RNA id: XM_021606568.2


Basic Information

Item Value
RNA id XM_021606568.2
length 4299
RNA type mRNA
GC content 0.54
exon number 31
gene id LOC110525997
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42654984 ~ 42729594 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACCTCACATCTGCAAAGGATGGAGTGCTGCTCAATAACAATAAGCTCCCAGCACTTTCTCACATGATTGCGTGATGCAGAAAGGAATGGAATGCAAGTCTACCTCGGTCTATATTGCGGCAGAAGTGCGTTCAGGATGCAGTTTTGAATTTCAGTCGCTCCATAGGCTGGTATTGACAGCAGAGGGGTAACATATTGGTCATTCTCGGCTGGGGGTAACTTGGGAGAGGGTGAACGATGGCAGGCGCTAAACTCACGCCATCTCCTTCGGAGATAGACCCAGACGTCAAGACCGAGGCGACGAAAACACCGGAGGAGCCGACTTGGGTCAACCCGTCGAAGCCGATACGAACGATGGGCTCTTTTGGGAGTGATGCTGGGCAAAGGTAtcaggaggagtacagtatggactctACCAACGCCCAGGTGCAGGTGGAGTTCTATGTGAATGAAAACACCTTCAAGGAGAGGCTCAAGCTGTTCTTCATCAAAAACCAAAGGTCAAGCCTGAGGATCCGTCTGTTTAACTTCTCCTTGAAGCTGTTGACGTGTGCCCTTTACGTCATCAGAGTGGCTCTGGACGACCCTGAACAGGTCACTGGAGTATGTGTCAACTGTCAGAATAGAACAAGCACAGCCACAGCAGAATCCACAGAAATCACAGAAATCAACTGggAGTTGATTTTCTGGGTGAACAGAAGGGTTCCTGTCTGGGCAATACAGGTGACCGTGGCCTTAATCAGTTTCCTGGAGGCGATGCTCCTCACGTATCTCAGCTACAAGGGGAACATCTGGGAGCAGATGTTCCAGATCTCCTTCATCCTGGAGATGATTAATACCGTGCCATTTATAATTACTATCTTCTGGCCTCCGTTGAGAAACATCTTCATCCCAGTGTTTCTCAACTGCTGGTTAGCCAAGTGTGCCCTGGAGAATATGATTAACGATCTCCATCGTGCCATCCAGAGGACCCACTCTGCCATGTTCAACCAGGTCCTCATACTTATCTGCACCCTTCTCTGTCTGGTCTTCACTGGggcATGTGGTATCCAGCATCTAGAGAGGGCCGGAAAGAACCTGACTCTGTTCAACTCTCTGTATTTCTGCATCGTCACCTTCTCTACGGTGGGCTATGGTGACGTCACACCTCATATCTGGCCTTCTCAGCTGCTGGTGGTCATTCTCATTTGTGTGGCCCTTGTGGTGCTCCCACTACAGtttgagGAGTTGGCCTATCTGTGGATGGAGCGTCAGAAGTCAGGAGGGAACTACAGCAGACACCGGGCCCAGACAGAGAAACATGCGGTCCTGTGCGTCAGCTCTCTGAAGATAGACTTGCTCATGGACTTCCTCAACGAGTTCTACGCTCATCCTAGATTACAGGACTACTATGTGGTGATCCTGTGTCCTACAGAGATGGACATCCAGGTGCGTCGTATCCTCCAGATCCCCCTGTGGTCCCAGAGGGTCATCTATCTCCAGGGCTCAGCACTCAAAGACACAGACCTCATGAGGGCCAAGATGGATGATGCAGAAGCCTGTTTTATCCTGAGCAGTAGGAACGAGGTGGACCGCACTGCTGCTGATCACCAGACCATACTGAGAGCCTGGGCTGTGAAGGACTTTGCCCCAAACTGCCCCCTGTACGTCCAGATCCTCAAACCAGAGAACAAATTCCATGTAAAGTTTGCTGATCATGTGGTCTGTGAGGAGGAATTCAAGTATGCCATGCTGGCTCTGAACTGTGTATGTCCAGCCACATCCACACTGGTCACACTCCTGGTGCACACCTCCAGAGGACAGGAGGGCCAGCTGTCGCCAGAGCAGTGGCAGAGGACGTATGGGCGTTGCTCTGGGAACGAGGTCTACCACATCCGCCTGTGCGACAGCAAGTTCTTCGGGGAGTACGACGGGAAGAGTTTCACCTACGCCTCCTTCCACGCACACAAAAAATATGGTGTGTGTCTGATCGGGGTGAAGAGGGAAGACAACAAGAGCATCCTGCTTAACCCAGGTCCTCGCCACATCATGTCCGCCCCAGACACCTGCTACTACATCAACATCACCAAGGAAGAGAACTCCTCGTTCATCTTCAAACAGGAGGAGAAAGACAAGAAGGGCCTGCCGGTGACCGGGCTGTATGACGCCCCCTCCAGGCTGCCTGTACACAGCATCATCGCCAGCATGGGGACGGTCGCCATGGACCTCCAGAACCCGGCGGACCCCCCAGAGGACTGCAGCAAACTGACCCTGCCTACAGAGAACGGGGCTGGGAGCAGACGGCCCAGCATTGCCCCCGTCCTGGAGATAGCTGACTCCTCCTCCATTTTGCCCTGCGACCTGCTCAGCGACCAATCAGAGGACGAGACCAACCACTCAGATGAGGAGGGCTCGTCGGTGTCAGACTTTGTGAAAGGATACCCTCCCAACTCCCCATACATTGGCAGCTCTCCAACCCTGTGCCATCTCCTACCTCAGAAAGCCTCATTCTGCTGCCTTCGGCTGGACAAGGGTTGCAGACACAACAGTTTTGAGGATGCCAAGGCCTATGGTTTTAAGAACAAGCTGATCATAGTATCCGCGGAGACGGCAGGGAACGGCCTTTATAACTTCATCGTCCCTCTACGTGCTTACTACCGCCCCAGAAAAGAGCTCAACCCTATTGTACTGCTACTAGACTACCCGCCTGACAACCACTTCCTAGAAGCCATCTGCTGTTTCCCAATGGTCTACTTCATGGGCGGAACCATAGATAACCTGGACAATCTGCTACAGTGTGGCATCATCTATGCTGATAACCTGGTGGTGGTGGACAAGGAGAGCACCATGAGTGCTGAGGAGGACTATATGGCAGATGCCAAGACTATCGTCAACGTACAGACCATGTTCAGGCTGTTCCCCAGTCTCAGTATCATCACCGAGCTGACCCACCCCTCCAACATGAGGTTTATGCAGTTCAGGGCTAAGGATTGCTACTCCCTGGCTCTCTCCAAGCTAGAGAAGATAGAGCGCGATAAGGGTTCCAACTTGGCCTTCATGTTCCGCCTGCCGTTCGCTGCAGGCAGAGTGTTCAGTATCAGTATGCTGGATACGCTGCTCTACCAGTCATTTGTAAAGGACTATATGATTCCCATAGCAAGACTTTTACTAGGCCTGGATACCACACCAGGATCTGGTTACCTATGTGCAaTGAAGGTGACAGAGGAGGACCTGTGGATCAGGACGTATGGCAGGTTATTCCAAAAACTGTGTTCTTCCAGTGCAGAGATTCCAATAGGCATCTACCGTACAGAGTCACACATGTTCTCCTCCTCAGAGTCTCAAGTATCCATCAACGTAGAGAACACTGGTGGTGACGACCAGAGAAGCAATCGTCGCGAGTCGTGGAAGGAGAAAACAGCTCAGCGGAACTCCACCACCAGCGACCAATCAGAACATCCGTTGCTGAGGAAGAAGAGCCTCCAGTGGGCGCGGCGTCTGAGCCGTAAGAACACCAAGCCCCCGAGTCGCACCGAGCGGATCTCCCAGCAGCGCCTCAACCTGTACCGGCGCTCCGAGAGACAGGAGCTGTCAGAGCTGGTCAAGAACCGCATGAAGCACCTAGGTTTGCCCACTGTCGGATACGAGGATGTTGCTAATCTTACTGCGAGTGATGTCATGAACCGAGTAAATCTAGGATATTTACAAGATGAGATGAACGACCACCAGAACAGTCTGTCCTACGTTCTCATCAACCCCCCTCCAGACACCATGCTGGAGCTCAATGACATTGTctACATCATCCGGTCCGACCCGCTGGCAGGGCCTGACGTGCCCGAGGATGCGGCTCAGGGGCAGAGCAGCGGCGGCGGCCAGACGAGGCAGGACTTTGGCACAGAGACCAGGGATGAGACCCACCTCTGAAATCCCCGCGCCTCACCACCCCCGGACCTCTTGCCCCCTTGTCTCACCACCCCCAAACCTCTCGCCCCCTTGTCTCACCACCCCCGGACCTCTTGCCCCCTTGTCTCACCACCCCCGGACCTCTTGCCCCCTTGTCTCACCACCCCCGGACCTTCCCCCCCTTGTCTCTCCACCCCCGGACCTCTTGCCCCCTTGTCTCACCACCCCCGGACCTTCCCCCCCTTGTCTCTCCACCCCCAGACCTCTTGCCCCCTTGTCTCCACCAACCCCGACCCTCTTGCCCCCTTGTCTCTCCATCCCCAAACCTCTCGCCCCCTTGTCTCTCCACCCCCGGACCTCTTGCCCCCTTGTCTCTCCACCCCCGGACCTCTTGCCCCCTTGTCTCACCACCCCCG

