGTTTCTCGTAAGGCAGCAGAAGAAGGCCGAGGATGCCCGGTTACGCAAACTACAGCTGGAGGCAGAGACTGAACAGAAGCGGGAAGAGTCCAGGCGGAAGGCGGAGGAGGACCggatgaggaaggaggaggagaaggcccGTAGGGAGCTGATCAAGGAGCAGTACCTGAGGAGGAAGCAGCAGGAGCTGATGGAGGAGCAGGGCCTTGGCAGCCCAGCCAAGCCCAAGACCCCCAAGACCAAGCCTAAGAAACCCAGTCACCAGACTCACAGACCCAAGTCTGCGTTCAGCAGAGAGGAGTCATCCAGCGACACCTTCTCTTCCAAGTGCTCTTCATCTACACCTGACAACCTGAGCAGTGCCCAGTCAGGCTCCAGTTTGTCCCTGGCCTCCGCAGCCACCACTGAGGCAGACAGCGTTAACTCTGGAGGAGCAGGATCCCAACGTGGTGAGTCTGAGTCTTTCCCAGGCCTGAGTCGAAACGCCAGTCGaaacactgagagagactgggacaACGGCTCCACTGCATCTTCAATCAACTCCATGGCAGAATACACTGGTCCCAAGCTGTTCAAGGAGCCCAGTTCCAAGTCCAATAAGCCCATCATCTTCAACGCTATCTCTCACTGCTGCCTGGCTGGCAAGGTCAATGAACCCCAGAAGAACACCCTCCTAGAGGAGCTGGAGAAGGTTGAGGCCCACCACCTGATGATCCTGTTCAGGGACGGGGGCTGCCAGTTCCGGGGAGTCTACTCCTTCTTCCCAGACACGGAGGAGATCCTCAAGCTGACTGGCACGGGCCCAAAGAGCATCAGCAAGAAGATGATTGACAAGCTCTACAAGTACAGCTCGGACCGCAAGCAGTTCACAGTCATCCCCGCCAAGACTGTGTCGGTCAGCATAGACGCCATCACCATCCACAACCACCTGTGGCAGGCCAAGAGAACCACTGTGCCAAAGAAGAGCGGGAAATAATCTGTGGAGGCCCTTGGAACTCTGGGGTTCCATTCCACTCCATGGTTGTCCTAGGTTCCATTCCACCCTGCTCTCCTGGATAAACTGCATTGATGTCCACTGCCAATAAACTCCCTCTATCAAGCTGAAGGAGAGGCCACATGTATGGGCAGACACGTGGCCCCTTCAGTTCACACTAATGTGGGGGCATGGATGGATGAATGCATCTGTGCTGGTGGCCTGCGAGTGGGATTGTCATCTGCATGAACCAATATGGAGGGTCCTCTTTGTCTGGATCTCAATGTATTCTGTTCAGGGTGTCCATTGATCAATTCATTCGGTTCATTTTTCTAAAGACTCTTAAGAGAAGCATGTGGCATTTTTTCATGTGGTGGGTTTCTTTTTACTTGAAGTATTTATTGGTTTGGCACTGAATGGTTGAGCTCAGCTGCAGTAGTCCATACAACACTACCCCCCCCATCGCTCTTATTGGACTGGTTATGACCCTACGAACACCCCTCTCGCTCTTGTTGGAAGGGGTGGGTTGTTCATAATCTCTCTACTGCAAAATCTGACCTGAAAGGACCTTATGTCCCTTCAGGACTTAAAAGGACCGTTCTGCTGCAAAAAAACAATCTGCAGTCGAACAAACTGGACCTTATCTACCAGACAAGCATCGCCAACCTTGCCTCTCCAGTTATCTTTCTGTCCAATGTGCTGCTTTGATCTCCTGTTTGTTACCTGGGCTCCTCCCAGACCATCTGCTGGCCTTCTTCATGCGTCATAGTGGTACTGTCAACTGTCTATTTATTCAAACTTCAACCGATTTTTAAATGGTTATCAGCCTGTTGTAGCACTGTCTATCTGGTGTGTAGGATTATGACGGTCGTTTTACTACTCGCCTTTTAACCCTCTAAAACGAGGGTGTGAAGACGATGAATAATAAATAGGCTTTGGTACTGTAGAAAAATGTCAAGAtgcttattttttgtttgtttttgtgttattTTGTTTTATATTGAGCAGTGTGGTTGGTTATACAGCAATTGAGCTTATGTTATGTGTGTTTCATCATCCATGAATCTGTCTGACATACGTCAGCTAGTTAGAGCTAGTCGTGTTTCTCTTCACTGGGCACTACTATGTCCTGTATAAAGGTGCACTCCACTCACGATCACGTTTCAAAGGCTTTTATCATgcaatgtacccccccccccccctcccttctatGCCACGAGTGATCGACTACCCACCAGGGGTGGGgtccattccatttcaattcagggaGTAAACTGTCATTTCAAGTCCATTGGAATTAAAATGTTGGCTTCGTTCCTAAATTaactgaattgaccccaaccctgctaccCGCCCagcttcctcccctccccttctgcaGCCCTTTCCCCAGAGAGCTGCATGCTCTTGTTCTGAAGAGTGCGTGCGTCCTGCTGGAACCGGTTTGAATGACATTATTTAATATATTCATAATGGGTTACTCTGTGGGACTGTGGTCTATTTTATTTACCTACCAACCAACATTAAAGAACATTCCTGAAAGGTGTCAACAAACACTGCCACCATTTTCCATTTTTCTCTGTCCAAGTGCTTATTATTAGATACCATATGTTGGCCTCAAGAACAACTATAAGTGTTGCACGTGCACTTTACTTACTGAGTACAAAAAGTGGAATTCGACTTTAAACGGACATTTGAAACGTATTGCAAACAAACAGAACAtggttaagtttttttttttaaacaactccTGTACACTCCCAACAGAGAAACACTACCCTTCCTGAACTAAAACAAAGCACTAAGATTTAACACTGAGCAGTCGATTTAAGAAGTCCTCGTTTCTTCACTACTACGGCTTGTCTCCAAAAATACGTAGAATACTTGATTATAATTTGCTGCATTTGGTTTATTTTTTTAATAGATCTTTTCAATGTTTGTGTTTTTTATGTTTACTAAAAGATTGTATAGGCATTGATGACCATTTGTTGTTACTGTATGCAATTTCCATGCCTGTTCATTTTACTATTTCTTTCAGATCATACCATCTATTTATTTTAAACGAACGCACTGAAACGGAATAAAAATTTCAAGttaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU577942 lncRNA upstream 14941 42578219 ~ 42588368 (+) True G509164
TU577941 lncRNA upstream 26411 42576553 ~ 42576898 (+) True G509163
TU577939 lncRNA upstream 29910 42570559 ~ 42573399 (+) True G509161
TU577924 lncRNA upstream 54083 42548231 ~ 42549226 (+) True G509148
TU577850 lncRNA upstream 157872 42445230 ~ 42445437 (+) True G509080
TU577966 lncRNA downstream 5727 42651631 ~ 42655499 (+) True LOC110525996
TU578041 lncRNA downstream 84016 42729920 ~ 42730149 (+) True G509252
TU578045 lncRNA downstream 88690 42734594 ~ 42734857 (+) True G509256
TU578049 lncRNA downstream 96110 42742014 ~ 42743213 (+) True G509260
TU578055 lncRNA downstream 104127 42750031 ~ 42750268 (+) True G509266
XM_021606545.1 mRNA upstream 188201 42372531 ~ 42415108 (+) False stxbp1b
XM_021606548.1 mRNA upstream 188201 42372531 ~ 42415108 (+) True stxbp1b
XM_021606542.2 mRNA upstream 354043 42244505 ~ 42249266 (+) True LOC110525988
XM_021606540.2 mRNA upstream 459701 42139067 ~ 42143608 (+) False paxx
XM_021606561.2 mRNA downstream 130 42646034 ~ 42651728 (+) False LOC110525996
XR_005052112.1 mRNA downstream 133357 42779261 ~ 42780791 (+) True LOC118964872
XM_021606571.2 mRNA downstream 164410 42810314 ~ 42825158 (+) True LOC110525999
XM_036981749.1 mRNA downstream 183907 42829811 ~ 42836106 (+) True LOC118965026
XM_021606572.2 mRNA downstream 207883 42853787 ~ 42992231 (+) False col27a1b
TU577937 other upstream 33140 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 33925 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 471369 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 1131901 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 1743787 40568726 ~ 40859522 (+) True fbxl17
TU579244 other downstream 1011564 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 2538535 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 2571823 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 2989685 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 3541096 46187000 ~ 46190292 (+) True LOC110526042

Expression Profile