RNA id: XM_036981751.1


Basic Information

Item Value
RNA id XM_036981751.1
length 3114
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC118965027
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44643847 ~ 44717089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTGTACACGGTTGACTTAAATTGTGGCCCCCCTGCCAGTTTCCCCTAGGCAAAGGCAAAATTGGGTATATCGTGACCATGAATGCAAACAAAGTATGTTGGTGCGGTTAAGTTTCAAAACTATTTGTATGAGATATTGTGGACCACAATGTGTACTGCCATATGGATTGTACAGACAGGTATGCTAATCAACCATTTGGGAATAAATTTGACTGACTGAAATACATGCAAATGTAGCCTAGTAGTACTTAGATGTGCTCTTATCAAAAAGTGATTGACAATCTTTTAATCTGGCAGTTGAATCAAAGTATTTAATTCAAGAGACAAAATAGGGTGCTTAAATCATTAACCCAAATAATCTTGTTTTGTTGGAGGCTCAGACAGCCTACAATAAACTATTTTGATTGCCTGTTTGTGCTTGATGAGCTGTATTTCtgatcacatactgtacattaggcACAACACAGACATTCTAGAATTCACTAGAAACTGGGCAACAATGTAGTGTAGCCTTGGAAGCCAAGTATCACTTTTTAATTGTGTGATGAGGGATTTCCAGCAGGCAGCACAACACACAGCACCATGCCTGTTCAGTCCAGCAGTGAGACACaatgctgtctgtctctgcaggTGATGGAGGAAATGTCATAATCACTGGTTCCCCACTACCTGCCTCATTCAAGATGACACTCACTTGTAATGCTCTATATCGCCCCCCTGTTTATTTCCCCCCACCCACAGAAGAGAAAGAGCTGTCATAAAGTATAATTCAGTAAGAGATGTTGGCCTGGCCTACTCAGGCTCACTCAGAGTTCTGTGATTTAATTTGGACAGACAGGCAATAACTGTTGCAGTTCATTTGGAGTATACAAGTGTAACATAAAATGTatggttattgtgtgtgtgtgcagtggagggtaaacacaagTACTTTTTTTGCACAACAGCTTGCTCACCTTttgttaaaaaaatgtattgaaagtATAAAGTTTTTCACTGCAAGCAGTGATCAGTTATTTTTTACTaacacatctgtgtgtgtgtgtgtgtgtggattgacCAAGATACAAGTAGCCTTAAAAGGGCAGATGTAGAAAAGCCTAGTTAAAAAAATTATCCCAATTTGGTTTGGTgaaaaatgacaatacattacaattaTAATGTGGAGCTGATGATGGAAACTACCTACTGGTATGAAGTTAAAACTGAGTCCACGCTCACTGCACGGATATAATCTCGCGATAACTCCTCCTACTACATGCAGCATCACTCGTTGATGGTGCCTCAAACGGTGCCCCCCCTTCTCCCGCAGCTTCCATGGGCAATGCTGTTGCTGTGGATTTGATTGACGTGAAACATGTCGGTGTGGTGGTGGGAGCGAACCGGGATGCAGCTGCTGGCATGTGTGACGGTAGAACCTGTACCCAATCCACACAGCATCACGTGTAAAATTATTATAAGAAGCTGCTTTAGTGTTATTGATCAGCTATGATTTTTATTTGAAATGAACAAACAGAACGCTGACTGGATTTATTAGATAAGGCTTGATCGGTTGTGTTCTGACTTGTATTTCTGTTGAGGAGGTATAGCCTAGGCTATCTGCATCATGTGTTTGACGATATAGCCCTCAGCATCAGTACCAGGCTCAATCAGAAACACCTTGATGAACCACCACCTGGAATACAAGGACAATTACAATGAAGTCGACTTTCACATAGATCACATCTCGTTTCTAAACCAGTGTATATAATAGATTATAACACCACGTTGGCTGGCGTTTTGCAGGGTACTTTATTACATGGAGCTATTTCCACCTTTTTGTCCCCGAGTAGAGTATTTTTTGTTGAAGTACACATAAAAACGACCACTGCTCGCAAACTATGGACGAGGAGAATATGACAAAAAGCGACGAGCAGCATTTGAGTTTGCAAAAAGCTTTGCAGCAGTGCGAGTTGGTTCAAAATATGATAGACATAAGCATTTCCAGCTTGGAGGGTTTGAGGACCAAATGTGCCACATCCAACGACTTGACACAAAAAGAAATACGAACGCTAGAGGGAAAGCTGGTGAAGTACTTCAGTCGCCAGCTGTCCTGTAAGGTGAGAGTGGCCTCACAGGAGGACAGCACTGAGCTACAGGACTTCCCCAGACTGGGACACTGGTTCCGCATCGTCAACCTGAGGAAGGAGGTCACTGAGgagATGGATCCGGGCGACGTGACTCTGGAGGGGCTGCTGGAGATGAGTGATGAGCAGGTGTGTGAGGCCATGGAGAAGTTTGGAGCCAACGACGAGGAGTGTGCTCGGCTCAACGCCTCTCTGTCCTGCCTCAGGAAGGCCCACCAGTCCGAACAACTCGAGGATGACTCATTGCCCAATAACGGAGcaGGCAGCCATGCCAAGCAGGACTGGTCCATCCAGTGGCCCACCTCTGAGTCTGGCAAGGAGAacactcccttcccctctccagaACCCAGCCAGTGGGTCCGCTTCCAGCTCTCCCAAAGCCCCATGGTCCAGGCCAAGTACAACCAGCAGCACCACAGCCAGTGCCACAGCCCCCAGTCATTGCTACCCTATCCGTATGGCCCCTATGTCCAGCCAGACCGCCTCACCGTGGACAGCCACCTGGGACTGGGGGCCTTCCCCCCCATGGACACGGGTCATCGATCCCTGCCCCCCTCGCCCCGTCAGAGGCACTTTGCCCACACCCCTCCCCGGACTCCACTGGTGGTGAACACCATGACCCCCCCGGGCACGCCCCCCATGAGGCGCAGAAACAAGGTGAAGGCCCCCGGGACGCCCCCACCGCCCAGCCGAAAGCTCATCCACCTGCTGCCGGGCTTCACGGCGCTACACCGCTCCAAGTCACACGAGTTCCAGCAGGGCAACCGCATAGTTCTGGAGGCAGCTGACATGCAGACACTCAAagtgaAGCAGAAGAAGTCCAAGCCTCAGCACCTGAAGATCAACAGCAGTGTGGGGAGCTGTGAGAACCTCCCTACCCAACGctcacccctccactcctctgacCATCGCTCACTCCGTTCCTTCTTCTTCCCCACCTTCATCCCCTCCACTCCCCCCGTCCACTCCGATGCAAacGAAGACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580887 lncRNA downstream 313 44643285 ~ 44643534 (-) True G511958
TU580886 lncRNA downstream 1248 44642399 ~ 44642599 (-) True G511957
TU580806 lncRNA downstream 93570 44523903 ~ 44550277 (-) True G511885
TU580746 lncRNA downstream 205038 44436366 ~ 44438809 (-) True nos1
TU580726 lncRNA downstream 229078 44414221 ~ 44414769 (-) True lrrc74b
TU580938 lncRNA upstream 10733 44727822 ~ 44728825 (-) True G512008
TU580939 lncRNA upstream 11804 44728893 ~ 44729483 (-) True G512009
TU581020 lncRNA upstream 159536 44876625 ~ 44878344 (-) True G512084
TU581570 lncRNA upstream 434195 45151284 ~ 45152892 (-) True G512599
TU581621 lncRNA upstream 500151 45217240 ~ 45217441 (-) True G512650
XM_036981750.1 mRNA downstream 51229 44536009 ~ 44592618 (-) True LOC110526017
XM_036980172.1 mRNA downstream 142668 44436292 ~ 44501179 (-) False nos1
XM_036980173.1 mRNA downstream 142668 44436292 ~ 44501179 (-) False nos1
XM_036980174.1 mRNA downstream 142668 44440040 ~ 44501179 (-) False nos1
XM_021606593.2 mRNA downstream 208073 44411696 ~ 44435774 (-) False lrrc74b
XM_021606597.2 mRNA upstream 427 44717516 ~ 44718429 (-) True LOC110526019
XM_021606595.2 mRNA upstream 23850 44740939 ~ 44748610 (-) True wsb2
XM_021606599.2 mRNA upstream 32512 44749601 ~ 44756143 (-) True LOC110526021
XM_036980178.1 mRNA upstream 45802 44762891 ~ 44855138 (-) False taok3a
XM_036980177.1 mRNA upstream 45802 44762891 ~ 44855426 (-) False taok3a
TU580171 other downstream 432024 44209465 ~ 44211823 (-) False nf2a
TU580173 other downstream 433182 44209338 ~ 44210665 (-) False nf2a
TU580172 other downstream 433182 44209465 ~ 44210665 (-) True nf2a
TU579749 other downstream 695458 43946338 ~ 43948389 (-) True prodhb
TU579133 other downstream 1119739 43523714 ~ 43524108 (-) True G510310
TU581656 other upstream 557549 45274638 ~ 45276387 (-) True znrf3
TU583050 other upstream 1642799 46359888 ~ 46360886 (-) True apba1a
TU583053 other upstream 1653601 46370690 ~ 46430360 (-) True LOC110526044
TU583552 other upstream 2193569 46910658 ~ 46910950 (-) True G514434
TU583955 other upstream 2299073 47016162 ~ 47016496 (-) True G514777

Expression Profile