Function

GO: NA

KEGG:

id description
K04946 KCNT1, KNA1.1; potassium channel subfamily T member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578133 lncRNA downstream 80163 42573996 ~ 42574822 (-) True G509342
TU578130 lncRNA downstream 83536 42567232 ~ 42571449 (-) False G509341
TU578131 lncRNA downstream 84905 42567053 ~ 42570080 (-) False G509341
TU578132 lncRNA downstream 85565 42567232 ~ 42569420 (-) True G509341
TU578085 lncRNA downstream 208402 42446355 ~ 42446583 (-) True G509296
TU578279 lncRNA upstream 10397 42739990 ~ 42740374 (-) True G509480
TU578282 lncRNA upstream 16471 42746064 ~ 42746279 (-) True G509483
TU578286 lncRNA upstream 19929 42749522 ~ 42749918 (-) True G509487
TU578288 lncRNA upstream 23604 42753197 ~ 42753503 (-) True G509489
TU578295 lncRNA upstream 32373 42761966 ~ 42762227 (-) True G509496
XM_021606553.2 mRNA downstream 67699 42576529 ~ 42587286 (-) False LOC110525994
XM_021606554.2 mRNA downstream 67699 42576529 ~ 42587286 (-) False LOC110525994
XM_021606555.2 mRNA downstream 67699 42576965 ~ 42587286 (-) True LOC110525994
XM_021606552.2 mRNA downstream 105771 42539864 ~ 42549214 (-) True noxa1
XM_036981747.1 mRNA downstream 134490 42423411 ~ 42520495 (-) False LOC110525992
XM_021606569.2 mRNA upstream 36946 42766539 ~ 42788488 (-) False LOC110525998
XM_021606574.2 mRNA upstream 262456 42992049 ~ 42997858 (-) True zgc:101858
XM_021606575.2 mRNA upstream 275977 43005570 ~ 43018519 (-) False LOC110526002
XM_036980150.1 mRNA upstream 275977 43005570 ~ 43018519 (-) False LOC110526002
XM_036980152.1 mRNA upstream 275977 43005570 ~ 43018519 (-) False LOC110526002
TU578229 other downstream 9116 42643519 ~ 42645869 (-) True G509432
TU577801 other downstream 251765 42372441 ~ 42403220 (-) False G509034
TU577652 other downstream 510100 42144097 ~ 42144885 (-) True G508891
TU577033 other downstream 833775 41820855 ~ 41821210 (-) True G508303
TU576567 other downstream 1215971 41434975 ~ 41439014 (-) True znf131
TU578716 other upstream 347099 43076692 ~ 43077157 (-) True G509902
TU578766 other upstream 392953 43122546 ~ 43123092 (-) True G509949
TU578769 other upstream 394988 43124581 ~ 43125387 (-) True G509952
TU579133 other upstream 794121 43523714 ~ 43524108 (-) True G510310
TU579749 other upstream 1216745 43946338 ~ 43948389 (-) True prodhb

Expression Profile