RNA id: XM_036980179.1


Basic Information

Item Value
RNA id XM_036980179.1
length 4439
RNA type mRNA
GC content 0.50
exon number 21
gene id taok3a
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44762891 ~ 44855594 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATAAATTGCACATAATATTATGTCAAATTGTGTCGAGTTAAATGTCAAATTTGACAAGAAGCGATCTGATCAGTGCACTTTATTGATCAATAATCAATGGACATTATCTACACAATTGTGGCACATATAGGGGAAGAAAGCCTGTCAAACTAGCTGTCAGTGACGAGGGGCTGTACTCGTGTGTTAGCAGAGGACTCTCGAGCCCTCATTCAGGAAGTCCTGACAACTCTTCAGAAAGTCAAGTCATCTCCTCCGGAGTTGGACTAAATGTTATTGGAGACGTGGGATTCATCACTGGTGGGTATGGTAAATGCCCGGCGCGTGGATGAGGAGCAGCAGCTGCAGTGAGGTGGAACATCGCGGGAACCGCGGTACCGTCTAGCCCCGCCCACCATGCCCTCGTCCACGCGGAAGGGAGCGCTGAAGGACCCCGAGCTGGCCGACCTCTTCTTCAAAGATGACCCCGAGGAAGTCTTCTGTGACCTGCACGAGATCGGCCATGGCAGCTTTGGGGCCGTCTACTTTgCCAGAAACTCCTACTCCAACGAGGTGGTGGCCATCAAGAAGATGTCCTACAATGGCAAACAGACCACTGAGaAATGGCAGGACATCATTAAGGAGGTCAAGTTTTTGGAACAGCTGCGCCATCCAAACACCATTGAGTACAAAGGCTGCTACTTGAAGGATAACACTGCCTGGCTGGTGATGGAGTACTGCCTAGGCTCCGCATCAGATTTACTAGAGGTTCATAAGAAACCGCTCCAAGAGGTTGAAATTGCTGCCATAACCCATGGTGCCTTGCTAGGACTGGCTTACCTCCATTCCCATAATATGATTCACAGagatgtGAAAGCTGGAAACATCCTGCTAACTGAGCCAGGCCTGGTCAAACTGGCAGACTTCGGCTCTGCCTCAATCGCCTCTCCTGCCAACTCCTTCGTAGGAACACCTTACTGgatGGCCCCGGAAGTGATCCTAGCAATGGACGAGGGCCAGTATGAGGGGAAGGTGGACATCTGGTCCCTGGGAATCACCTGTATTGAACTGGCGGAGCGCAAGCCTCCCCTGTTCAACATGAACGCTATGAGTGCCTTATATCACATCGCCCAGAACGACTCTCCCACGCTGCAGTCCAACGAGTGGTCGGACCCCTTCCGGAGCTTCGTTGACTACTGCCTACTCAAAATTCCTCAGGACAGACTCTCGTCGGGGGAGCTGCTGCGAcATGACTTCGTCCGTCGGGAGCGTCCCCCACGGGTCCTCACGGAGCTCATCCAGAGGACCAAGGATGCGGTGCGGGAGCTCGACAACCTGCAGTACCGCAAGATGAAGAAGATCCTCTACCAGGAGAAACACAACGGACCCATGGGGGAgagccaggaggaggaggaggaATCTGAGCAGGCCAGCTGTAAGATGAACAGCCTGGGCAGTAATCACTCCATCCCCAGCACCTCGGTCAGTACAGGTAGCCAGAGTAGCAGCATTAACAGCATGCAGGAGGTCCTAGACGAGAGCTGCTCCGACATGACCATGATGCACCATGACTACGACAGCACCCTCGAGTCCTCCGCACACACCAAGAAGGACCACGGGTATAACTGGGATGATGGTGTGAAACGTGACCACAGGCCCGAGCTGAGACCAGCCTCCTCAGACAAGAGCCAGGCACACAACTACCGCCACAACAACTTTTCTACCATCAAATCAGCATCGCTGGTGACCAAGCAGATCCATGAGCATGAGCAAGAGAATGAGCTGCGGGAGCAGATGTCGGGGTATAAACGTATGAGACGGCAGCACCAGAAGCAGCTGATAGCTCTGGAAAACAAGCTGAAGGCTGAGATGGATGAACACAGACTGAAGCTGCAGAAGGAGGTGGAGACCCAGGCCAACAATGCCTACATAGAGCTGGAGAAACTGGCTAAGAGACACACCGTCCACTGTGACAAAGAGATGAAGACGACGTCAGCAGACGAGAAGAAGTTCCAGCAGCAGATAGTGGCCCAGCAGAAGAAGGAACTCACCACCTTCCTAGATAACCAGAAGAAGCAGTACAAGCTCTGCAAGGAGAAGATTAAAGAGGAGATGAACGAAGACCACCACACCCCTAAGAAGGAGAAGCAGGAGCGTTTGTCGAAGCACAAGGAGAACTTGCAGCACAGCCAGGCTGAGGAGGAGGCCCATCTCCTCGGCCAACAGAGAGTCTTCTACGACAGGAACTGCAGAGGCTTCAAACGCAAAGTCATGATCAAGAGGCATGAGTTTGAACAGGAGCAGATACGAGAGGAGCTGAACAAGAAGAAGACCCAGAAGGAGATGGAGCATGCCATGCTGATCAGACACGATGAATCGACCCAGGAGCTGGAGCATCGTCAGCTGAAGACCCTTCAGAAGCTCCGCATGGACCTGATCCGCCTTcagcaccagacagaactggagAACCAGATAGAGTACAACAACCGCCGCGAGAGAGAGCTCCACCGCAAACACGTCCTGGAGCTACGGCAGCAGCCCAAGAACCTCAAGGCCATGGAGCTGCAGATTAAGAAGCAGTTCCAGGACACGTGTAAGGTCCAGACCAAGCAGTACAAGGCCCTGAGACACCACCAGATGGAGGTTACGCCCAAGAGCGAGCACAAGACGGTGCTCAAGGCCCTGAAGGAGGAGCAGACCAGGAAACTGGCCATCCTAGCTGAGCAGTACGAACAGAGCATCAACGAGATGATGGCATCGCAGGCGCTGCGTCTGGACGAGGCCCAGGAAGCCGAGTGCCAGGCTCTGAGGCAGCAGCTGCAGCAGGAGATGGAGCTGCTGAATGCCTACCAGAGTAAGATCAAGATGCAGACCGAGGCCCAGCACGACAGAGAGCAGCAGAAGCTGGAGCAGAAGGTTTCGCTGCGCAGAGCCCACCTCGAACAAAAGATTGAAGAGGAGCTGGCTTCCCTTCAGAAGGAGCGTACAGAGAGGATCAAGCACCTGCTGGATCGCCAGGAGAGAGAGATCGACACGTTCGACATGGAGAGCCTCCGACTGGGCTTTGGTAATCTGGGGGCCCTGGACCCCCCCAAGGATGACTACAGATGACTAGGTCAGCCCTGGTGACCTCGTCTTCGTCGTCTGGTGTGACGACCCTCCTGTTCCTCCTCAGCCTCGTGACCTGGTCTGGTTTTGGTTGGACCGGGCAGTTAGGGTCTTTAGCTACTGAttcccacacacacagctacacacataaatgtgtgtacacacacacacaccagccacatACAAACCAGCCCAGTGCCTGCGCTGGTCAATAGCCAACGGGCCCCCCTCTCTCGTGGTGTCCGTCACAAGATGACAAAAAAATGCTGGATAACTTCCGAGGTTGTCTTTGTTTTAAAGAATAACATTACATTGTCACGGTGTTCCTGTTTCTTGTGCAATGATGACACTTTTAGTGTAACTGAAAGTGGAAACcagagggagagaataagaggACAATAGGAGTGAATAGTATTGTGTTGCTCAATGATCATGCATTAGAGGTTAATAATTTGTTCAAGCTGTGCAAAAACCTAAAGccgaaaaactaaaaacaaactGGTCCTCCTTCTGCAGCCTTATTGTCTTCTTGTCCCTGCTTCCAGTTCCTTCAACTCTTTTTGCTTTTTATATTCATCAGGAAATTTTTATGGAAAATTTAAAGCAATTTGATAGGTTGAGAACATGTTTAAAGTCATAGTCTACGTAATGGTACAGTAAATAAATGTGAATCCTCCTTTGGAGAGAATTTGATTATTCACTTGACATGAGACACTGAAGAGGGAGACTTGCAATGCACCCTGATACCACTGTATCATACTGATTCTCTGCACTGGCAGGTAATGTGAATACCACATGGTTGAGTcatgacacactattccctatgtagtgcagtacttttgggGCTCTGGTTAGTGCACGATATAGGAtataaaatagtgcactatgtagggaatagggtgtcattccagacacagacacatgtgAATCCCTACTCCCAGGTAGCACAAAGGGCTTTGTCGGGGCTTGGGGAGGGACATGTATTTTGTGTATAGAAGGATTTTTTTTGGAGAGCTTTTACTTATTTTCGTATTGTACTATTTTAACTGTTACTCAAATcgatttaaaataataataatgacatttTTCTCCTTCCTCTTCGTTCAGTATTTGAAAGTTGAATCAATCGGGCAATGGGTTTCTTGCTCTGACATTTCCAACTGAAATGAATCCTTATTTTTGCTGTAACCTCCACACTCTACAAGCTGTGTATTTTCTTATAAACCAGATGAGTAAAATAAATGCTTTATTATTGCATGCACTTTAATTTAGTTTTTCAGGATTAAGAGAGAGCATGAGTCTGTCATCCAAGCTTTTAATTATATTTGTAAATAAAGTGCTCATCACACAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580939 lncRNA downstream 33408 44728893 ~ 44729483 (-) True G512009
