RNA id: XM_036980157.1


Basic Information

Item Value
RNA id XM_036980157.1
length 2152
RNA type mRNA
GC content 0.50
exon number 13
gene id prodhb
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43940790 ~ 43955257 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGCAGATACATGCGAAACTCATTTTAAACAGTCCACAATCGATGCTGCGCTCACCTGCTTAGTTAGTTCCGCTGAGACCAACGCAGCACCTCAAAACTCATGTCTTATGTCAAAACTGTACCAGCCCTTACTCGGGCAGGCGTGGATATAAACGTCAGAAGACTGAATACCCTTTCTAACCGAAGAGCACAGTCCACTGTCGCCTCAACTCAGGCAGACCAGGATGTCACCAACAGAGAGTCCTACTCTTCAAGGAAAAGCAGAAATGCTTCCTCCTCTCCAAAGATCTCTATTGACTTTGAGCTGACACAGGAAGCATACAAGAGTAAAGACAATTTAGAACTGCTCAGAAGTTTGGTGGTTTTCAAACTGTGCTCCTATGACCTTTTGGTTGATAAGAACAAGGAGCTGATGGATATCAGTAAGTTCGTACTGGGGAAGAAGGCATTTGAGCAGTTTATGAAGATGACATTCTATGGCCAGTTTGTGGCGGGAGAGGACCACAAGTCCATCAAGTCTCTGATTCAAAAGAACAGGGCCTTCGGAGTGGGCTCTGTCCTGGACTACAGTGTAGAGGAGGACCTCACACAAGAAGATGCAGTGACTAAAGAGATGGACTCATGTGTGTCTGCTACAGAGAAAGAAGGCATGAGCATGGACCACAGAGAAAAGCAGTATAAGGCTCACCAACAGTTTGGGGACCGTCGAGGGGGAGTGACCGGCGCCAGGACATACTTCTACTCTGATGAGGCCAAATGTGACCAACACATGGAGACCTTCCTAAAGTGTATCAAAGCATCTGGTGGGAGCTCAGTGGATGGCTTCTCTGCCATCAAGATGACTGCACTGGGACGACCTCAGTTCCTGCTCAAGTTCTCGGAGGTGCTGGTGAAATGGAAGCGTTTCTTCAGCTTCCTGGCGGCACAGCAGGGGAGAGATGGCATGGAGGCTCTGGAGCAGAGGCTAGAGCTGCAGCCACTACAGGAGTTTATGACCACGCTGGGGGCCACAGGTGACTTCCATGGCTGGTTCACTGGAGAGAAACAAGGATCAGGAACCATTGACAGGCTGGACTGGAACAGCCTGATCGACGACAGAATAAAGATATCAGATCTGCTGGTTGTCCCAAATTTAGAGACTGGTCAGCTGGAGCCCCTGCTCAATAAgttcacagaggaggaggagaaacagatgaAGAGGATGCTCCAGAGGCTGGACGTACTTGCCAATCATGCAGAGGAGCACAGTGTTCGTCTGATGGTGGATGCAGAGCAGACCTACTTCCAGCCCGCCATCAGCACACTGACTGTGGAGATGCAGAGGATCTACAATAGAGGGAAACCTGTCATCTTCAACACCTACCAGTGCTACCTCAAGGAGGCCTATGATATCGTGACCATGGATGTTGAGTTGTCTAGGCGTGAGGGATGGTTTTTTGGGGCCAAGCTGGTGCGTGGGGCTTATATGTACCAGGAGAGGAGCAGAGCGGAGGAGATCGGATACGAGGACCCCATCAACCCTGACTATGAGACCACTAACATGATGTACCACAAGATGAATGAGTTGGGCCTGACTCCCACGGAGAACAAGGTGTACTTTGGACAGCTGCTGGGCATGTGCGACCAAATCAGCTTCCCATTGggccagGCAGGTTTCCCGGTCTATAAATATGTTCCATACGGGCCGGTGAATGAGGTGATACCGTACTTATCCCGTCGTGCCCAGGAGAACAGGGGCTTCATGAAGGGTtcccagagggagagggagatgctgTGGAAGGAGCTAAAACGCAGGCTGGCCTCGGGACAAGTCTTCTACAGACCTCAGCCTGAACCGGGTCTATGaaatcacagctagctagctgtctgtctgtgctgtgtcatgacgttggcctctttgagTATATCaaccccatcccctctccctgccaccccccttgcctccttcaactaggctgctgtggtcagaggtcgtaaattcctgagaagacctcaTGGAGAGTAGTCTCTCATTATAGAGAGTAGTCTTTCAtggagacaaaggaaatccttcctcctcacagaacttgaggtacgaacaaatttcatgttctggagaaagtgtaaaagatcggtgaagaatccagctacgaactggtccgtttgtcacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU579145 lncRNA downstream 406601 43533913 ~ 43534189 (-) True G510322
TU579127 lncRNA downstream 421327 43519206 ~ 43519463 (-) True G510304
TU579042 lncRNA downstream 479867 43460694 ~ 43460923 (-) True G510221
TU579035 lncRNA downstream 483306 43457032 ~ 43457484 (-) True G510214
TU578983 lncRNA downstream 527817 43412758 ~ 43412973 (-) True G510162
TU579798 lncRNA upstream 43511 43998768 ~ 43999038 (-) True G510947
TU579802 lncRNA upstream 46636 44001893 ~ 44002194 (-) True G510951
TU580036 lncRNA upstream 226001 44181258 ~ 44181689 (-) True G511181
TU580045 lncRNA upstream 247879 44203136 ~ 44203395 (-) True G511189
TU580227 lncRNA upstream 326718 44281975 ~ 44282194 (-) True G511342
XM_021606577.2 mRNA downstream 127380 43689304 ~ 43813410 (-) True LOC110526003
XM_021606575.2 mRNA downstream 922271 43005570 ~ 43018519 (-) False LOC110526002
XM_036980163.1 mRNA upstream 89789 44045046 ~ 44099131 (-) True LOC110526006
XM_021606584.2 mRNA upstream 255593 44210850 ~ 44271697 (-) False nf2a
XM_021606583.2 mRNA upstream 255593 44210850 ~ 44272385 (-) False nf2a
XM_036980165.1 mRNA upstream 273328 44228585 ~ 44272386 (-) False nf2a
XM_021606588.2 mRNA upstream 354637 44309894 ~ 44336939 (-) False fbxw8
TU579133 other downstream 416682 43523714 ~ 43524108 (-) True G510310
TU578769 other downstream 815403 43124581 ~ 43125387 (-) True G509952
TU578766 other downstream 817698 43122546 ~ 43123092 (-) True G509949
TU578716 other downstream 863633 43076692 ~ 43077157 (-) True G509902
TU578229 other downstream 1294921 42643519 ~ 42645869 (-) True G509432
TU580173 other upstream 254081 44209338 ~ 44210665 (-) False nf2a
TU580171 other upstream 254208 44209465 ~ 44211823 (-) False nf2a
TU580172 other upstream 254208 44209465 ~ 44210665 (-) True nf2a
TU581656 other upstream 1319381 45274638 ~ 45276387 (-) True znrf3
TU583050 other upstream 2404631 46359888 ~ 46360886 (-) True apba1a

Expression Profile