RNA id: XR_005052115.1



Basic Information


Item Value
RNA id XR_005052115.1
length 566
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110526020
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44730067 ~ 44740687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgacaaataacatttgatttgatttgattttaaccatgtgtatgctaccaattacattttattttatttgaacacATGATTATTTAAAGACCCCGTATCCTACACAGGCAGCCCTTACTTCAATTCAcaaaatgtgtatttatttttttggtcTTTGTCTTCCAAGAAGGGTTTCAAGTTGGTGATACTGGACGAGGCCGATACTATGACCCGGGATGCCCAGAATGCATTGCGGCGAGTCATTGAGAagtacacagagaacacacattcTGCCTGATCTATAACTCCAGATGCACCAGGTTCCGTCCTGTCTCAGGACCAGATGATCCCCAGGCTGGAGTATGTTATTCaacaggagagCATTGATATAACTCCAGATGGAATAAAAGCTATTGTGACCCTATCATCGGGAGACATGAGAAGATCACTCAACGTACTGCAGTGGACTTTCATCCTGTTTTTCGGATGGGTTTGCTTATCAAGTTGGCAGATATTGAGTACCGGCTGGCCTCGGGACT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU580477 lncRNA upstream 74499 44655225 ~ 44655568 (+) True G511577
TU580473 lncRNA upstream 84619 44645224 ~ 44645448 (+) True G511573
TU580464 lncRNA upstream 106349 44623249 ~ 44623718 (+) True G511564
TU580435 lncRNA upstream 141546 44588241 ~ 44588521 (+) True G511535
TU580432 lncRNA upstream 146704 44580252 ~ 44583363 (+) True G511532
TU580547 lncRNA downstream 9069 44749641 ~ 44750048 (+) True G511647
TU580696 lncRNA downstream 279675 45020247 ~ 45045920 (+) True G511781
TU581127 lncRNA downstream 317139 45057711 ~ 45058035 (+) True G512188
TU581221 lncRNA downstream 466687 45207259 ~ 45207720 (+) True G512277
TU581228 lncRNA downstream 472210 45212782 ~ 45213075 (+) True G512284
XM_021606591.2 mRNA upstream 381280 44345482 ~ 44348787 (+) True LOC110526013
XR_002473857.2 mRNA upstream 390278 44337726 ~ 44339789 (+) False LOC110526014
XM_021606590.2 mRNA upstream 420707 44295614 ~ 44309360 (+) True LOC110526012
XM_021606586.2 mRNA upstream 434829 44284852 ~ 44295238 (+) False LOC110526009
XM_036980166.1 mRNA upstream 434829 44284852 ~ 44295238 (+) True LOC110526009
XR_005052117.1 mRNA downstream 132813 44873385 ~ 44891032 (+) False LOC110526024
XR_005052116.1 mRNA downstream 132813 44873385 ~ 44891045 (+) False LOC110526024
XR_002473860.2 mRNA downstream 132813 44873385 ~ 44891056 (+) False LOC110526024
XM_021606601.2 mRNA downstream 132814 44873386 ~ 44891321 (+) False LOC110526024
XR_002473859.2 mRNA downstream 132814 44873386 ~ 44895982 (+) False LOC110526024
TU579244 other upstream 1071574 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 2159898 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 2160683 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 2598127 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 3258659 41469551 ~ 41471408 (+) True G507768
TU581131 other downstream 443867 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 477155 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 895017 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 1446428 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 1619384 46359956 ~ 46360585 (+) True G513501

Expression Profile


XR_005052115.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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XR_005052115.1 Expression in each Bioproject

Bar chart with 19 bars.
XR_005052115.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.