RNA id: XM_021606561.2


Basic Information

Item Value
RNA id XM_021606561.2
length 3048
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC110525996
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42646034 ~ 42655499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTACAATACATATTTGCACATTTACATATATTTTTGCATGCCCTGTTTGCACTCCCACACCATTTACCTAGGGTTATTGATGGCATCTTTCACTTAAATTGAATATCAAGAACATCTAAAGTTTTTTTTTCCACCGGTGCTGAGCAAAAATGATTAATAAGTGAAGTTAAACCCAGATCACAAGTAACCTACAAGGGTGTTAGTGAGATGTGCTGCTATCCTCCAAGCCTCCCTGGTGTTAACTGTCTCCCACCACCCAACTGGAACAACGGTGCCCGGCATGCTTCGCTTGCAGCAGGACTCATAACCATGAAGCAAACCAGATGCCTGGCATTTGAGGCCACTTTGAATTCATCATGAACGTGTCTGCTGCTGGCCTTTCTGTGATGATGCTGTGTGGGGTTCTGGTCTCGGTGCGCGCCAACATTTGTGCTCAGGAGGTACAGATTTACATCTGTCAAGAGATCCCACAAAGTTACCCTGTTGGCCTGGCCTCTCTGGTGCTCTTTGTAAGTAATGTTGGAGCAATCAACCGTACTGTGTTCAGTAGTGACAACCTGGCCTCAGTCACCCGCCTCACCATTAACAACGCTGGTATCACCAACATTGCATCCAGAGCTCTCTGGTTCTTCCGTGACCTCAAAACCCTCAGCCTGGACCACAACAACATCTCTCAGCTCAACCCAGCCTGGTTCAGCCAACCAGCCATCCTCCAAAACCTCACCCTAATTCAGAACCATATTGAGGTTGTAGAGGACTCCATGcttagtgggttaactggtctaatTAGCCTAAACCTGACCAGGAATATGATCCAGAGCATTGCTCCTGGTAGTTTTAGCACCCAGTCCCATCTGGCCAGTTTGGACCTGTCTGGTAATAGGATCGTAACCATCAGTCCTGGTAGTTTCAGTGGACTCACTGGCCTAACTAGTCTCAACTTGGCCAGGAATATGATCAAGACCATCAGCCCTGGCTGTTTTAGCGCCCTGACCAGTCTGGCCTACTTGGATCTGTCAGGTAACAGGCTGACCAGGGTTAACCCCCAGGATCTGCTCCCATTCTCCCCCTCCACACAGATCAGGCTGGATGGCAACCCCTGGGACTGCTCCTGTGGAGTGGAGGACTTTGTCATCTTCCTCAGAGGTCTGCAGAATGCCTCTCtgctggagagggagatggaagtgACGTGTGTCAGCCCTTCAGCCCTGAGAGGCCAGCCTGTGTGGAACGTGTCCAAGTGTTTGATATCTAACCCACAGCCTCAGGAGGATACCCACATACAGCCCCCAGCCATGTCCATCACTGTCTCCACACTCATAGCAGTGATCGTGGTGCTGTGTATCCTGATCTGTGGGGTCTGTGCCCTGGCTGTAGTCTGGAGGAGGAAACGTGAGACCAAACAGGTGAAGCCCAGTCTGGAGACAAAACGGGAGGAGGAAGCCGCAGAGCAGCCAGACAGttccaccaccaccctccaccgACAGGTGGCTTCTTCAATGTCTGACTGGGATCCAGAGCTTGCTGCAAGGACTTACAGATCTGGAGTCAGAGCCAAGTCTGCTGATGCTGTCCTCTCCACGTCCCAGTtctgcagagcagagagagaagcacaCAGGGTGGTGGTGGAGACTGAGCGAGAACTATACAGGAcggaaagtgtgagagagagcccGTTAAAAGAGATGAAGAACTCCGAGGAAGAGAACAGCAAAGAGCCAGGAGATAATGAGTCCCAGGGGGTAGATAGAAACCTGACAGGAAAAGATGATATTAAGGGTGAAGTGAGTcaggaaaaggacagagatgagagagatgatgATGGAACTGTGAATCTGCAAGATGGCGGCCAAAACATAATATGTGTATCCCAGGATTCGGAGACCATACCGTACCTGACAATCGGTGCTGACCCGGCCGAACCAAACATTGAACGCCACAAAGGTCCAAGTCCACAGAAAGTCATGACAAGGATTTCCACTTGGCCCCCCACCTCAGCTCAGTGGCAGACCCACTTTGCCATACAGAGAGAGGGGCTCTGTGTCTTCCCTGAGAATGACCCTGGCCAAGAGGTCGAAGGTGAAACAGAGAACCAATCACCTGACCAAGAGTTCGAACAGATCCAGTCACCTGACCCCGGGGAAACCGAGAACCAATCACCTGACCTTGAGCAAGAGTTTAAAGATGACACAGATAATCGTTCAGCTGATGTTTCTGTCAGTGTTCTGGAGTCTTCACCCCCAGAAGGGGTGATGGGTGAGGTCAATGCTGAGGAGAACTGCAGCACGCCACCAGACTTAGAGACATCCTCTCCAGAGTATGATCCAGAACCTCTTATTGAGATAAGCGAGACCCTGTCAGGGAAGTGTCGACCAGGTCTGTCTAGTAATGTCCTGACCCAGACTGAGACCAATCCTGGTCAAGAAAATCCTGAAGAATTGGATAACAAACCCACACAAATTATAAACAGGGCTGTACAGAGTGAAGGCAAATCAAACAGAAAGGGGGTGCCAAAGAGAGCAGTCAGGAGCAGAGAGAGTAGTGGAGCTCCCCCTAGTGGTGTCTCCCCCAGTGACGACAACCTGCTACTGGATAATGAATACGCCTATATTGACTTGCTGCACGAGGTGGTTCAGAACCAGGGCCGATGgaccagagagaggtggaaacaGACTCACCTCAACAAAGCAGCAAGCAAGCACCAGGGACATTAAACTACAGACTGTGGCTTTTATGATCTGGTGTTGTCTTGTGTTTTTACTTGTCCTGTCTATTGGTGTATGTAATAGTCTGTAGTGTTTTGAAAAGTGCTATGcataataaaatgtattattaactGTGTTTTTCCCCTTTCCTGTGGTGACAAAGGGTGAGCAACCCCACCATTAGAAGTGTTTGAGTGATCATTTCTCTCTGTAATTAAACTACAGGAGTGTTTTTCCATTCCAATGTTTCTGGCTGCATGCAGCATTTATTGTTCATATTTTACATCACGGTAGAGAAGTACACATACTTCGGAATAAGAAAAAGTACAAAATGGGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU577942 lncRNA upstream 57666 42578219 ~ 42588368 (+) True G509164
TU577941 lncRNA upstream 69136 42576553 ~ 42576898 (+) True G509163
TU577939 lncRNA upstream 72635 42570559 ~ 42573399 (+) True G509161
TU577924 lncRNA upstream 96808 42548231 ~ 42549226 (+) True G509148
TU577850 lncRNA upstream 200597 42445230 ~ 42445437 (+) True G509080
TU578041 lncRNA downstream 78192 42729920 ~ 42730149 (+) True G509252
TU578045 lncRNA downstream 82866 42734594 ~ 42734857 (+) True G509256
TU578049 lncRNA downstream 90286 42742014 ~ 42743213 (+) True G509260
TU578055 lncRNA downstream 98303 42750031 ~ 42750268 (+) True G509266
TU578056 lncRNA downstream 99680 42751408 ~ 42751614 (+) True G509267
XM_036980147.1 mRNA upstream 130 42603309 ~ 42645904 (+) False camsap1b
XM_036980148.1 mRNA upstream 130 42603309 ~ 42645904 (+) True camsap1b
XM_036980149.1 mRNA upstream 2230 42603308 ~ 42643804 (+) False camsap1b
XM_021606545.1 mRNA upstream 230926 42372531 ~ 42415108 (+) False stxbp1b
XM_021606548.1 mRNA upstream 230926 42372531 ~ 42415108 (+) True stxbp1b
XR_005052112.1 mRNA downstream 127533 42779261 ~ 42780791 (+) True LOC118964872
XM_021606571.2 mRNA downstream 158586 42810314 ~ 42825158 (+) True LOC110525999
XM_036981749.1 mRNA downstream 178083 42829811 ~ 42836106 (+) True LOC118965026
XM_021606572.2 mRNA downstream 202059 42853787 ~ 42992231 (+) False col27a1b
XR_005052415.1 mRNA downstream 372135 43023863 ~ 43024698 (+) False LOC118965079
TU577937 other upstream 75865 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 76650 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 514094 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 1174626 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 1786512 40568726 ~ 40859522 (+) True fbxl17
TU579244 other downstream 1005740 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 2532711 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 2565999 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 2983861 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 3535272 46187000 ~ 46190292 (+) True LOC110526042

Expression Profile