RNA id: XM_036980172.1


Basic Information

Item Value
RNA id XM_036980172.1
length 7755
RNA type mRNA
GC content 0.48
exon number 29
gene id nos1
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44436292 ~ 44501179 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCGTGCTCCATATTTATACGGCACCCTGGCGCGCAGAGAAGCACAGGCATGCCGCGACTCTAATGAGACAACGCACACAAGTGGGACTTGAGGAGCTCGAGCGAAGCGAACAACCTGTGTGTGCAGATTCCGAGGACAACGAATACGCACGAGAGGAGTTCATCTGTCACTTGTATTTGCAACAGTTCTTTGTGCAAGTGAACTTATTGTTCTCAGAGATCCCTGAGTGGAAATACACCGCCAGACACCATGCAGGAGTCTGAGCCCACAGTGTGCCAGCTGCAGCCCAACATCATCTCGGTGCGTCTCTTCAAGAGAAAGGTGGGTGGGCTGGGCTTCCTTGTCAAGCAGCGCGTCTGCAAGCCGCCCGTCATAGTGTCCGACCTGATCCGGGGCGGGTCTGCCGAAGAGTGTGGCCTGGTCCAGGTGGGGGACATAGTACTGGCAGTCAACAACAAGCCCCTGGTGGACCTCAGCTATGAGCGGGCCCTAGAGACCCTAAAGAATGTGTCCCCTGAGAGGCACGCTGTCCTCATCCTCCGGGGCCCAGAGGGCTTCACCACCCACCTGGAGACCACCCTGACTGGGGATGGACATCAGAGGACCGTCAGGGTCACCAGGCCAGTCTTCCCCGCTTCCAAGTCCTACGAGCGCTGCTGTCCGTTAAGCCCCCTTAGCCCGGGGCAGGGAGGCAAGGACCCACAGCAGCTGAGGGCCATCGAGAACCTGTCCTCCCCCTCGGTGACCCCGTTACACAGAGAGGCCATGCTCCAGAGGGGAGGAGTGCAGGCACTGATCGCAGCCCAAGATCCCATGCTCAGAGACAGGGGCTGCGGGGCGCTGCTTCTGAACGGTGTGGAGGAGAACAACGACATGCTGAAGGAGATCGAGCCGGTGCTGCAGCTGATCAAGAACAGTAAGAGGGAGATCAacggagaggaacagaggaccaTACAGCGCAGGGACGCTGAGGTGCAGGTGGACCGGGACCTTGGTATGGGAAATGGTATGTCACCCCAGCTGGCGTCTGATAAGAACAGTGTGTGTGAAGACCTGTGGAGGAAGGACAACAACATGCAGACGGTGCTCACCAACCCTTACTCTGAGAAGGACGAGCCTCCAGCACAGGGGAGGATCTCCCCTAACAAGGCTCTTATGAATGGCAGCCCCTCCAAATGCCCACGCTTCATGAAGATCAAGAATGTGGAGACTGGAGTCACTTACAATGACACTCTACACCACAGCTCTAGTAAGTTACCGCTCtgcactgagtgtgtgtgtttcgggTCCATCATGACACCTAGCCAGGGGAGCCGCAAGCCGGACGAATCTCGAACCAAAGAGGAGCTGCTGCCGCTGGCTACTGACTTCATAGACCAGTACTACACCAGCATCAAAAGGTTTGGCTCGAAGGCCTACGTAGACCGGCTGGAGGAGGTGACTAAGGAGATTGAGGCCTCAGGGACGTACCAGCTGAAGGACACTGAGCTGATCTATGGAGCCAAGCACGCCTGGAGGAACGCTGCCCGCTGTGTAGGACGCATTCAGTGGTCCAAACTACAAGTATTTGATGCCAGAGACTGCACAACGGCTCATGGAATGTACAATTACATCTGCAACCACATCAAGTATGCCACTAACAAAGGCAACCTGAGATCTGCCATTACCATATTTCCTCAGAGGACAGATGGCAAGCGCGACTTTCGGGTATGGAACACACAGCTGATTCGCTATGCCGGTTACAAGCAGCCCGATGGTCAGATTCTGGGAGACCCAGCCAACGTGGAATTCACTGAGATCTGCATCCAGCAGGGCTGGAAGGCTCCCAAGGGTCGATTCGACGTGCTGCCCCTCCTGCTGCAATCCAATGGGAACGACCCAGAGCTGTTTGAGATCCCTCAAGACCTTATTCTGGAGGTGCAGATCACCCATCCCAAGTATGATTGGTTCAAGGACTTGAATCTGAAGTGGTACAGCCTACCTGCTGTATCTAGCATGCTGCTAGAGGTGGGGGGGCTGGAATTCACCGCCTGTCCGTTCAGTGGCTGGTACATGGGTACAGAGATCGGAGTCAGGGACTTCTGTGACAGCTCTCGTTACAACATCTTGGAGGAAGTGGCCAGTCTGATGGCTCTGGATACCAGAAAGACCTCTTCTCTGTGGAAGGACCAGGCACTGGTGGAGATCAACATAGCAGTCCTCTACAGTTTTCAGTCTTCTAAGGTAACCATAGTGGACCACCACTCTGCCACAGAGTCCTTCATGAAGCACATGGAGAATGAGATCAGGGTGCGGGGGGGCTGCCCGGGGGACTGGGTCTGGATTGTACCCCCAATGTCTGGAAGCATCACCCCAGTTTTTCACCAGGAGATGCTCAACTATCGCCTCACGCCATCCTTCGAGTATCagGCTGACCCATGGAATAACCATGTGTGGAAAGTAAACAATGGGACACCCACCAAGAAAAGAGCCATTGGCTTCAAGAAACTGGCCaagGCTGTGAAGTTTTCAGCCAAGCTAATGGGCCAGGCCATGGCTAAGAGAGTCAAAGCTACGATACTATTCGCCACCGAGACCGGAAAGTCTCAAGACTATGCAAAAACCTTATGTGAGATTTTCAAGCATGCCTTTGATGCAAAGGTAATGTCAATGGATGAGTACGACATGGTGGACCTGGAGCATGAAACACTTGTGTTGGCGGTGACCAGCACCTTTGGTAATGGAGATCCACCTGAAAATGGAGAGaAATTCGGAGCTGCCTTGATGGAGATGAGACATCCAACATCTAACACAGAGGACCGAAAGAGTTACAAGGTGCGTTTCAACAGCGTGTCCTCCTACTCAGACACCCGCAAATCCTCCAGTGATGAACCTGAGCCCAGGGTCAACTTTGAAAGCACCGGACCCCTCGCCAACGTCAGgTTCTCAGTGTTTGGCCTTGGCTCAAGAGCCTACCCACACTTCTGTGCTTTTGCCCACGCTGTGGACACGCTGCTCGAGGAGCTGGGGGGGGAGCGCATCCTACGCATGGGGGAGGGAGATGAGCTGTGTGGCCAGGAAGAGTCCTTCAGAAACTGGGCCAAGAAGGTTTTCAAGGCTGCCTGTGATGTGTTCTGCATTGGAGACGTGAACATCGAGAAGGCACATGATTCGTTGATCAGTAATGATCGAAGCTGGAAGAAGAGCAAATTCCGCCTCACCTACACAGCTGAGGCCCCTGCACTAACACAAGCACTCTACAGCATCCACAAGAAGAAGGTCTATGGAGCCAAGATCTTACAGAGCGAAAACCTACAAAGTTCCACATCCAACAGTCGCTCCACCATATTTGTTCGACTTCACACAAATAACGAGGACAGCCTGACGTACCAGCCCGGCGACCATCTGGGCATCTTCCCTGGCAACCATGAGGACCTGATTACGGCCCTTATAGAGAAGCTAGAGGATGCCCCACCTGTCAATCAGATCGTCAAGGTGGAGTTCCTAGAGGAGAGGAACACAGCCCTGGGTGTGATCAGTAACTGGCTAGAAGAGCCCCGGATTCCCCCCTGCACCATCTACCAGGCCTTCCAGTACTTCCTGGACATCACCACACCCCCCAGTCCTGTCCTGCTGCAGCAGTTTGCCTCCCTCGCCACCAATGACAAGCAGAGGAAGAAGTTGGAGACTCTCAGTAAGgGCTTGCAGGAGTATGAGGAATGGAAGTGGTACAACAACCCAACTATGGTGGAGGTTTTGGAGGAGTTCCCCTCCATTCAGATGCCATCCACCCTGCTGCTGACCCAGCTGCCTTTGCTCCAGCCCAGATACTACTCCATTAGCTCCTCACCGGACGTCCACCCTGGGGAGATACACCTCACCGTGGCCGTGGTGTCATACAAAACCAGGGATGGAGAGGGCCCTATCCACCATGGAGTGTGTTCATCATGGCTCAACAGAATAGAGGCAGAAGAAATGGTCCCCTGCTTTGTTAGAGGTGCTCCTACATTCCGATTGCCAAAGGACCACAGAGCTCCGTGTATCCTTGTTGGTCCAGGCACTGGGATCGCCCCCTTCAGAAGCTTCTGGGAACAGAAGCTTTTCGATTATGAACGCGATGGGATCAAATCCTGCCCTATGATCCTGGTATTTGGGTGCCGGCAGTCCCAGATAGACCACATCTACAAGGAGGAGACTATCCAGGCTAAGAACAAGGAGGTGTTCAAAGAGCTCTACACAGCCTACTCCAGAGAGCCTGGTAGACCAAAGAAATATGTGCAGGATGTGCTTCGTGAGAAGCTGTCAGAGACTGTGTACCAGTgtctgagggaggagggaggacacaTCTATGTGTGTGGGGACGTGGGTATGGCCGGGGATGTCCTCAAGACCGTCCAGCAGATCATCAAATTGCAGGGAAACATGACACTGGAGGACGCTGGGTTCTACATCAGCAAACTCCGAGACGAGAACCGTTATCACGAGGACATATTCGGTGTCACGCTGCGTACCTATGAGGTCACCAACCGACTGCGTTCAGAATCCATCGCCTACATCGAGGAAAGCAAAAAGGACTCTGACGAgGTGTTCTGCTCGTAGAACCATAAGTGGGGCTTCCGGATCTTTCTGATGTGGACCAATTGGAAGGGCCGTATGCACAGTGGAGCAGGGAAATGAGTGACACTACAGCTGGTCGATAATACTGTGCCAAGTTTTGTACTGTAAAGAATATCTTTGGGTTTGTTTTTGTTCTCTTTTATACCAGTTCTGCTTCGTCATGGTCAGTCAGGCTCTGCACTTAGTCTGTCGTAACGtttgaaatattttattttacaagAACATTGATGTTTTGTTAAATTGATTACTTTCTGATTTCATTATGCGTCATAATGTGCACCCAGTATTATACCTGCCACTTTGTTGATGCATGAGCAAGATGAGAAATATTAGTTCATAAATATATCATACTGTTTGTTAGCTATTTAATGTTAGTCAAAACCTTTTGCTAAACTTTTATATTTGCAGGACTACTTGTGGTACCTGGAAACAAGGTCACAATGCTTTGATTGGCGAATCAGTTTATGTTCCATTCCCAACCAACTGACTCTGGTGCATTTCAGTGTATACAAGGCCAAACCCATGTCAGTCAGAGCTGGTCTAGCCTGCTTTGGTGTGTATTGTTCATAACTGAgattccagttttttttttttttttttttttttttttttttttttttaaaggttttgTAAGAGTGtgggcgagagagaaagggatggagagaatgcaagagagagagaactagatacAGACAGGCTATGCTCGGAGAGCAGTGAATAACTATGAACTGGATTTGGTTAACCTATAACCTCAACCTTCCGGCCACACGGTCATCCAAAACTACAATAGTGTTCAGACTCTCCTTGAAAGTCCATTAAAATGCATCTGCTCCTCTTATCAGCTTTCTCTGTTTCCTGCTTGTCTGTCTCTCCGCCTGCCTGTCAGAATATAAGTTGTCTCACCATTTTGTGGTCTGGTTTCACAACAGTAACTGCATATAGATGTGGATGAAAGCCATTGAAATGTTTGAAATGTCATGCCATGGGAAAGCCTAtgcatgtgtatgtatctctTGTATACATTCTCATAACCAATATTTAAGTATATTACACACAAAAACAACTACGTATAATCTAGAGGGCTCTGCATCTTATAAATGGTATACAGTATTATCAAAGGAAAAGTCCATGGTACATATCTGACTGCCTTCCTATCCTATTTATTCGCTAAGACCAAATGCTGAGGTATCGGGGTGCTGTCTAATGGCTTGAAAGTAATTTGCATAGTATTTACAATGGGGAAAGAGGAAGGAACGGATTCATGATTTCAAATTGATCAAGAGGTTGGGTGTTGGGTTGCTATACTTTGCTGGTTCTCCTTGACCAACCATTACCATATCCGTGCGATCTCCATTTTTACCACCATTATAACCTTCCATGTAACCAGAGTTTCATACATGGCTATCTGTATGTAACTATCCATGTAAAGGAACCCTGCAGTGTCTGTCTTATCAGATCTGGATTTAGGGCAGAGTGGCGTAAATCTCACGAGGCAGAAATCTCGAATAGAAGAAATCTCAAACAGCAGAAATCTCATGTTGACATCAGTGCACGAGTAGATGAGTGTTGCTTTATGGTTTTATCGTTCCttcttgtctgtctgtccatctctcggTCTTTCACTCAGTaactctatccctctttctctctgccaccaCCTCCAACTGCCTGCTCAGATGACTTGTGATGCTGCCAcagctccccctctcctccatcctcactGAGACCTGACACCTGTCTGAAGGTCTATCaagcgctgtgtgtgtgcgtgcatgcgtccATGAATGCTGTGTGATAACCACGACAAAATACTAAAGTACTTTTTGcgaaaaacaaaatgtatttgtctGCATGCATTCTCCATTCGCTGTAACCATCCACTTAATACCCTCGCATGCTCTTTGTCTTTGTTGAGAATTAAATGAACCTTCCTTCTGCCCCCCCCACCCGCACACACACCAACCTTGAATGCTACAGCATGTATGCCCTCTGCAAACCCAAACAATTCTGATTGCATTCTCAAGATCAAGAAATAGATCATACAGGTCATTGCGTTTGATTGTTGTCATTACAATTCAACTATGTTGAGTTTACTTAATTATTAAATAAGGTTAAGTATGATATCTTAATTAAAATGATATGTTTATTGCTGATGGGTTTTGGGCGCAAGCTCGTGTCAAAGCACTGTTTTTACTTCGTTTCCCACTTTTCACTGAGCATCATTTGAAGGCCATGCCTTTGCAGGGCTGCTGTTTCTATTCTAAACATGTCATTGACGTTTTGTGATAACATTTCCAAGTGGCAACCAACTCCGCAGTAACCTGTGGATTTTCTTTTATTCCTTAAGTACTTCCTTTGTTTCCAAACTAAAATGGCCACCAGCATGATTGAAACGTAATGGCTTTCTGTGTTCTATCTCTCTGCTACTTATTGGCGCATATAGAGTACGTTTTTAATGGGGGaacttttttgtttttgtttggggATAAATAGGCAAACCTGTTTAATTGTTCCTCTTGCTGAATGTTTTCTTCTTCCACATTCATTTCTTTAAGCAGGTTTTGGGGGATTAGAAATGAGGGCTGCCAAAACTCTGTAAAAcgtgcaacaacaacaaacaaacacaaacaaacaaaacaaaaatatataaatatagcaTATATActaagacaaaaacaaaacaaaactatTTGAACTAACTTTTTCTAAGAATGTATTTTGAtgatttaattattattattgttatgtcTCTTCTGCTTGGTAAAAAAAAGAACCCATAATAAAACAAACAAGGACTACAGTGGTCTCCCTGATATCCTTTAGGCACGGGAAAAACCACAGCACCAGCTGAATGCATGATGTACTGTACCTCTgtcctctttaaaaaaaaaaaaaaaaaagctctgTCTACCTACCAGCACTGTGTCACTCATTACGACTGtgactccatccatccatacagtgTGATGGGACAGACGGTTGATGTGCTCAAGGGGTTTCTGTGTTTGTATCGCTGCTGCTAAACTCCAACAACCCAAACAGCCTCTGCTATATGCTCCTTGGTGTGGAATTGATCAACCTTGGCGGTTTCCATTTTAATGCATACTGCAAGGAACTTTGCATTtacttaataaaaaaaaacattaacagTATGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580726 lncRNA downstream 21523 44414221 ~ 44414769 (-) True lrrc74b
