RNA id: XM_021606575.2


Basic Information

Item Value
RNA id XM_021606575.2
length 6112
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110526002
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43005570 ~ 43018519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGGTGTGACAAGCGACAAAAAAGCGTACTATTGCCACCTATTGGAAACTGGTACAGGCTGCAGTGCTCTGATAAAGACAACAGATGAACAGAAGACAAGCTAGACACACCAAAATGTATTTCTGCTAGCAACTAGCCTGTGGGTAACCAAACTGAATCAGCAAACCACCCATTCCTATGAAGATAAAAGAAACCTGGGCTCATGAGGATTGCTGGGCATACACCGAGTGGGATATCCACCAAGCACTGGAGTACAGATAACACTGCACTACCACCACTGTGGTAAACCATGATCCCCATCACTGAGCTGCGTTACTTTGTAGACTGTCAGCCTGCCTACCGTATCCTGAAGCCATGGTGGGACGTCTTCACCGACTACATCTCTATCGTCATGCTCATGATCGCCGTGTTCGGGGGCACGCTACAGGTCACTCAGGACAAGATGATCTGCCTGCCCTGCAAGTGGGTGGTCAACCAGACCTGCAGGAGGTATTTCAATGCCACCCTGTCGGCCCCGCTTATGTTGGAGCCCAAAGGAATCCAATACAACCTGGACCGCCACCAGTACAACTATGTAGACGCCGTCTGCTACGAGAACCGCCTGCACTGGTTCGCCAAGTACTTCCCCTACCTGGTGCTACTGCACACGCTTATCTTCCTGGCTTGCAGTAACTTCTGGTTCAAGTTCCCCCGGACTAGCTCCAAACTGGAGCACTTTGTGTCGATTCTCCTGAAGTGTTTTGACTCTCCCTGGACCACCAGGGCTCTGTCTGAGACGGTGGTGGAGGAGAGCGACCCCAAGCCGATGAAGATGAATGGCTCAATGGATAAGAAAGTGTCGTGTATCAGCGAGGATGTGGAGGCTAGCGTCCCCATGCTCCAAAGGACAAAGTCTCGCCTGGAGCAGGGTATTGTGGATCGCACAGAGACGGGCGTCCTGGATAAGAAAGAAGGTGAACAGGCAAAGGCCTTGTTCGAAAAAGTGAAGAAGTTCCGCATACACGTGGAAGAAGGAGACATTGTGTACAGGCTCTACATCCGACAGACTATTATCAAAGTCATTAAGTTTATTTTGATTATCTGCTATACAGGGTATTATGTGCACAATATTCAGTTCAGCGTGGACTGTAGTGTGGACCTAGAGGACCTCACGGGGTATAGAATGTATCGTTGTGCTCATCCTCTGGCCACGCTGTTTAAGATCCTAGCTTGTGTCTACATCAGCTTAGTGGGGGTTTATGGATTCATTTGCATGTATACCCTCTGTTGGATGCTGCGGCGCTCGCTGAAGAAATACTCCTTTGAGTCGATACGAGAGGAGAGCAGTTACAGCGACATACCGGACGTAAAGAACGACTTTGCTTTCATGCTGCACATGATCGACCAGTACGATCCGCTGTACTCCAAACGCTTTGCCGTCTTCCTGTCTGAAGTGAGCGAGAACAAGCTGCGGCAGCTCAACCTGAACAATGAGTGGACTCTGGACAAACTGAGGCAGAGGATCACCAAGAACTCCCAGGAGAAGCTAGAGCTGCACCTGTTCATGCTGAGCGGCATCCCAGACACCGTGTTTGATCTGATAGAGCTGGAGGTGCTGAAGCTGGAGCTCATCCCAGACATCACCATCCCTCCCATCATCGCCCAGCTGGTCAACCTGAAGGAGATGTGGCTATACCACACCCCTGCTAAGATTGAGGCTCCGGCCCTGGCCTTCCTCAGGGAGAACCTCAAGTCCCTCCACATCAAATTCACAGACATCAAGGAGATCCCTCTGTGGATCTATAGTTTGAAGAACTTGAGCGAGCTGCACTTGACGGGGAACCTGAGCGCAGAGAACAATCGATATATTGTTATTGATGGGCTACGGGAGCTGAAGAGGCTCAAGGTCCTCCGGCTAAAGAGCAACTTGACCAAGCTACCTCAGGTGGTGACGGATGTGGGGGTGCACCTCCAGAAGCTCTCAGTTAACAACGAGGGCACCAAGCTGATGGTTCTCAACAGCCTGAAGAAGATGGTGAACCTGACAGAACTGGAGCTGATACGTTGTGATCTGGAACGCATCCCACACTCCATCTTCAGCCTGCACAACCTGCAGGAGATTGACCTCAAGGACAACAATCTGAAGACTATCGAGGAGATCATCAGCTTCCAGCACCTGCACCGTCTGGTCTGCCTTAAACTCTGGTACAACCAGATTGCCTACATTCCCATCCAGATCGGCACCCTCAACAACATGGAGAGGCTCTATCTGAACAGGAATAAGATTGATAACATCCCCAGTCAGCTTTTCTATTGTCGTAAGCTACGCTTCCTGGACCTGAGCCATAACAACCTCACCTACATCCCAGCAGACGTGGGGTACCTGCAGAACCTCCAGTACCTGGCAGTCACAGCCAACAGAATCGAGACCCTGCCCAATGAGCTGTTCCAGTGTAAGAAGCTCCGTACTCTGAACCTGGGGAATAACTGCCTGACGTCTCTGCCATCACGCTTCGGGGAGCTGACGGGGCTGATCCAGCTGGAGCTGAGGGGGAACAGGCTGGAATGTCTGCCCGTAGAGCTGGGGGAGTGCAAGCAGCTGAAGAGGACGggcctggtggtggaggaggacctCTTCAACACCCTGCCCACCGAGGTGAAGGAGCAGCTGTGGAAGGTGGACAAGGAGACGGCCTGAACAGATGGGGGTTGGAGGTGGATGTTCACTCCGTTGAAACAGCCAGGGCCCCTGGAGGGCTGGGGAGGACTACACAGACCCAGACAGCACGCTAACCGAGCAGGACCTGCTCACTttgactgtactctactgcaggGCTGCTTTTCAAGGGAATCTATGCTAATGTCCCACCGCCATGCTACTTTTTTCCTGCAGTAACAGTTGTGAAATGCCGTTGTAAAAGGGACATTGGTAAGGAAAAGTGTTAAGTTTTACAAGATGTGTGTGGATTGAATGAGATCAGATGTGTTGCATATGAGATTGCAAAATGCAAATGCAATATTCCTGTACGAGAAAGGACTTAAATAATTAGCCAGCAGATGCATTTTCTGGTGGGCAGTGTTATTGTCATTCAGACAGGGTATATTATCCTGTCATATCGTATCGTAACCCATTTATATAACACAATGCAGTAGACTACCCTTGATCCAGATTCTCTAGGGTGCTACGGGATGTTTGGAGATGTACGGAACGGGGCTATGGAGAAAAATGGGGGAAGGCCTCAGGGCCATGCTTTTTATATTTCAGGTgtggggagggtttagtattatttattttttattgagtCCTGTAATTGATCAAATGATGTTTTCTCGGTTTTAGAATGAGTTGCTTACTATATAACGATGTGTGCCCGATGCTGCCCCAAAACCCTTATTCTCCTTTGGGCACCCAATTTCAAGTGACCTATAGTCTATTTGCTGTGATCCCAATCAAATGATCCATTGCTTATAGGCCTAGGCTATATGAAGTGCATGCTTGGAAAAGCACAAGGCAAAGTTATATTTGTAAGAAAATGAACTTCCTGAATGTTTTGCGCTGTTCTGATGGTGTAAATTTAAACTAGACTACACTGCAATGGATATTCCAGTCAAGAACCCTGCCCTGCTCTTGCTGACCAAAACCTGTTTGTGCTatctaaccaatggctgtgcaaTGTGGCAGTTCAGGAGGTGAGTCAGATATCTTCTGAAAATAATTTTTAATTCCGGCTAATTTGAGTAGGCCTAATTCATTTCAagtcttcattttaatttgactttactaacaagagggctttgtgttggagcctatttcttcctatttaagaaaaagaggtaggcctacctgtttgacagatgaAATCATAGGATGTTATAAATAGATTTTTCTCGGCCAGTTCCTCCATCAACCCTGCACTCTTTAAAAGCATCTGTCAGTGAAGTGCTTGGTGTGTTAAGTGAAAACCACGCCTCGAATTGAGCAGGTATGTGAGAGTATGCCATACCTTTTGTTAAAGAAAATGGCAAAAAGCATAGACCTACCCTTTTATTTTTAAGAAAATAAAACGGACCCTATTATATAACGCAATCTATAATGGTGCTTTAGTCCGTGATGCTTTATGCTAGAATCAAGCTGTAAAATACATGGGAAAGACGAGACTCCGATGCATATGGGGATGTATTTGGTTTGTCTCTATGACATTGAGTCTGAGCTACAACCTTCTATAGCTGACGAGACAAAAAAATgtactttgcttgggaagtaatctaatATGTGTGATTCTGTCGCTATCAATTGAGCTATTAATTTTCTGTAAAATGTTTAAACTCCAACAGCTTTTAGGGAGGTATGCAAGGTCAATGCATTCCTCTGACACAGCAAAACACATGAATAAGAGGAGCCTGCTTGTCATCAGAAACGTGGATTATAACACAGCTGCAATGAGCATTACTATGGATGAAGACAAGATTAACAAAATATGGTCTTTTTACAAAAGTACAACAAATGCATCATAGGAATGATAGCTGGCTATCGCTATGTAAACTTGGGATTGTATGTCAATCACTAACTGCTACAGTACTACCTTTGCTCCTTCTAGCCAAAGGTTAATACAGTATGATCCCCGAAAAAGGGATTCTTTTAAATAGGCAATACATGGACATTTTCACATGTCAGTTAATGGGAGGAGAGATGTGAATAAGAAGTCAAGAAGATTTAAAGGGATTTATTAAACATATATTGCACTAGATGGATGAAATCATCTCATCTACAGTAAGAGGATAGTCTTGTATTACACCGTCGGACAAATGCACAAAAAGCACAATGTGTAGGCTATTTATGTTATTGGAGGTTATGATGCAATGCAAATGTCCTCAGCAATGCTGGCGTAGACAATCAACTCTAATTTCATGGTGTATTTTCAGTGACATTATGCATGTTATAATGGAATTATGTACATATTAATGCTAGATTACATAGAAAGTGAGACAAGACTAACAGTAAAgaccagattaagcctagtctaGGACCAAAAAACATTCTCCGTCTCAATGGAAATTCTAATTTGAAAGAGTTTTTTTTTTCCATGACGAGGCTGAATCTGTCTAGGAAACCGACCCTAGATGAGTCCTGCCCATCATCAAGCGTGGGGTGTCTTGAAGAATATCAATATGAATATGAAGAATATCAATATGGAAACTGCATTTGGTGCGCGGGGTGTTTGTTGAAGTCTGTGAATCAATGTGTAATCCCAAGGAAAcccatttaaatatttttttatctacTCACTAGCCTAACTCACTAAATCAATCTTATTGAAGCCACTATTTTTAGGTAGGTTTATTGAGTGGTAAATGAAATGCAAGCAATACTTCATGATATTAATTTGAAGAACAGTCGCACTTAGACATTCCATTTTTCTTCAGTGTTGACAGCTATTAGTACAGTACACCAAAACCTCAGGAAATTGCCATTCAATTTTATCCTCCTTTTGTTGACATTTTTGTTTATTCCACTCAATATTTTGATGTTAATTTAACAGTTGTTATACCACACATTTTTATATTtctatactttttaaaatgttttctggTTTTTATTAGCATTTAATATAATATGAATTGCTGGTTCGAAATTGTCGAACTTTTAATAAAATAAATCTGAAATCATACATCACATGGGGCAATTCATTTCTATGTCTTCTGTTAGTTACATTCTGAAACACCGATTTAACAATGTTAAAGGTTTCTTTTGGTTCTCACTTGAATTAAGAGTATGGAAGGAAAGTATGTTTCATGTAGTTCTGTTTTTAATCTTATTTGTCATCCTTTCCAACATGTCATTTTGACACTATTGTTTTTAAATCTCATTACTTTGTTGACTGACAACCCCAGTTTAACTTTTCATTCAGACACAGTGACTAGCAGTCAGTAGTGTAGCAGCAGTatgacatttatttaaaaaagatAGTTCAGCACTTTTGGACAATAACTTTGCTATTTTGTTTAAATGACATGAATGTTGTGAACTGTGTCTAATCCTAATTATCCCCTTAAGCATGATCACCATTCCCCTCCTTTACTCTTTCATTCCTGTTATGaaattatagtataataaatgtAATTATGCACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578679 lncRNA downstream 2126 43003173 ~ 43003444 (-) True G509865
