RNA id: XM_021606606.2


Basic Information

Item Value
RNA id XM_021606606.2
length 4152
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC110526025
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45061658 ~ 45152985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taCACAAGGTGTCCTACTCTCCTTGACCTATCCCAGCCTCCCAACACAACGTCACAGTCTGAGAGAGACAAAACAAGCAGCCGTCAGCTAGGCTCCTCAGTCGCTTTGAACACACACCGCTCGTACAgaacacacgcatacatacacactcacactcactcatgACCCTGCGCGCCCACAAACTCAAACATACACAGTCAGCGAAACACTCGCCTCAGCTCTCAGAACTCATCCACGTGCTGGTGTGTTGAGAAACACTCTGTCACACATTTCGTCCGTCACTGGCTCCTTGGCTCTGACCGGAGAGAATGCTTCTGCTGTATCGCATATGACTCCATGCCTGCTCTAACTGAAGAGTGCTACAGAACACAGAGCAGAGCGGAAGCAGCAGCTGTGACTGAGGAACAGTGGAGGAGAAATGCTAACCCCCCTCTGAGAGAACAAAAAGCAGCCTGACGTTGTGGCAGCAGCAGAAACAGCCTTTGTCTTGTCCTGCTTGGTTCACATGCTCCCCCCGTAGAAGAAATCagaagagaggagaccagaggagaggagccGCACTGAGCACTGACACACTGGCCTACTctaccagagagagaaagggttggCTGTTTGATGTGTGTTATCCTGTTGCTCTTCCCTGTGTGGATTCAGTACTTGGACAGCGCCAGAGCACTAGGTCCGCTCAGCAACACAGTGTGTATTTTTGCTGGTCGTGTGTTACAGTCTATGTGAAGTCTCACTCGTCGAGACTCCATCTCCAGGGAAGCCCTGGACCCCCATTCCCAGCCCTCCATGGCTCTCTCCCTGGCTCCCTGCAGCCCTCTCTCCCTGGGGACAGCAGACAGCATGGCCAGCCTGGAGCACCAGGGGGAGAAGCAGCTCTTTGAGAAGTTCTGGAAGGGGACGTTTAAAGCTGTGGCCACACCGAGACCAGAGAGCATCATCGTGGCAAGCATCACCGCCAGTAGGAAGGttatcagCACGGAGACAACAACCTGCCAGCCACTCAAAGCCgatgagagaaaaggggaggtCGCGGACACCAAGGTGGACACAACCACAGACAGAAATGGATGCATTAGAGACATAGGACGACACAAACATAGCAGTTATCATCGGACGCGGTGTGTGTCATTTGATGACGATCTCTCCCCTTGGCCCCACGCTCCCAAAGGGAAGAAAAAGAAAAGGAAAtcggagagaaagaggaagaggaaaagGTCCCCGTCCTACAGCCTGTCACCagtgaggaagaagaagaagaagaagaagaagaagaagaagagctcTAAGAAAAGCAAACGCCACAGGTATACCTCTAAAAAGACAAAGCACAGCTCTTCAAGCTTGAAACATAAGAGGAAGGGTGATCGAAAGCACAAAAAAAGCTCACGGAGTCACACGAAGCGGAGACGACGCTACCGGAGGTCAGAGTCAGAGAGTTCCACCTGGCGCTCCTCCAGCGCCGAGAGTGGCCATCATCTGCACAAATCAGTGAATCACCCTGTGTTGGGAGGCCTAGCAGCCCAGAGGGAGGACCCTAGTACAGCGCACCTGGACCACAGAGCGTTTGAGTGGGGGTCCGCCGCCAAGTCAGTCTGTAAAACGACTCCAATCTTTCGCTCCGTCCTTTCTACTGGCACCGACTTGCAGTCAAAACCTGGCAGTGAGGTTTTAAACACGACAGTAGTTCACCATCACACTCTGACCAATCAGAGCAAAGGACCACAGGATTACGATTCCGGGAATGACACGTCTTCACCACCGTCGACCAAAACCAGCATTTCACGGACAAACGTCATCGGTGACAAAAAGGTCTTGTGTCAAGCGCCGGCTTCCCCAGAGAAGCTGAAGTTTACAGATGGCGATAACGCATCCGACTCTGGGAACTCTGTGACCAGCTATGCTTCCCTGTGTAAACCTCTGCATGTGGAAGGTGGTTTGTCTACTCCCATTTTCAATGGGAACGGCAAGAGTGAGCCGGTAACAACCTCAGTATGTGGGGCCAAGGTGGGGAGACCTCAGAAGacagtctcttctctctctcctttgaggATGGGGGCCTCTTCACGTAAGCGGACTAGAACCAACTCGTCGAGCAGCAGAAGTAGATCCTCAGGGAGCTCAAGACACTCTGGACGCTACTCTCGAAGCCGATCACTGTCATCTGCCAGGTCGTACTCCCGTTCACCAAGCTACTTGGCTGGTTTGAGAAGGAAAGGTAGTGAGGGCAGTGGAAGGTCCAGAGGAAGCTACTCCAGATACAGTAAAGAGAGGATTCGAGAGAAGAAGAGGGACCCCAGCTCCGGTGAGAAGGATGTGAAGCACAGCAGTCAGAAGCGAAGCGGGAAGAGGCATAGACGCAGGTCCTACTCTCCAatgaggaaaaggaggagagattCACCCAGTCACCTGGAAGCCAGGAGGATAACTAGTGCCAGGAAGAGGCCCATCCCCTACTTCCGGCCCAGTCCTTCATCCAGCAGTCGCTCTACCAGTGTATCCTCTTGGAGCAGCCTCTTCACACGGAGTCACAGCCCTAGGTCCAGTCCTGGCCTCTGCCTCAGTAGTTCAAGGAGTAGGAGTAGGAGCAGGAGCCGAGGAAGAAGTAGGAGTAGGAGCTACTTCTCCTACCGGAGCTACAGTCGCAGCTCCTCTTGGAACTCCATCTTTGGTCGCCGGAACCGCAGTCAGAGCCGGAGTCGCAGCTATGACTCGTTGGACGGTTACAGCAAGGGCAAGAACCGGCACTGAGTTTTTTTTCAACAGCCTGAGGAGGTTACAGAGGAGCCTGCATCATCATTTCTCAATCTCCCAGCGGAAGTATGAGGTAATGTTTTCATCTCTTTGCGTCTTTTTTGTGTTAGATGCCTGAGCCAGACCCTTCAAGTaagtgtatttttttttgtgtcgTTATTTGTTCAACGATGTCTTGAATAGAGGCAGTTGTCTCGTCCATGATGTATTGAAGACAGAAACCACTGGAAATAGATTGTTTGTTTTCTTTGGTTGGTTTTTTTTTTCAGTCCGCTGTGTCCTCGTCATGCATTAGCATTCAAAATGGCCAGAGACTGTTTTTCCTTGAGACACTCTTCCTCGGACGTCTGTGTCCGAAACGAAGGATGGAGGAGCATTGTTCAATTTAACCCTCTGATAAACTCTTATTTTATAACAACTCTTAAGTTTCTGACCATTTCAGATCTGGGATGTGCACTACAAAGTTGCtttggggacagagggagggtgagagggagggtttTTCAGGAACATAGGAAAAGGTGTCCATCTCTGATCTCAGCTCTTAATGATGTGGAGCAAAAACATGCCTCCGAGAAATGAtgagaagggggaggaagaggaggaggcggAAGTCCCGATGCCAAACAAACTGCCTATCAGCTCAGATTTATTTATCCTCTAATCAAGTGGAAAACAATTGAAATTTAATTCCTTATAAGATGAATGATCAAACCACTGCACAGAAGGGCTGAAAAAGTGGGTTTTCATAAAAATGTCTGTCTTCATAACAGCTCCTCaaaagagattttttttttacactgtttTAGTAGCTGCTAGGTTGTCATATTTATTTATCTAGGTAGTTATTTATTAattcatatatttatttatttatgcaaATGATCTGTgttctatttattttattattttgaaTGAAACTTGAATAAGAGTGCAATGAGAGAGTGTTCAATGGTTTTTCTTCTCAGCATATGTTTGACAGAGAGGAGATTCACTATTGGATAAATCTGTTATTTTGTTATTCAGATTTTTTGTGTAACGGTCCCAAATAGCGCTGTTCAATAATGTGTTTGGTATTTCAGAAGCAGAATCAAACACACACTTCACCTCTCTTGTTTGCATAGTCCGCCCACCAAAGGTCAAGTTTTGAAACACACATTTTTGTGTCATGCATATTTATAACGTGTTTACAGTAATGTTCATGCTTTTGTGTTGCCTCTCAGCAATGGTCTATGTTTCTATGCAATGCCACcactaggcagggtagcctagtggttagagcgttggagtagtaaccgaaaggttgcaagttcgaatccccgagctgacaaggtacaaatctgttgttctgctcctgaacaggcagttaacccactgttcctaggctgtcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU581127 lncRNA upstream 3623 45057711 ~ 45058035 (+) True G512188
TU580696 lncRNA upstream 15738 45020247 ~ 45045920 (+) True G511781
TU580547 lncRNA upstream 311610 44749641 ~ 44750048 (+) True G511647
TU580519 lncRNA upstream 320971 44730179 ~ 44740687 (+) True LOC110526020
TU580477 lncRNA upstream 406090 44655225 ~ 44655568 (+) True G511577
TU581221 lncRNA downstream 54274 45207259 ~ 45207720 (+) True G512277
TU581228 lncRNA downstream 59797 45212782 ~ 45213075 (+) True G512284
TU581211 lncRNA downstream 70841 45223826 ~ 45228334 (+) False LOC110526028
TU581239 lncRNA downstream 76925 45229910 ~ 45230320 (+) True G512295
TU581241 lncRNA downstream 80069 45233054 ~ 45233283 (+) True G512297
XR_002473859.2 mRNA upstream 165676 44873386 ~ 44895982 (+) False LOC110526024
XM_021606601.2 mRNA upstream 170337 44873386 ~ 44891321 (+) False LOC110526024
XM_036980184.1 mRNA upstream 170337 44877512 ~ 44891321 (+) False LOC110526024
XM_036980185.1 mRNA upstream 170337 44878719 ~ 44891321 (+) False LOC110526024
XM_036980183.1 mRNA upstream 170337 44878890 ~ 44891321 (+) False LOC110526024
XM_036980186.1 mRNA downstream 2996 45155981 ~ 45178825 (+) False LOC110526027
XM_021606608.2 mRNA downstream 2997 45155982 ~ 45178825 (+) True LOC110526027
XM_021606612.2 mRNA downstream 34134 45187119 ~ 45236944 (+) False LOC110526028
XM_021606609.2 mRNA downstream 34268 45187253 ~ 45236944 (+) False LOC110526028
XM_021606610.2 mRNA downstream 34272 45187257 ~ 45236944 (+) False LOC110526028
TU579244 other upstream 1403165 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 2491489 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 2492274 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 2929718 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 3590250 41469551 ~ 41471408 (+) True G507768
TU581131 other downstream 31454 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 64742 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 482604 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 1034015 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 1206971 46359956 ~ 46360585 (+) True G513501

Expression Profile