RNA id: XM_021606591.2


Basic Information

Item Value
RNA id XM_021606591.2
length 2094
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110526013
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44345482 ~ 44348787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACATCCgagtttggaaaatgttttgatGGTGGacgtcagattttaaaaatgttcGTTTATTTCCGAGGCTTTCTCTGAAGTGAATGTCGGCAACAGGTGTCTCTTGTAGAGTTATAGCCAGTTAGCGATGAATCTTACAGCAGGCTACTAATGAGTGGATGAGTACAGTAGCTAGCCCAGTGTCGTTAGCGTGCCCACAGGCTAACAAAGCAGTCTTTATCCAAAACGGCTTGCTAATATTTACttttttagctagctacctagcacTACGGAAATCTTTTTTTTTACAGCTCATGTATTCACAGCTACCACGTTTTCAAGCCTagtattgctagctagctagctagcaaaatgGGTTAGTTTGCGGTTATGGTGTTGACCAAACAGTTACTCTGTCATAGCCAGACACCCCAGTTGAACTGCAAGTCTCTACTGAACAGTTTATCCAGCTTGCTTGTTATTGGAGCATTCCTGCAATTAAATTCCTCTGGCTGGACTGGGTGGTCGCGGGGATCTCCTAAGGTCATGCCATGGTGCTACGAAGATTACTGAGAAAACGTTGGGTGCTAGGTGTGGTGTTTGGACTTTCTTTGATCTACTTCTTAACCAACACCCTGAAACAGGAGGAGAGAACCATAAGGGATCGCACTCTGTTGGAGGCCAGGGACCCGGACCACCGGATCCCATGGAAGGTCAGGTTTAACCTGGGCAACAGTAGCAGACCAATCACTCAGTGCCGGAACTCCATTCAGGGCAAGTCACTGCTCACAGATGAACTGGGTTATGTGTGTGAGAGGAAGGATCTGCTGGTGAACGGTTGCTGTAATGTCAACGCTCTGAGCTCCAGACAGTACATCTGTAAAAGTTGTCTGGCCAATGGCTGCTGTAACATCTACGAGTACTGTGTGTCCTGCTGCCTCCAGCCTGATAAGcaaCTTCTACTAGAGCATTTCCTGAACAGAGCTGCAGACGGCTTTCAGAACCTCTTCACCGCCGTGGAGGACCACTTTGAGCTGTGTTTAGCTAAGTGTCGAACTTCATCGCAGAGTGTCCAACATGAAAATACCTACAGAAATTCACAAGCAAAATACTGTTATGGAGAAAGTCCACCTGAACTCCTGCCTATATGATTGCTTGATCCTCTGGGACCTACGAGACTGAAAATAAACTAATAATAGTCCAACTAAGAGCCAAGGGACACACCTTGATGCTACTTGAGAAGACGTGCTTCATCTTGTGTCCCATACTGGCCTTGAACAGTCTGATACCATACAGTGCCATCAAGAACACCAGATCCATTTACTGTATAGAGGGAGTTTGGCAAACTTTGACTGACAATAACGGACACCATGTTGAACCTTTAGATATAATAATGTGAGTAATCGTCTCTACATATGGCTCTGAAGAACACTATCGTAACCTCACAACTATGGACAAATACTTTATGATTTTTCTATATTATTTACACTTCATAAGTGCATAGCTTCATAACTTCATCAGTGATGATCATCAGGTCTCATTCGCTCAACAGTTGGGATTCGCCTCATGCTGCCCATTGTTTCACATCATGGGCATGCAACTGaaagtgttttaaaatgtttcGCAACAGAACTAAAATGTGGGTTTCTTATTGGTTAAGTCCCTCCCTGTTTAAGTTGTTTACTTCCAAATGAACATGGCCCATGTTATAAAGGTTTTTATTTCAAGCCTGATCAATGTACTGAAGGAATGGTATTAGTTAAGTCTTCATTGTTGAGAAACAAACTACTAAGAATGTGTCATCACTTGTGTGTAGTTGTGCATGCATATTGACTGACGGCTATTTAATAACGTGACTGAAAGTAATCGGCTCACGGTTTACGTTGCAATGTCTATTTTTCAGAATAATTATCAGTATTGCATTTTGTATAGAAATTGTATCTATTTTACACTATGAAATAATTCTATATTATGATGACTAAAGACCCTATAGTTTATCTGGGGTCAGAGAGCTGTATCAACATGTAGAATTGGCATATTTTGATTGAATATATGACAAAATAACTTTTTCAACATTGTTTTTTTCATTGTCAATATACATACATTTTCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580152 lncRNA upstream 2557 44339920 ~ 44342925 (+) True G511281
TU580150 lncRNA upstream 7068 44337537 ~ 44338414 (+) True LOC110526014
TU580124 lncRNA upstream 60887 44284251 ~ 44284595 (+) True G511256
TU580112 lncRNA upstream 67175 44277848 ~ 44278307 (+) True G511249
TU580110 lncRNA upstream 70666 44274417 ~ 44274816 (+) True G511247
TU580157 lncRNA downstream 338 44349125 ~ 44349943 (+) False G511284
TU580156 lncRNA downstream 837 44349624 ~ 44350035 (+) True G511284
TU580155 lncRNA downstream 1461 44350248 ~ 44351084 (+) True G511283
TU580158 lncRNA downstream 3763 44352550 ~ 44352753 (+) True G511285
TU580277 lncRNA downstream 17188 44365975 ~ 44367235 (+) True G511389
XR_002473857.2 mRNA upstream 5693 44337726 ~ 44339789 (+) False LOC110526014
XM_021606590.2 mRNA upstream 36122 44295614 ~ 44309360 (+) True LOC110526012
XM_021606586.2 mRNA upstream 50244 44284852 ~ 44295238 (+) False LOC110526009
XM_036980166.1 mRNA upstream 50244 44284852 ~ 44295238 (+) True LOC110526009
XR_002473856.2 mRNA upstream 85358 44259096 ~ 44260124 (+) True LOC110526008
XR_005052115.1 mRNA downstream 381280 44730067 ~ 44740572 (+) False LOC110526020
XR_005052117.1 mRNA downstream 524598 44873385 ~ 44891032 (+) False LOC110526024
XR_005052116.1 mRNA downstream 524598 44873385 ~ 44891045 (+) False LOC110526024
XR_002473860.2 mRNA downstream 524598 44873385 ~ 44891056 (+) False LOC110526024
XM_021606601.2 mRNA downstream 524599 44873386 ~ 44891321 (+) False LOC110526024
TU579244 other upstream 686989 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 1775313 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 1776098 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 2213542 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 2874074 41469551 ~ 41471408 (+) True G507768
TU581131 other downstream 835652 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 868940 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 1286802 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 1838213 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 2011169 46359956 ~ 46360585 (+) True G513501

Expression Profile