TU580938 lncRNA downstream 34066 44727822 ~ 44728825 (-) True G512008
TU580896 lncRNA downstream 103404 44658893 ~ 44659487 (-) True G511967
TU580887 lncRNA downstream 119357 44643285 ~ 44643534 (-) True G511958
TU580886 lncRNA downstream 120292 44642399 ~ 44642599 (-) True G511957
TU581020 lncRNA upstream 21031 44876625 ~ 44878344 (-) True G512084
TU581570 lncRNA upstream 295690 45151284 ~ 45152892 (-) True G512599
TU581621 lncRNA upstream 361646 45217240 ~ 45217441 (-) True G512650
TU581626 lncRNA upstream 367283 45222877 ~ 45223103 (-) True G512655
TU581628 lncRNA upstream 369960 45225554 ~ 45226243 (-) True G512657
XM_021606599.2 mRNA downstream 6748 44749601 ~ 44756143 (-) True LOC110526021
XM_021606595.2 mRNA downstream 14281 44740939 ~ 44748610 (-) True wsb2
XM_021606597.2 mRNA downstream 44462 44717516 ~ 44718429 (-) True LOC110526019
XM_036981751.1 mRNA downstream 45802 44643847 ~ 44717089 (-) True LOC118965027
XM_036981750.1 mRNA downstream 170273 44536009 ~ 44592618 (-) True LOC110526017
XM_021606607.2 mRNA upstream 323646 45179240 ~ 45185652 (-) True LOC110526026
trnaw-cca mRNA upstream 372813 45228407 ~ 45228478 (-) True trnaw-cca
XM_036980188.1 mRNA upstream 396292 45251886 ~ 45254834 (-) True xbp1
XM_036980189.1 mRNA upstream 414974 45270568 ~ 45384849 (-) False znrf3
XM_036980190.1 mRNA upstream 414974 45270568 ~ 45384850 (-) False znrf3
TU580171 other downstream 551068 44209465 ~ 44211823 (-) False nf2a
TU580173 other downstream 552226 44209338 ~ 44210665 (-) False nf2a
TU580172 other downstream 552226 44209465 ~ 44210665 (-) True nf2a
TU579749 other downstream 814502 43946338 ~ 43948389 (-) True prodhb
TU579133 other downstream 1238783 43523714 ~ 43524108 (-) True G510310
TU581656 other upstream 419044 45274638 ~ 45276387 (-) True znrf3
TU583050 other upstream 1504294 46359888 ~ 46360886 (-) True apba1a
TU583053 other upstream 1515096 46370690 ~ 46430360 (-) True LOC110526044
TU583552 other upstream 2055064 46910658 ~ 46910950 (-) True G514434
TU583955 other upstream 2160568 47016162 ~ 47016496 (-) True G514777

Expression Profile