RNA id: TU578430


Basic Information

Item Value
RNA id TU578430
length 963
lncRNA type read_through
GC content 0.37
exon number 1
gene id col27a1b
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42853787 ~ 42992257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGTGCAATAGACATCTCGTTCTGCAACTTTTCAAAGCAATTCAGGTTTACAGTGATCTCAAAACATTGGATATAATAGTAATCATAACATTCAGGTGTAGGAATAGTTCCTATCAGACATCCACAGGTGTATGCTTTCCAGCCATCTTCTCCTGCCTAGTCTGCAGATGAGGTATGAATCTACTTGTGACTTGGTGCAGAAGAAATGCCCACCAGGCTATGAAAAACGATtgcgttcacacacacaaacattttggATGTGCGTTTCCCTAGTCAAGTGAATTGAAGCTTGTAAGAGAGAGTGGATCCAGAAGAGTGTCAGTCTGTCTACCTCCCATCTCTCATCTAGCTATGGTGCTTTCAACTGAGATGACACCTGATACCTTGTGCTAAAATAATTAACCGACTCCCGTGGTGGGTCATGTTTAATCTTGACAGAATATATCTACATGCCTTTTATACTTcaaaagggatttttttttatacattacaAATGCAagtaattttaaaaaatcaaacTCACTTTTCAAGCTAACATAACAGCATTTTTCCCCTGCATCATCATTGTATCCCCTTTGTCCGAGTCTGAAGCTATTATTGAAGATTTAGGTCTTGTTTTTATTACTTGTTGAATGTATATAATTATGCAAAGCTTTTTGTTGTATACAGTGGATCCCAACATGCTAATTTATGTTATTTAATGTCCATGGGTTTTGCGACTTTGTCATCTATTACACTTCCCATCATcagagctttttttttttttgcatacatTTGGGGCTTCGTGGATTTCGTGatcttttttcttcttcaaaaCTGTACTGTATTTGGACCGTTTAATGCTTTGACACTTACTGTTTTACCTTATTGTTGATCATGTTTGTGATAATCTACAGACCAACCAACCATAAACTCAGAATACCTCTCATCACACAACTCAGAGCCCTCCATTTGCATTtctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578504 lncRNA upstream 17273 42973774 ~ 42974022 (+) True G509700
TU578501 lncRNA upstream 20378 42970556 ~ 42970917 (+) True G509697
TU578299 lncRNA upstream 224947 42766120 ~ 42766348 (+) True G509500
TU578061 lncRNA upstream 234324 42756766 ~ 42756971 (+) True G509272
TU578056 lncRNA upstream 239681 42751408 ~ 42751614 (+) True G509267
TU578523 lncRNA downstream 9475 43001732 ~ 43002009 (+) True G509719
TU578535 lncRNA downstream 31523 43023780 ~ 43023984 (+) True LOC118965079
TU578538 lncRNA downstream 33910 43026167 ~ 43026443 (+) True G509734
TU578540 lncRNA downstream 36272 43028529 ~ 43028728 (+) True G509736
TU578545 lncRNA downstream 44780 43037037 ~ 43042996 (+) True G509740
XM_036981749.1 mRNA upstream 155189 42829811 ~ 42836106 (+) True LOC118965026
XM_021606571.2 mRNA upstream 166137 42810314 ~ 42825158 (+) True LOC110525999
XR_005052112.1 mRNA upstream 210504 42779261 ~ 42780791 (+) True LOC118964872
XM_021606561.2 mRNA upstream 339567 42646034 ~ 42651728 (+) False LOC110525996
XM_036980148.1 mRNA upstream 345391 42603309 ~ 42645904 (+) True camsap1b
XR_005052415.1 mRNA downstream 31606 43023863 ~ 43024698 (+) False LOC118965079
XM_036980158.1 mRNA downstream 963920 43956177 ~ 43981885 (+) False LOC110526005
XM_036980159.1 mRNA downstream 963920 43956177 ~ 43981885 (+) False LOC110526005
XM_036980160.1 mRNA downstream 963920 43956177 ~ 43981885 (+) False LOC110526005
XM_036980161.1 mRNA downstream 963920 43956177 ~ 43981885 (+) False LOC110526005
TU577937 other upstream 421126 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 421911 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 859355 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 1519887 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 2131773 40568726 ~ 40859522 (+) True fbxl17
TU579244 other downstream 665211 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 2192182 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 2225470 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 2643332 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 3194743 46187000 ~ 46190292 (+) True LOC110526042

Expression Profile