RNA id: XM_021606593.2


Basic Information

Item Value
RNA id XM_021606593.2
length 3315
RNA type mRNA
GC content 0.45
exon number 11
gene id lrrc74b
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44411696 ~ 44435774 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAGCCAAGGTATGTTGCGGCAGCAGCCAAAAAGTTTACTGCACTGATTTCTAACACACTTAGATTTACATCAGCACATTCAAACTAGCAAAACTACCTGTGAAAGCTTACAAGCAACAACATATATTGGGTGGAAGACATTGTGTTGGAACCATGGTCGTTGGGAAGAAGTTGGCCAAAGAGTCCCTGCTGCCGTCTGTGCTGGAGGATGATGACGCggagacggagagcgagagagcgcagCTGGGTGGGATAGGGAGCCGACCACCCAGCAGACCCAGGAAAGCTTTCAGTAGGGGAAGTGTTGACAGACAGACAGTGACCCGGTCAGGGTCCGGCCGCCACTCTAGCCCTGAGGGGGAGGTGTCAGTCAGGGGTGAGAGAAaggaggatgagggggaggaggaggaagaagagggcaGTGGCGTTGGCGATGGAGACTcacaggagagggggaaggaatgtGTCATCACAGCTTCAGATGAGGACTATGACACAGACTTGGAGCTGGGAGATGTGAAGGAGGCGTATGACCCGACGGGCCAGACTCGATACAAGGAGGCGTGTAGAATGTTCAACGTAGTCCCTGTATCCTATTTCCTGAAACACATGGGCAATACTGAGCTAACCATGATGCACCATGGCCTCGGGCCTCAGGGCACCAAAGCACTGGCGGTTTCCTTGGTAACCAACACTTCCCTCCTGAAGCTGAACCTCAGGGATAATTGCATGGAAGGGACTGGCGGGGCTGCCATGGCCGAGATGTTAAAGGAGAACTGTTACATCACAGAGGTGGACCTGGGGGAGAACAGGCTGGGGGATTGTGGTGCCCAGACCCTGTCCAGTATGCTGCAGGAGAACACCACACTGGTCTCACTCAGCATGTCTGGGAACGAGCTGGCTGACCGGGCCGCACAACACCTGGCCCAGACCCTGACCTCCAACACCAAGCTGGAGACCCTAGACCTCAGTCACAACACCATAGGAGATGCAGCAGGTCAGGTCCTGGGACATGCTATCGCTGAGAACACAGGGCTGAGATCATTGAGTCTGGCCTGGAACTGTATACGTGGGAAAGGAGCGGTGGCTTTGGCTAAAGGCCTTGGGGCCAACATATTCCTCAGAACACTGGATCTGTCTTACAACGGCCTGGGTAAGGATGGAGCCGTAGCTTTAGGAGAGGCTCTCAAAGACAACAACACTCTAGAGGACCTCAATATAAGTAACAATCGAATACCCCCTGAAGGTGCGATCCGCTTCACCATGGGCCTCAAAGTAAACAAGACAATAAAAAAACTCAATATGGGGAGGAATCCTATACAGACTGCCGGGTGTTACGGAGTCCTGAAAGCAATCCAGGGAAACGCAGAATCAGCAATGGAGTGCCTGGACTTTTCTGACATAACAGTGAATCAGGACTTTGAGGATTTGTACGTTGCCTTAAAAGACATATTCCCAAACATCAGAGTCAAACATGGAGGAAGAATCAACACATTCAGAAAACCAAAGGCCTAATGGCCTGGTTTGAACCATCAAGAGGAAATACTTTCTTCAAGACAGCAAAGCATCTGGAATATCAGATGTTTATGAATTCTAGGTGAATTGAATGCACAATGCATTGACAACCTTTCTCACCTACAGCACCAAGACAACTTGTCAATTGTATTGAAGAACTACAGTACTTGTACTTTTACATCTTAGCTTGTGGAAATGGGTATTGCATTTTTGGAAACATCATGATCTGTATAAATGATATATTGCTTTCACATCCTATCTGTACTGTGTACATTTCTATATGGTCTGTGTTGGAAAATGTGTACAGATAATAGGGCCTACCCATCAGACCATCACACTCATATtttcaacctggactcaggggtagacgttaTATAGTAAACAAAATCCTGGGCACTCCAATTAGGGTGTGAATGTTATTTGCAATTAGATAGAGAAAATCGGACCTCTCTGAGATGAAAATGGATGGCCATCCCCTCAGCGAAGTTTATTTGACCTAAACCCTCCCTAGACGTTTGAAAAATAACAAgtgacccccccctccccctatacTCAAAAGAATAATGAAAACCTAAAGTGGATAGCAAAGAACATCCTTacctcacttcttggacagaccagagccttatgccattttagaaactgttcttagtcctgtaagcattacatggcaacACATGGCTTGGGGTCCAGAAGATTGTGGGTTCACAGACCACTATGGACCACAGTAGGGGTGGGAAAAGTTTTGAATTGATCTATCATTGTATTTCCAGGTCTGAGAGAAAAAAAAGCCTTTTGTAAAAATGTCATGCAATTCTGCATAattttacatactgtatttacaaaatattttttaataccacacaaattactgaaattacaggctaagaatggacagagagataggcctatctatgtgttcatcttatcatattcctccaatgccaaatcagtgtgtcttATTTGCAACGAAACTCTCCCTGTTTGcaaataatgaaatcagaaatgTCGTAAGGAATCTGAGCATGGTAGTTTCAAAAGttaggtctacctttccaccccagacagtaggcctacctttccaccccagacagtaggcctacctttccaccccagacagtaggcctgcctttccaccccagacagtaggccGACCGACACAGACAAATGTAAGttttaactgctggctactcttcttccTTGGCTTAACCCAACAGAGGTAACAAGTGTTTTCTAAAAGCTGTCTGAGGTTAAACATCTTCTATTGTACAGAATGTAaatagcttaatcaattgatagtgacagaattagattacttcccaagcaacCATGTTCTGTCTCCTCGGCTATAAAAGATTGTAGCTcagtctctgaatgtcaaagaaatTAAACAATGATATCCCCCATATGCATTCATGTCTTTCCAGtgtattttacagcttgtttctaaCATAAAGCATTGCGGACCAAAGTGCTGTTATTGATCACTTTATAACATTTTTGCAAAATCTTAAACTAACAATGTGCCTGTGCTTTTTGCATTTTCTTTAATAAAAGGTAGGCCTATGGCATACCCTCTCATACCCCGTCAATTTGAGTCCTGGTTTTAACTTAACAGCCCGTCACTGACATGGAATTTAGGCTATTTGAAGAGTGCATGGAGGGTGGAGGAATTGGCCAACAAATCTACGTATGTCAAAAAGAAAGGAAGACCAAGGCTCTCTCTTCATACAgttaattaaaatgtatttgtatggcatgttcaatggaaacaaagaTTAAAAACTCAGATGCATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580266 lncRNA downstream 56444 44354935 ~ 44355252 (-) True G511379
TU580263 lncRNA downstream 59706 44350427 ~ 44351990 (-) True G511376
TU580262 lncRNA downstream 61533 44349657 ~ 44350163 (-) True G511375
TU580187 lncRNA downstream 68794 44342081 ~ 44342902 (-) True fbxw8
TU580185 lncRNA downstream 69335 44339335 ~ 44342361 (-) False fbxw8
TU580746 lncRNA upstream 592 44436366 ~ 44438809 (-) True nos1
TU580806 lncRNA upstream 88129 44523903 ~ 44550277 (-) True G511885
TU580886 lncRNA upstream 206625 44642399 ~ 44642599 (-) True G511957
TU580887 lncRNA upstream 207511 44643285 ~ 44643534 (-) True G511958
TU580896 lncRNA upstream 223119 44658893 ~ 44659487 (-) True G511967
LOC110526901 mRNA downstream 1749 44402811 ~ 44409947 (-) True LOC110526901
XM_021606592.2 mRNA downstream 17677 44365856 ~ 44394019 (-) True LOC110526015
XM_036980167.1 mRNA downstream 66247 44309894 ~ 44345449 (-) False fbxw8
XM_036980168.1 mRNA downstream 66247 44309894 ~ 44345449 (-) False fbxw8
XM_036980169.1 mRNA downstream 66247 44309894 ~ 44345449 (-) False fbxw8
XM_036980172.1 mRNA upstream 518 44436292 ~ 44501179 (-) False nos1
XM_036980173.1 mRNA upstream 518 44436292 ~ 44501179 (-) False nos1
XM_036980174.1 mRNA upstream 4266 44440040 ~ 44501179 (-) False nos1
XM_036981750.1 mRNA upstream 100235 44536009 ~ 44592618 (-) True LOC110526017
XM_036981751.1 mRNA upstream 208073 44643847 ~ 44717089 (-) True LOC118965027
TU580171 other downstream 199873 44209465 ~ 44211823 (-) False nf2a
TU580173 other downstream 201031 44209338 ~ 44210665 (-) False nf2a
TU580172 other downstream 201031 44209465 ~ 44210665 (-) True nf2a
TU579749 other downstream 463307 43946338 ~ 43948389 (-) True prodhb
TU579133 other downstream 887588 43523714 ~ 43524108 (-) True G510310
TU581656 other upstream 838864 45274638 ~ 45276387 (-) True znrf3
TU583050 other upstream 1924114 46359888 ~ 46360886 (-) True apba1a
TU583053 other upstream 1934916 46370690 ~ 46430360 (-) True LOC110526044
TU583552 other upstream 2474884 46910658 ~ 46910950 (-) True G514434
TU583955 other upstream 2580388 47016162 ~ 47016496 (-) True G514777

Expression Profile