RNA id: XR_002473857.2


Basic Information

Item Value
RNA id XR_002473857.2
length 1710
RNA type mRNA
GC content 0.36
exon number 2
gene id LOC110526014
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44337537 ~ 44339789 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTCTCGCCTCAGGTGGATCGGGGATGAGATGGATAAAAACTGGACGGTTGGATCTCGAGATAACAGATATAATGAGAAACTTGGGTTAAATAGAGAAGCCCGCTTTAGAGGCTTTGTATGCACAGCAATACAAATCACCGTCCTCATAATCTTTCTTAGAAAGCGACACCTGTAGATGTAAGTCACTGCAACGGCAAAACCAGCAACAGATGGTGCCTTCAGGATCCTGAGGAGAGAGAGCTGTCAGAATATTTGCACTGAGAAAAAGGATGacagccagccacagccagccGAGGTTCAGTGTGCACCGAGGTCATAATAACCATACCCCACAATCGGCAAGACAGTTAGGAACAGGGTACATTTTTTGTACTTTGTTGGCTAAGGAAAATGTTGTGCTTCGGAATTCATGTGACATAACATTATGTCACAGAGATTAAGTAACATTTTCAGTTCTTGTTTTATGGGTATAAGATAGTAGTACTGtgtgaatacatttttaattgCGTTATTTCCCAGGTTATTTTATTGTTTGACTCACTGCTTGGAATTCAGTAGGATTTAACAGACATAAATTGTGTTAGTATAATCACTCTCTGGCGGTTTTTCCCAGAATAAAACGGTGACGTCATCCTCCCTTGACCGTTACCAAAGGAAAAACGTACTAGAATTGCCCACGCGACTGTCATTACGTGGACGACCTTACACTTGAATGATCGATGCACTAATACACGATGTCAATTACCTAACTGAAAAAGCTTACTtgtattaaaaaaatacatgtttctaCTTTTTAGACGCCCAAAGGAGACATTTGAGCAATCTGGAAATGGTGCTCTGTGGAGAAATAGCACTACTTTTTACATAAGGTTCTGTAATAATTAGAGACCATGCAAAGTCTGGATTCTATCCTTACTAAATATGAAAGTCAATTTGTAAAGGTTTTTTTCTGCAGTAATTTTTATTAGGTGAATAATGATGTTAGTTGTATCAAATATTGATAAGGAAAAAAATAAGTCAAATCAACTGTTCTATTTTTTGAACTTTTGAAATTGGCTGGAGGCTCAGCATTGTTAAGGCAGATAATGTTTATGAAACCATGCAAGAAATCTTGTGTGCAAAAATAAGGGCATGCTATTCATGTTTACAGTACATAAGCTGTTTTTATATATCGCAAAAAACTGTAGTTTTCAATTGCAGTGCTGAATCTGTGTCTTTTATAAAGAATGTGTTCTTTACATGCTATTTACATTTGTATTACATTGTGAATTCTGTGCTCACTCTGGATAATAAAAGTTTCAAAGTAAAAATGCTTTCATGCTATCATTGTTATGCAAAAAGTAATGACAACATAAAACATTCAACAAATGCTGAACAATACTGCTTCAACCATGGTTTCATTGAAAAATCTGATACATACTGAAAACACACAACTTGTTTTCGAGTTTCTCAAATGTTTTGGTAGGTCTGATGTCATCAAACATAAGCTGTATCTTTACTAGAAATCAGGTGAAATGTATAACACGTAAATTGTTGCAAGAATGGTCACATTAGTGAAAGATCTACAAAATACATCAGCAAATTAGCAATTCATGTGCTGACATAAGCTACCCTGTACAATAATACTGACCAATAGCACACTGCTGTGCTGCACGGAGATAAGTTCACATTCTATTTCTTTGCAAGGATGGATGAGACAACTGTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580124 lncRNA upstream 53131 44284251 ~ 44284595 (+) True G511256
TU580112 lncRNA upstream 59419 44277848 ~ 44278307 (+) True G511249
TU580110 lncRNA upstream 62910 44274417 ~ 44274816 (+) True G511247
TU580055 lncRNA upstream 125808 44210154 ~ 44211918 (+) True G511197
TU580054 lncRNA upstream 126904 44209773 ~ 44210822 (+) False G511197
TU580152 lncRNA downstream 131 44339920 ~ 44342925 (+) True G511281
TU580157 lncRNA downstream 9336 44349125 ~ 44349943 (+) False G511284
TU580156 lncRNA downstream 9835 44349624 ~ 44350035 (+) True G511284
TU580155 lncRNA downstream 10459 44350248 ~ 44351084 (+) True G511283
TU580158 lncRNA downstream 12761 44352550 ~ 44352753 (+) True G511285
XM_021606590.2 mRNA upstream 28366 44295614 ~ 44309360 (+) True LOC110526012
XM_021606586.2 mRNA upstream 42488 44284852 ~ 44295238 (+) False LOC110526009
XM_036980166.1 mRNA upstream 42488 44284852 ~ 44295238 (+) True LOC110526009
XR_002473856.2 mRNA upstream 77602 44259096 ~ 44260124 (+) True LOC110526008
XR_005052113.1 mRNA upstream 342571 43992833 ~ 43995155 (+) False LOC118964874
XM_021606591.2 mRNA downstream 5693 44345482 ~ 44348787 (+) True LOC110526013
XR_005052115.1 mRNA downstream 390278 44730067 ~ 44740572 (+) False LOC110526020
XR_005052117.1 mRNA downstream 533596 44873385 ~ 44891032 (+) False LOC110526024
XR_005052116.1 mRNA downstream 533596 44873385 ~ 44891045 (+) False LOC110526024
XR_002473860.2 mRNA downstream 533596 44873385 ~ 44891056 (+) False LOC110526024
TU579244 other upstream 679233 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 1767557 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 1768342 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 2205786 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 2866318 41469551 ~ 41471408 (+) True G507768
TU581131 other downstream 844650 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 877938 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 1295800 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 1847211 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 2020167 46359956 ~ 46360585 (+) True G513501

Expression Profile