RNA id: XM_036980158.1


Basic Information

Item Value
RNA id XM_036980158.1
length 6038
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110526005
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43937835 ~ 43981885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCTCACTTAACTCTGTGTAACTAACTAACTGCAGGCAAGGATAGAGTAACAAATCAGAAAGTGCCTGCCCCCCGCCACTCATGACAGCGCAATAGAAAGAGAAGACAATAACACGTTATTAATCTTTGATTTAAAAGCACAAAAAAAGGGAATCTTTGCCTCGACCAGTCGAAAGATTTAGTTTTTACCTATTCCATTGCACTGGGCATAAAACATAATATTTGTGGTCAAGTTATGGTTGGTGGCAATAAGCGGATGCTTTTATTGTCGGAGGAGGATGCCCGTTGGATTCCGCTACTTTCCTGATGCCTCTTTCCTTCTTCCTTATTCTTCTGAAAATGTATGGGATAATGAATGTTTTAATATTACAAATCAGCAATGAAGGAAAGTAATCGTTCGAGGAGATCGAATTGCGTGTTCAAGTTTGGGTTTTATAACTTCTTTGGAACTGTGCTCTGTGTGGTTTGGTGTCGCTACACATTCTTTCAACTCTTGGGTACGTCGATGGCGTAGATGGCGCAGTGGTAAGCCTTTTCTCCCCAACTGGAACCTGGATCATATCTCGAATACTTGGATAAAGCTTCTGAAGTTCCCACaataacaaaacattatttatttttttacctccgTGGATTATAAACGCAACCCTGGAGAGCAGAAGAATAGGGGCAATTGTCGTTTTCTGGAGAGGAGGAATGCGGAGAGAAAGAGGCATCTAGAAGGATGCTGTTTCTTGTAAAATGGAATTGAAGATCATTATTGAAGTTGTTGTGGTGGTTTGTTCATTTTTTTCTTTGAGTTTTAGCCAAGAACTCAATCCGAAAGGCAGAAATGTATGCAAATTACCAGGGTCACCAGGCTTTGTGTGCTGCAGCGGGTGGGGGCAGATAGGAGAGGAATGTTTGACACCTCTCTGTGAAGGCAACTTCACCTGTAAGGAAAATGAGGTATGCGTTAGGCCCAATGAATGCCGCTGTCGCCATGGATACTTCGGAGCCAGTTGTGATACAAAGTGCCCCACCCAGTTCTGGGGCCCAGACTGCAAGGGCAAGTGCCAATGCTTTCCCAACGGCCAGTGTGATGACGTGACGGGCAAGTGCACGTGCAACCCTAACCGCTGGGGGCCCAACTGCGAGAAGCCCTGCCTCTGCCAGAAGGGCAAGTGTGACCAGGACACAGGCACATGCACTTGCCAATATGGCTTCTGGGGCCCTCAGTGTGCAAACaactgctactgcagtctcaaCTCTGTGTGTGACCAGAACACAGGAAGGTGTAACTGTAGTCCAGGCTGGTCGGGGAGGAATTGTGCCATCCAGTGTAACTGTAATAACTCTCCATGCGAGCAGTTCACGGGTCGTTGCCAGTGCCGGGATAGACTGTGGGGCCCCCGATGCGAGAGGTATTGTCAGTGTATCCATGGGAAGTGCAACCAGGCGGATGGCTCATGTACCTGCACACCGGGGTACCGGGGGAAGTTCTGCAGGGAACCGTGTCCCGCAGGGTTCTACGGACAGAACTGCAGGAATAGGTGTGGCCACTGTAAAGGCCAGCAGCCCTGTAAGATAACAGAGGGGAGGTGTGTGACCTGTGAGAGGGGCTGGAACGGGACCAAGTGTGATCAGATGTGCCTGCCAGGCTTCTTCGGAGAGAACTGCCTGGATGTGTGTCCCCCGTGTAAAGATGGCCACTTCTGCAACCGCATCGACGGAAAGTGCTCCCACTGCAACCCCGGCTGGATCGGGGACAGGTGTGAGGTGCGCTGTCCCAACGGGACTTATGGGGATAACTGTGAGAATGACTGCAGCCACTGTTTTAACGGCGTTTGTCACATTGCTACCGGAGAGTGCCTGTGTGAGCCGGGATTTTACGGGACCTACTGCAATATGACGTGTCAGATGGGTCAGTATGGAGTGAACTGTGCCCAGACCTGCTCCTGTCACGACAAGAACTGCAACCCAATGTCTGGGGCCTGCAACCTACAGCCCAACCAGCGGATGGGAGTGATCGCGGCAGGAACCCTGGTCTCTTTTCTGCTCATTGTCCTCCTCTCGCTGctttgctgctgctgcctctgccgAAATAAAGATGACCACAAtcCTGACCAAGACAACTCTACCAACAGCAAAAAAGCCAAGCGGATCCTGTGTGGAAGATTCAGCCGAATCAGCACCAAACTCCCCCAGATCCCACTGAGACGACAGAAGCTGCCCAAAGTAGTCGtAGCCCACCACGACCCGGAAAACACATTCAACTGCAGCTTCATCGAGCCCCCTTCTGTAGTTGAGCAGCCCTGCCCTTCCTCCTGGTCCTCCCAGGAGTCCTTCGATTCCTTCGACGAGGAACCCAGCGATGATGGCCCCGTATACTGTGTACCCCATGAAGAGTCACTGAATGAGAGTAAGGAGAAGCCAGCAGCTGAGAAGCCATCCGCAGCAGCTGTGCCCAGTGAGGACGATGCAGGGGAGTACACCTCTCTGAAAGACACCAGCGctaccagcaccaccaccaaCAAGCCTCAGGCTGGGGACGGGAGCGAAGCAACCCTGCTCAAGTCCTCTGACAGCGAGGGCTCCACCAGTGGCTCTGAGTCGGCCATTGGGGCCCTCTATGCTCGCATTGCACACCTCTCCAAGAACTCCAAGGACGAAGAGGATGGGGGTGGCAGCACAGTTACAATAGAGGTCAAAGGTAATGGCAAGCCACCGTCCCCGGGATGGAAGACCACCACCAAACCACGCCCGCCAGACCCTTCCACCAAACCGAAGGTGTCATGGATCCATGGGAACACCGGGAGTACCACACCCCCCCAGGTGGAGCAGCTGAACCAGGGGGGTAAGGGGCTGACAGTGCCCAAGGAGAGGACGACCAGGAGCTCCAGCGACAGCTCAGCCAAGAGCGAAGAGAGGCAGAGGCTGAAGGAGACGTCCAAGGAGAAgaggaacaaggaggggaaggggACGGAGGTCAATGGTTCCCCCAGCAAACACAAGGCCCAACGGCTGGGAAGGTCCAGGGAGGATATTAACCACATGGAGCACATAAATGGAGTGGTGCAGAACGCTCTCAAGAAGATCGGTAACTTCCACAACTCCAACTCTGACAAGAAGGCGGCCGAGAAGGCAGCCGCTGTGGAGAACCCCAAGGAGCCGCCCAAGAGCCCCAAAGTGATCCACCCACACATGAACTCCGAGGCCGCCACACTCCTGGCGGCCCAGCTCAAGGAGAAGACGCAGAGCATCAACCGGAATGAGGGCACCGGCCTGGTAAAGACCAACGGCCTGCCCACCCCAGCCTTCCGGGACCGAGGAGACCGGGAGAAGCCCACTCCTCCGCAGAAGGCCAAGCGGACCACTCCGGCCACCCCAGGCCATCAGAGCTCCAACAAGCCTCTGCtgcccaccaccaccagcctccaGAAGATGGTGGGTGTGGGGGTCCCCACAAGGGACCCAGCCACCCCCGAGGTCGACCCCAAGAGCCCGGAGAAGCAGGACTTGAACGGCTCCAGGGTGGGAGAGGGTGTTGGTGGAGCAGTGAACGTCACGCCAAAGAAGACACCCATCAAAAAGCCTCCCAGAAAGAGAGGCAAGGAAGGGACATTGGATACTGCTCTGGAAACTAAGACACCAACAAAGACAGCAATTATGCCACCGCAGATAATCAAATAGACAATTTTTTACTCCGACCTATTGACCAGGGTTTTTTATTGTTACTCACACACATGACAATGGGGAATTAATTACTTTTCTTCCAAAGGAGACATGCAAAAGGACTTGGTGGTTTTTCATCAAAGGAatttattatgtgtgtgtgtgtgtgttgtgtgtccggGACCAGTGGAAAGTAAATAGAACTTTGTTTAAATTGTGGTCCTTCTCATTGGTGTGGGAGTGTGTTTGTATTATATTGAACTCATATACCTGCAATGTATCAGTTTTACACTTCAAAGTCGGACATAACTGTGGCAGTGGAAGAGTTCTGACAGCGGCAAACAATCATCTTCTATTTTCTTCCATCTCTACTATATCCCTCCAATGCCCACCACTATATTTATATAGGAATTTCCGACAATAATTgtaatttaaaatgttttttctcAACATTGTATGTGatacaacaatagaaatgtaatcTATGCAAAGAGAGGTCTCAAGTTGAAACAAGGTACTGAGAATACAAATACAGTATTTGTCTGTTTGATTTAAATTAGCCAGTTTCAATAAGGAACACTCCATAAAGGAGATTGTTGAgttatttgtatatttttttgttgctatGTTGTCCACAATCTAATGTTTTAGCTGAAGTACAGTACATTTGTTCCACAATTTTGTCAGTCACAGTTTATTGACAATGAAATGAGTAATCAATGCAAACTTTTAAGGAAGCACTTGTTGTCATTCCCCTCCTAACAGAGCAATAGCCCTGTATTCTGAAGGCACGCACTATATTACCTGGATATGCTGTAAAAGCACCTAAAAAAAGCTAAGAGGCTGTTATGTTCTTTCGTCAAGCCTATTGAACAGCTAGTGTAAATGTCTTAGTCTTAGATTCTTTCCCACTCAATCGTTTTCAGCTTGATTCTTACGCACTAATAAATGTGGGTAGGCAATGTTCCTTAAACCAAATGCTTCTGTGCATTGTTTCTGCAGCCATTGTTTTCTAAGAAGCACACAGAGACAGGTGTATTGCCACTAGGTCTTTGGCCACTAGAAACAGTCTGTGAGAGGCCTTGGCTTATCTGGTATTTCACATCATAATGTTGTTTATAAAGGTTGAAGTCATGTTTGAATTCCAGATTAAATATTATACTTACATTTTGATACTTCAATCATTCTTTAACAGTATATTAATCATCCACCTACCTGACAGACAATCTAGTCATGTTACATTAGAAGGTTGCCTTTTCCTTAACTTGAATTCCAGTGTGGCTAAGTAGCTGAATAATGCTAGCTATTTAAAGCTAATTGGTTAAAGAGGCCTCAAGGGTAACACTTACCCCGAAAGGGATGTATTGTTCAATCAACATTTCATACTGCATTAAGTTTGACTGGTTTTATACATATGAGGATTACTACATTACAAGAGGAGGCTCGTAGAAAAGAGTATGGAATTTAAATACAACACTTAAGCAAAAAACTATTAACCAATCTGCATAATATAAAGTAGTACAAAAGTGGCAGTGGTGTTCAGACCGTGGATTCAGACTTACTGTACATTCCACAGTTTTCAGAGCTATTTGATGGATTTTTTGGTGCCTTTGatgttttaattttattttttttgttatggTACAGCCAGCCTATTCTTTGCCAGTGTTCTTTTTCGACACGTGAAGGTGTTTTTGTATCAGTATAATTGTATATGTTTGTAAGCTGCGCTTATATGAATTATTTTGCTActtatttttgtgtgtgtcaaTGAACTGGCTTTCATGTTACATTTGATTGTTTTGTGTCAGGCTCTCTGCAGCCACAGTATGAGTATGTACTTTGTAAAGTTGCCCTTGGCTTGTCATTTCCCTTTTtcctgttgatgttgttgtttgtttaacacttaacTGCATGAAGCAGAGTGAAACTTATCTGGCATTAATAGCTACACAGGAATCTATAGCCTAACTCTCTTTTTCTTATCGACTTTCCCAATTGCTATCATTTTGTCCGTAGGAAATATACAATATCAAAACTTCAAAGGATTATACAGGATGTGCATTATTGTGTTACCACTGTTATTAAGTACGTGTAACTAAAACCATATGAGTTGTGTGATTATAAAGTGCCAATTTAAGCAAGCAGAAAACACATCTTTTTATATCTGACTGACTGGCCTCTGCCTGCTTTCACAGGCTACAGTACATATTTTTAAGCAGGGCCTCATAACGCTGCAGAAACATTATCAGTGATATGGTATATTTGTAACTCATcattctgttttgtttgtttgtctgatctgattttcagttttttattgtcgttgaattttttttattttttttatttacttctTTGAAATAAAAGCGATACATGTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU579147 lncRNA upstream 421026 43534841 ~ 43535151 (+) True G510324
