RNA id: XR_005052113.1


Basic Information

Item Value
RNA id XR_005052113.1
length 1365
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC118964874
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43992833 ~ 43995155 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGACCATTTCCCATAATGTCTGTCATTGAGAATAAACCAAAAGAAAACCCAAACTAAAAAGATGACTCATTTTCCTAATGGACCCTCTTCCCCCCTTGGCCCTGCCACCTGGTTCAGTCCAACCTGAGCACATGTGTCCATGGTCACCCGAAAGGTAGTTTACTGTGTCAGTTGTTGAATAACTCCATTGAAGACTCAAGAAGCAAGGTTTAGGCTCAAACATGTGGGCCGTTTTGTTGCTCATGCTGACCTTTTCTGCTCCAAGAAGGACGGCAGAAGAAAATGTCACAGATTTAGCCGTTGAAGAGAGACTTGTAATAGCCAAGGGCATACTTAAGTGTGGTTGGATGAGCCATCAAGAAGATGCCTGAGCTCTATATGTTTCTCATGGAGCGATGGGCATTGTAGTATCCTTCTATTGGTTTCTGTGTAGATCTTCAATAGATTTATGAGGCTAGATTATAATTGTATTATGGTTGCTATGTCACTTTCTAATGATATCTTAGGAGATCGCATTGCCTCATATGGTTACATCGTACCTCATGTAATTTTTTTCAAAACTTGACCCACCCAAAGCCTTTTGTAGTTTCTCATGACCTTCCAGATAAACAAGAAAATGTGTGTTAGCAACAACCCAGTTTTATGTGGGTCCAACTACATTCAAATCCATCATGTGTTGTATGTTCAATTATGTTTGATCTCACTTCAAGTAGATTGTTCTTGAATTTGTTGGTGTTCCCGTATCCTACAGGCAGAGAGTGAACCTAGTCCTGGACAATAACAAAAAATCATGCTTAATGGAGAATCTTCActgaaatagatttttttttgtccagGACTAGGAATAATCTGGGCTCAGGAAACCAGCCCTACATATGTTCCTTGAGCCTCCTTTCAGTTGAAGTCACAATCTGGAATATGATACAGGGGAGGAGAAGAATCCATTTCTGATCTTCTACAATGATAAGGATGAGGTTGTTCAGATTGTCCCTGTAAAGTACATGAAGGTGGATGAGATCAGCAGTCTGCTGGTGTTGCTGGGTTTCTACAATAGATctcagaagagagaggaggtacTGGAGCAGTTTCAGTACTTTCCCCTGCGTGCCCCCAGAGATGAGCTGTAAGCACAGGGACATCTTGTGGCCATACTCTGTCGTTGCACCCTGTCACACATGACGAGTGAGGCCCCAAGGCCACAACATAATCCAGGCCTCAGTCTGAGGACGACAGACTCTGTGCAGTTGAGCAAAGCAGAGCCCTACCACACCGTCTCACTGTAATTTAAACATGAATTGAATCATGAATTTGTCAATAAAAGTTTTCACAAGTTACGTCAAATGTTTCTCTTACTGACTTTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU579782 lncRNA upstream 2346 43989952 ~ 43990487 (+) True G510932
TU579451 lncRNA upstream 11004 43937835 ~ 43981829 (+) True LOC110526005
TU579147 lncRNA upstream 457682 43534841 ~ 43535151 (+) True G510324
TU579134 lncRNA upstream 467984 43524623 ~ 43524849 (+) True G510311
TU579131 lncRNA upstream 470710 43521648 ~ 43522123 (+) True G510308
TU579797 lncRNA downstream 3628 43998783 ~ 43998991 (+) True G510946
TU579801 lncRNA downstream 6738 44001893 ~ 44002194 (+) True G510950
TU579837 lncRNA downstream 34535 44029690 ~ 44029918 (+) True G510986
TU579881 lncRNA downstream 94971 44090126 ~ 44090455 (+) True G511030
TU580051 lncRNA downstream 210205 44205360 ~ 44205588 (+) True G511194
XM_036980158.1 mRNA upstream 10948 43956177 ~ 43981885 (+) False LOC110526005
XM_036980159.1 mRNA upstream 10948 43956177 ~ 43981885 (+) False LOC110526005
XM_036980160.1 mRNA upstream 10948 43956177 ~ 43981885 (+) False LOC110526005
XM_036980161.1 mRNA upstream 10948 43956177 ~ 43981885 (+) False LOC110526005
XM_036980162.1 mRNA upstream 10948 43957042 ~ 43981885 (+) False LOC110526005
XR_002473856.2 mRNA downstream 263941 44259096 ~ 44260124 (+) True LOC110526008
XM_021606586.2 mRNA downstream 289697 44284852 ~ 44295238 (+) False LOC110526009
XM_036980166.1 mRNA downstream 289697 44284852 ~ 44295238 (+) True LOC110526009
XM_021606590.2 mRNA downstream 300459 44295614 ~ 44309360 (+) True LOC110526012
XR_002473857.2 mRNA downstream 342571 44337726 ~ 44339789 (+) False LOC110526014
TU579244 other upstream 334340 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 1422664 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 1423449 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 1860893 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 2521425 41469551 ~ 41471408 (+) True G507768
TU581131 other downstream 1189284 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 1222572 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 1640434 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 2191845 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 2364801 46359956 ~ 46360585 (+) True G513501

Expression Profile