TU580724 lncRNA downstream 23538 44411908 ~ 44412754 (-) False lrrc74b
TU580266 lncRNA downstream 81040 44354935 ~ 44355252 (-) True G511379
TU580263 lncRNA downstream 84302 44350427 ~ 44351990 (-) True G511376
TU580262 lncRNA downstream 86129 44349657 ~ 44350163 (-) True G511375
TU580806 lncRNA upstream 22724 44523903 ~ 44550277 (-) True G511885
TU580886 lncRNA upstream 141220 44642399 ~ 44642599 (-) True G511957
TU580887 lncRNA upstream 142106 44643285 ~ 44643534 (-) True G511958
TU580896 lncRNA upstream 157714 44658893 ~ 44659487 (-) True G511967
TU580938 lncRNA upstream 226643 44727822 ~ 44728825 (-) True G512008
XM_021606593.2 mRNA downstream 518 44411696 ~ 44435774 (-) False lrrc74b
LOC110526901 mRNA downstream 26345 44402811 ~ 44409947 (-) True LOC110526901
XM_021606592.2 mRNA downstream 42273 44365856 ~ 44394019 (-) True LOC110526015
XM_036980167.1 mRNA downstream 90843 44309894 ~ 44345449 (-) False fbxw8
XM_036981750.1 mRNA upstream 34830 44536009 ~ 44592618 (-) True LOC110526017
XM_036981751.1 mRNA upstream 142668 44643847 ~ 44717089 (-) True LOC118965027
XM_021606597.2 mRNA upstream 216337 44717516 ~ 44718429 (-) True LOC110526019
XM_021606595.2 mRNA upstream 239760 44740939 ~ 44748610 (-) True wsb2
XM_021606599.2 mRNA upstream 248422 44749601 ~ 44756143 (-) True LOC110526021
TU580171 other downstream 224469 44209465 ~ 44211823 (-) False nf2a
TU580173 other downstream 225627 44209338 ~ 44210665 (-) False nf2a
TU580172 other downstream 225627 44209465 ~ 44210665 (-) True nf2a
TU579749 other downstream 487903 43946338 ~ 43948389 (-) True prodhb
TU579133 other downstream 912184 43523714 ~ 43524108 (-) True G510310
TU581656 other upstream 773459 45274638 ~ 45276387 (-) True znrf3
TU583050 other upstream 1858709 46359888 ~ 46360886 (-) True apba1a
TU583053 other upstream 1869511 46370690 ~ 46430360 (-) True LOC110526044
TU583552 other upstream 2409479 46910658 ~ 46910950 (-) True G514434
TU583955 other upstream 2514983 47016162 ~ 47016496 (-) True G514777

Expression Profile