RNA id: XR_002473859.2


Basic Information

Item Value
RNA id XR_002473859.2
length 1433
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC110526024
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44873385 ~ 44895982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATATATTGGGGTCTTAACAGACGTAGGCGCTGTTTTGTTATGCACAGCAATTCAAATCGATTGTTTATCTAACGTTTGTTTACAATTTTACTAGCTAGCCATCATATGGCTTCCGCTTTACTATCACCGATGGTAGATTATTACAATGATGAAGAAGAACTTGATAGTGTGGACGAGGACGATGATCGAAGCTTCAGGGGAATAGACTCGGAAGAAGACACTGAAGACGCCAGTGAAACTGACCTAGCGAAACACAACGAGGATGACTATGTGGAAATTAAAGAACAGATGTACAAAGACAAGTTGGCATCATTGAAAAGGCAGTTGACGCAACTCCAAGAAGGAACACTTCAGGAGTACCAGAAGAGAATGAAGAAGCTGGACCAgcaatataaagagagacttcGCAATGCTGATCTCTTCCTCCAACTCGAGACGGAACAGGTGGAAAGGAACCACATCAAAGAGAAAAAAGCGGCGGTGAAGGAGTTTGACGATAAGAAGGTTGAGCTGAAGGAAAATTTAATTTCTgagctggaggagaagaagaagatgatCGAGAATGAGAAATTAACAATGGAGTTGACCGGCGATTCTATGGAGGTGAAACCCATCATGACCCGGAAGTTGAGGAGGAGGCCCAACGATCCAGTCCCCATTCCAGACAAACGAAGGAAACCTGCACCTGCTCAGTTAAACTATTTGCTAACAGACGAACAGATAATGGAAGATCTGCGAACACTGAACAAGCAGCTGAAGTCCCCCAAGCATCCAGTGTCTCCGTCTTCTCCAGACCATATGCCCACCACTCCAGTAGAGGCCCCTTCACAGCGCTATGAAGCCCGCATCGAAGAAGGAAAGCTCTACTATGACAAGAGAtgGTACCATAAGGGCCAAGCCATCTACCTGGAGTCAAAGGAGAATACCAAGATCAGCTGTGTCATCAGCTCTGTGGGAACAAACGAGATCTGGGTGAGGAAGACCAGTGACAGCACAAAGATGAGGATCTACCTGGGACAACTGCAGAGAGGAGCGTTTGTCATCCGACGGCGGTCGGCGGCATAGAACACATGCCCCTTCCTTCTGTTTCTCCATCCATCTCTATAGCATCTCCCTCATTTTATCTCTTTTTCCGGAATCATGCCATGTTTTCTAAGAGCGATGCTTGTCTGAACTGCACCATCAATACGTGGAGGAGGGGGAAATGGACACAACATTTTCATATTGTCTTTTCATCTGGTAAATTGTCTGTTTATAGTTTTTTTGCTCCTGTTATATTGACCTTTTTATtgcttataaaaaaatatataatatactgaATTGACTTAAGGTTTGAATTTGTATCTGTGATATTGACATTAGATGAGTCTAATTCACTCGTGGAATAGCTATCGGACTTGGCTGGGAAGATAAAACTTAATTTCTTTTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580547 lncRNA upstream 123338 44749641 ~ 44750048 (+) True G511647
TU580519 lncRNA upstream 132699 44730179 ~ 44740687 (+) True LOC110526020
TU580477 lncRNA upstream 217818 44655225 ~ 44655568 (+) True G511577
TU580473 lncRNA upstream 227938 44645224 ~ 44645448 (+) True G511573
TU580464 lncRNA upstream 249668 44623249 ~ 44623718 (+) True G511564
TU580696 lncRNA downstream 124265 45020247 ~ 45045920 (+) True G511781
TU581127 lncRNA downstream 161729 45057711 ~ 45058035 (+) True G512188
TU581221 lncRNA downstream 311277 45207259 ~ 45207720 (+) True G512277
TU581228 lncRNA downstream 316800 45212782 ~ 45213075 (+) True G512284
TU581211 lncRNA downstream 327844 45223826 ~ 45228334 (+) False LOC110526028
XR_005052115.1 mRNA upstream 132814 44730067 ~ 44740572 (+) False LOC110526020
XM_021606591.2 mRNA upstream 524599 44345482 ~ 44348787 (+) True LOC110526013
XR_002473857.2 mRNA upstream 533597 44337726 ~ 44339789 (+) False LOC110526014
XM_021606590.2 mRNA upstream 564026 44295614 ~ 44309360 (+) True LOC110526012
XM_036980166.1 mRNA upstream 578148 44284852 ~ 44295238 (+) True LOC110526009
XM_021606606.2 mRNA downstream 165676 45061658 ~ 45152985 (+) True LOC110526025
XM_036980186.1 mRNA downstream 259999 45155981 ~ 45178825 (+) False LOC110526027
XM_021606608.2 mRNA downstream 260000 45155982 ~ 45178825 (+) True LOC110526027
XM_021606612.2 mRNA downstream 291137 45187119 ~ 45236944 (+) False LOC110526028
XM_021606609.2 mRNA downstream 291271 45187253 ~ 45236944 (+) False LOC110526028
TU579244 other upstream 1214893 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 2303217 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 2304002 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 2741446 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 3401978 41469551 ~ 41471408 (+) True G507768
TU581131 other downstream 288457 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 321745 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 739607 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 1291018 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 1463974 46359956 ~ 46360585 (+) True G513501

Expression Profile