TU579134 lncRNA upstream 431328 43524623 ~ 43524849 (+) True G510311
TU579131 lncRNA upstream 434054 43521648 ~ 43522123 (+) True G510308
TU579089 lncRNA upstream 463825 43492149 ~ 43492352 (+) True G510268
TU578973 lncRNA upstream 549381 43406446 ~ 43406796 (+) True G510152
TU579782 lncRNA downstream 8067 43989952 ~ 43990487 (+) True G510932
TU579788 lncRNA downstream 11126 43993011 ~ 43995124 (+) True LOC118964874
TU579797 lncRNA downstream 16898 43998783 ~ 43998991 (+) True G510946
TU579801 lncRNA downstream 20008 44001893 ~ 44002194 (+) True G510950
TU579837 lncRNA downstream 47805 44029690 ~ 44029918 (+) True G510986
XR_005052415.1 mRNA upstream 931479 43023863 ~ 43024698 (+) False LOC118965079
XM_021606572.2 mRNA upstream 963946 42853787 ~ 42992231 (+) False col27a1b
XM_036981749.1 mRNA upstream 1120071 42829811 ~ 42836106 (+) True LOC118965026
XM_021606571.2 mRNA upstream 1131019 42810314 ~ 42825158 (+) True LOC110525999
XR_005052112.1 mRNA upstream 1175386 42779261 ~ 42780791 (+) True LOC118964872
XR_005052113.1 mRNA downstream 10948 43992833 ~ 43995155 (+) False LOC118964874
XR_002473856.2 mRNA downstream 277211 44259096 ~ 44260124 (+) True LOC110526008
XM_021606586.2 mRNA downstream 302967 44284852 ~ 44295238 (+) False LOC110526009
XM_036980166.1 mRNA downstream 302967 44284852 ~ 44295238 (+) True LOC110526009
XM_021606590.2 mRNA downstream 313729 44295614 ~ 44309360 (+) True LOC110526012
TU579244 other upstream 297684 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 1386008 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 1386793 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 1824237 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 2484769 41469551 ~ 41471408 (+) True G507768
TU581131 other downstream 1202554 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 1235842 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 1653704 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 2205115 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 2378071 46359956 ~ 46360585 (+) True G513501

Expression Profile