TU578678 lncRNA downstream 2526 43002601 ~ 43003044 (-) True G509864
TU578668 lncRNA downstream 16677 42988649 ~ 42988893 (-) True G509854
TU578367 lncRNA downstream 220605 42784729 ~ 42784965 (-) True G509564
TU578366 lncRNA downstream 221038 42784314 ~ 42784532 (-) True G509563
TU578689 lncRNA upstream 10255 43028774 ~ 43028985 (-) True G509875
TU578696 lncRNA upstream 21222 43039741 ~ 43044581 (-) True G509882
TU578713 lncRNA upstream 53732 43072251 ~ 43073742 (-) True G509899
TU578726 lncRNA upstream 67330 43085849 ~ 43086123 (-) True G509912
TU578733 lncRNA upstream 71671 43090190 ~ 43090403 (-) True G509919
XM_021606574.2 mRNA downstream 7712 42992049 ~ 42997858 (-) True zgc:101858
XM_021606569.2 mRNA downstream 217082 42766539 ~ 42788488 (-) False LOC110525998
XM_021606562.2 mRNA downstream 275976 42654984 ~ 42729594 (-) False LOC110525997
XM_021606563.2 mRNA downstream 275977 42654984 ~ 42729593 (-) False LOC110525997
XM_021606577.2 mRNA upstream 670785 43689304 ~ 43813410 (-) True LOC110526003
XM_021606578.2 mRNA upstream 922271 43940790 ~ 43955256 (-) False prodhb
XM_036980157.1 mRNA upstream 922271 43940790 ~ 43955257 (-) False prodhb
XM_036980163.1 mRNA upstream 1026527 44045046 ~ 44099131 (-) True LOC110526006
XM_021606584.2 mRNA upstream 1192331 44210850 ~ 44271697 (-) False nf2a
TU578229 other downstream 359701 42643519 ~ 42645869 (-) True G509432
TU577801 other downstream 602350 42372441 ~ 42403220 (-) False G509034
TU577652 other downstream 860685 42144097 ~ 42144885 (-) True G508891
TU577033 other downstream 1184360 41820855 ~ 41821210 (-) True G508303
TU576567 other downstream 1566556 41434975 ~ 41439014 (-) True znf131
TU578716 other upstream 58173 43076692 ~ 43077157 (-) True G509902
TU578766 other upstream 104027 43122546 ~ 43123092 (-) True G509949
TU578769 other upstream 106062 43124581 ~ 43125387 (-) True G509952
TU579133 other upstream 505195 43523714 ~ 43524108 (-) True G510310
TU579749 other upstream 927819 43946338 ~ 43948389 (-) True prodhb

Expression Profile