RNA id: XM_036981749.1


Basic Information

Item Value
RNA id XM_036981749.1
length 2299
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC118965026
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42829811 ~ 42836106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTTCTCCCAGCCAAACCAGAAACCAAACCAAAGAAGGCTGTGAGGAGGAGAACTAGGAAGAACCTGAAGGACGGGAGCACTGGTAGCTGGTCTGCAGACACTGAAGATCCTGCTTGTACCAAAGTGAAGGAGAACGTGAAGGCAAGGAAGCCCAAAAGACGCAAGAGCCAATCCCATCAAACAAAAGACATCAAGGACACTGCcaatgagagagaggacagcaaggCTCCAGCCAATCACAGAGATGACAGCAAGGCCCTGGTTAATGAGAAAGAAGACGGCAAGGGGTCAGGGTTCACAGGTGAGTGCGAGGACCTATCCCTGTCTGGCCCAGAGAGCAGAACACACCAGAAAAAGACCAGACAAGTTAAGAAGACCccagagaaagacaaagacaaTGCCAAGACCCCACAAAAAGAGTCCAATAACAGAGTCAACATCCTTGCTGTACTGGAAAGGTGGCGTCTGGAGAAGAAGTTGTCATCTTGTCCCAACCCCTCGGGCTCAGATGTGGAGCTAAGTGAGGAGAGTGACAGTGCTCTGCACCCTGACAGGCAGCCAGGGGACCAGGACCGAGCTGTGCTCAACACGAGTCAAACACACATCTCAACGATAGAACAAGATCTACAGGCCCAGctGGATGTGATGATGCAGGTGTTGAACACGTCTGACGAGGTGGAGCAGCTGGTGCTGAGGAACACCGGCTTGACAGACGCACTCCTACTGAGCCTGGCCGCAGCCCTGAAGAGGAGCCCCTCGGAGGTCACATTCCTCAATCTCAACCTCAACCACATCGGACCCCAAGGGGCCCACATCCTCCTGGACCTACTGAGGGCCAAGCCCCAGGTCAAAGGACTGCTCTTGTTTGGAAACCAACTGGGAGACCCTGGAGTTCTGAAACTACTTAGTGGACTGGCTCAACTCCAGGAGATAACAACGAGACACCCAACATCACTACCATGGATTGAAGATCCCCAGGTCCAGGGCCAGAACCCGTTAACACACTCAGTTGTCCCCCTCCCTCCAACCACAAGGGGCACTCTCTACCCCttttcactgttggagctggacATAGGAGGAAACGGGCTGAGCAGCAATGGCCTGAGGATGTTGACATCCTACATGAGACTCCACTCAAGACTGCAGTACCTGGGGCTGGCCCGGACCACTGGTGTGGACCTAGAGGCATGGCGGGAGCTGTTTGACTCTCTGAAGGGAAATGTGACTCTCAGCCATATTATCCTGGATGAGAGTAACCTAGGAGACCAGGGAGCCAGGCTATTTTCTGACACGCTGAGAGCCAATCAGAGCCTGAGGCAGGTGGATCTGGACAGTAATGGGATTGGTGAGGTGGGAGGAAGTGAAATCATAGAGGCGCTGCTTTGTAGGACACAGTTTCCGCTGAGACACCTGAGTCTGGAGGGGAATGGTATCAGCACTGGACTAATGGGTAGAATTCAACAGGAAGTGAGATTTAACTGACagaaacatgttttaaaaaaaaaaaaattttataCATATTACAGAACTGGAATTTATCCAAAATGATGAACAAGGTAGGGCACAGCGCATAGCACAAAAGAGGAACAGTCAAAATAGATGTTGCGGAAAATACTAAATAATATGGATTTGTCTGACTATTTCTACACAAGATCAGCATCTAGCTACTGTACACGAGACTAGACTATTCCTCACTGTTAATAAATTACTTCTCACATCTATGTTGAATCATCTCAATTGGAGCTCAGTCAGTGTAAATTGCAGGTCAGTGGAATAAAACTGGAAAAACATTTGACTCTCTTTGCCAACTCACATGGAGGGCCTTTCCCTCTGCTACTGGTGGCCCTGATTTAAATATCTTTGTAGAGCTCACAGACATGGCCATCAGCTCAGCAGGTAGGAAGGAGTGCGCTGGGATTTAGCTAGGCTGCTCTGTGGTATGGATGAGACGTCAGAGAAAAGCCCTGTAAAGTAAGTCTTTCTTCCCAGAACCTGTGGTGAGGCCAGGCCAGGATGTTTACCTTGTGCTATTTTCTTCCCACCCTGATTTATTCACAAATGCTGCCCTCAGGACCACACTCCCCTCCTTGTTGACGCTTGTTATTCCCTAAAGTTTAGTATTCCCCTGGAAAATGTGGAGAAATATCCATATCTCGTAACCATGGTGATGCAAACATGAAGTGGCACAATTAAACAGTACTTCCTATTAGATACAGTAAAAATGTATTTCTACAGTAtctactgtattttttttaaaggcaggaATGAAGAAAATCGAATAAAAAAGAAATATATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578299 lncRNA upstream 63463 42766120 ~ 42766348 (+) True G509500
TU578061 lncRNA upstream 72840 42756766 ~ 42756971 (+) True G509272
TU578056 lncRNA upstream 78197 42751408 ~ 42751614 (+) True G509267
TU578055 lncRNA upstream 79543 42750031 ~ 42750268 (+) True G509266
TU578049 lncRNA upstream 86598 42742014 ~ 42743213 (+) True G509260
TU578501 lncRNA downstream 134450 42970556 ~ 42970917 (+) True G509697
TU578504 lncRNA downstream 137668 42973774 ~ 42974022 (+) True G509700
TU578430 lncRNA downstream 155189 42991295 ~ 42992257 (+) True col27a1b
TU578523 lncRNA downstream 165626 43001732 ~ 43002009 (+) True G509719
TU578535 lncRNA downstream 187674 43023780 ~ 43023984 (+) True LOC118965079
XM_021606571.2 mRNA upstream 4653 42810314 ~ 42825158 (+) True LOC110525999
XR_005052112.1 mRNA upstream 49020 42779261 ~ 42780791 (+) True LOC118964872
XM_021606561.2 mRNA upstream 178083 42646034 ~ 42651728 (+) False LOC110525996
XM_036980147.1 mRNA upstream 183907 42603309 ~ 42645904 (+) False camsap1b
XM_036980148.1 mRNA upstream 183907 42603309 ~ 42645904 (+) True camsap1b
XM_021606572.2 mRNA downstream 17681 42853787 ~ 42992231 (+) False col27a1b
XR_005052415.1 mRNA downstream 187757 43023863 ~ 43024698 (+) False LOC118965079
XM_036980158.1 mRNA downstream 1120071 43956177 ~ 43981885 (+) False LOC110526005
XM_036980159.1 mRNA downstream 1120071 43956177 ~ 43981885 (+) False LOC110526005
XM_036980160.1 mRNA downstream 1120071 43956177 ~ 43981885 (+) False LOC110526005
TU577937 other upstream 259642 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 260427 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 697871 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 1358403 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 1970289 40568726 ~ 40859522 (+) True fbxl17
TU579244 other downstream 821362 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 2348333 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 2381621 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 2799483 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 3350894 46187000 ~ 46190292 (+) True LOC110526042

Expression Profile