RNA id: XM_036980186.1


Basic Information

Item Value
RNA id XM_036980186.1
length 2002
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110526027
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45155981 ~ 45178825 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCAATCGGTATAATGTCTCATAGAGGGTATTAAACTTCTAGGATACTAACTGGAGGGGTCGTTATAAATCAATGTCCTTGGGTTGAAACCGTTATTTTTGATGATCCAATCAGTAACTGTCATGAGCCCAACACGGGAAATTATCAAATTAACAACTTTTTCTCTCACATAGACTACTCAATATTTATAAAAGGTGTCAGCTTGGGGAGAGTAAACTTGGAAAGGGTAAACATTTTTTCTTACTTTTTTTCTTTGGGACAACGACCGGTAAACATGGCAGAAGGAGACTTCTACACTCTTGGAAGTAGGCAGAGGGTCCCCCGAGATCCGTTCAGAGAGAGTCCGTCAATCGCCTCCCGATTTATGGACGATGACTTTGGGATGTCCCCTTTCCCCGAAGACTTGTCAATGGACTGGCCCGGCTGGGCTCGGCCTAGCCGGCTCAGCACGCGGCTTTCCGCACCGTTTACAGGCACTCTGCGCACTGGGTTTCAGCCAACGCGCGCATCGACTGGGCAGACGCCGGTGTATTGCACGAGATACAGCGAGTCCCCCCGCAGCTCTCCGACCCAAACACCGGGAGAGCCCTGGAAAGTGTGTGTGAACGTCCACAGCTTTAACCCAGAGGAACTTAATGTCAAAACCAAAGATGGGTTTGTAGAAGTGTCAGGAAAACATGAAGAGAAGCAAGAGGAAGGAGGTATAGTGACAAAGAATTTCACAAAGAAGATACACATAGGAACACTTGGCAGCTCATATGGAAACTCCAGCGACGGACAGAGAGCCTTAAATGGCCAAGCTGCTTCACAAAGTCCAGAGACCAGTCTGTCTGgggaTTCCAATCGACGTGGACCCTCTGACGGTCTTTGCCTCCTTGTCGCCAGAGGGTGTGTTGATCATCGAGGCACGGCAGAGCCCTCCCTACTACCTCTTCAGTAACGAAGGTCctcagggagagaggcaggaggccACCATGGTCTAGGGTGAAGTCCAGGACCGAGCTCTCTCGCCTGGGGAGACACAGGCTCACCCCGGGCCCCCTCGGGACATAATAGAGCATCCAGCAGACTAGAGAAAGGGCTAACACAGGTTCAAAGCCATCGAGACCTTCTGCGTTATGTTGTTGGGGTgggtccgaaatggcaccctattcactattaaGTAGTGCACTGAATATGGTCCCAAAGAAGCACTCTGATTTTCGTTTTGAGTGTTAAGTAATCACTCAATCACTCCcctaaaatatataataataacatGGTGTTTGTGTATCTCTTGGCAGCGAAGGCTATTTGGATCTGTCACAGATTTAATTAAAAGTCCCAAACTAAATCAATCCTAATGTCTCACAGTGGAGTTGCTATGTACAGTATGCATCCAGTCCCAGATGCAACACTGAACCGACTCCAGATCCTAAACTGAGCAGCCTAGAAGCCAGCTGGGGCCCATTCTGCCTGGTTCATCCTGTGATGTCTTGGTTTTCTATCCGTATCCCATTTGTCATGAAAACGTCACTTGACAGAATGCTTCATATTATGTTAAATGTGTAATTGAAAGAAGCACATTCAAATGGATCATCAAATAAAGTCATCCCATATGGCTTCATTTCTGAGTGGGAAGACTTAATGAAAGGGATATTCCCATCATTATAGTGTGTAACCTACTGTACGTGTGTGTTGAAACCGTATTCTACCCTAATGCAGGCCTACTGTCTGTAAATACATTGCACTTAACAGTACGTGCCAACCCATAGACACATATATTTGAGAGCCATGATTACCCTACCTAGAGGTCTTACAAACGGATGTTCGCTGCATTTTTCTATTTGTGCATGTAATGATGACGCTGTGCTCGTTCTTGGTGCAAAGGGAATGCATTTTTTGCTagacatctcctctccctcccccctctccttcctctgccctccctcatctccttctctcctcctttccctcatGTCTTTGTATTTGTTTATGCAATAAAACCTCCCATCAATCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU581127 lncRNA upstream 97946 45057711 ~ 45058035 (+) True G512188
TU580696 lncRNA upstream 110061 45020247 ~ 45045920 (+) True G511781
TU580547 lncRNA upstream 405933 44749641 ~ 44750048 (+) True G511647
TU580519 lncRNA upstream 415294 44730179 ~ 44740687 (+) True LOC110526020
TU580477 lncRNA upstream 500413 44655225 ~ 44655568 (+) True G511577
TU581221 lncRNA downstream 28434 45207259 ~ 45207720 (+) True G512277
TU581228 lncRNA downstream 33957 45212782 ~ 45213075 (+) True G512284
TU581211 lncRNA downstream 45001 45223826 ~ 45228334 (+) False LOC110526028
TU581239 lncRNA downstream 51085 45229910 ~ 45230320 (+) True G512295
TU581241 lncRNA downstream 54229 45233054 ~ 45233283 (+) True G512297
XM_021606606.2 mRNA upstream 2996 45061658 ~ 45152985 (+) True LOC110526025
XR_002473859.2 mRNA upstream 259999 44873386 ~ 44895982 (+) False LOC110526024
XM_021606601.2 mRNA upstream 264660 44873386 ~ 44891321 (+) False LOC110526024
XM_036980184.1 mRNA upstream 264660 44877512 ~ 44891321 (+) False LOC110526024
XM_036980185.1 mRNA upstream 264660 44878719 ~ 44891321 (+) False LOC110526024
XM_021606612.2 mRNA downstream 8294 45187119 ~ 45236944 (+) False LOC110526028
XM_021606609.2 mRNA downstream 8428 45187253 ~ 45236944 (+) False LOC110526028
XM_021606610.2 mRNA downstream 8432 45187257 ~ 45236944 (+) False LOC110526028
XM_021606623.2 mRNA downstream 468909 45647734 ~ 45654067 (+) False si:dkey-174n20.1
XM_036980192.1 mRNA downstream 469616 45648441 ~ 45654067 (+) False si:dkey-174n20.1
TU579244 other upstream 1497488 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 2585812 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 2586597 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 3024041 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 3684573 41469551 ~ 41471408 (+) True G507768
TU581131 other downstream 5614 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 38902 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 456764 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 1008175 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 1181131 46359956 ~ 46360585 (+) True G513501

Expression Profile