RNA id: XM_021606609.2


Basic Information

Item Value
RNA id XM_021606609.2
length 2479
RNA type mRNA
GC content 0.54
exon number 13
gene id LOC110526028
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45187119 ~ 45236944 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGGGAGACAGGGTCCTACAACATAAATGCGTGTGGTTCAATGTAGACGCCGGTGCCAAAGTCTAACAGCCCGTTCTGcggtttcttatttttatttaaaaaaataatcgtggcaatttcaataaaaaaaacattgagtGCTACGATATATTTTAAAAACGTGGCCTACACAACGTTTTGTCTAGAGCTGGGGCTGTTATTACAATGACGACTCATCGAAATGCAGCACTAGACCCGCGTCACTTCGTAATAATCAAACCGCTTCCGATTCTTAAACCGTCAGGAGAAATGCGCCAGGCCCGGAGCAGAACGGTGTGGTCCGCCTGTCAGCCGACCAGGGAGCAGGTGTTCTGGGATAACTATCACCGACGACAGTGGCAGCTGAGCCGGCAGGGCTATAGAGCAGCCCCCTGGAGACCCTATGAGGAGGTCGGACAACCGCTGTACCTTGAAACCAAGAGACTCATACTAGAATCACTGGGACAACCTGTGGAAGAGGCTTCAAAGGCTGATCCCTTACCAGAAGAGGATGTGCCTGTTTGCACCACTCCATCAGATTCCCCAGGAGcaaacaagAGCTTGCCATTTCGTTGCCCCCaggcagggaagagagaggatgCAGTATCTCTTAGGAAGCATCTGGGACATACCAGCCGTTTGGTGTCAGCGGTCAGACAGGGCCGGGGTTACTTCCACCTCCTccagaagaaggagaaggaacaggaggaggcgcagcagagggagcagaagaggaaagaagagtggcagcgTGTCCAGCCCCGACCTCCCTGCTCAGAGTCTGACTCTGACAGCGACCCAGGGAGGAAGAAGGCCCAGTCAGCTCGACCTTTCACCCCCATCCACTGCTCCCTGACTTCCCCTCAGGCCTCTGAGCCACCACAAGGGCCCATATTCCGCCAGCTGTGCTGTCTGAACTGGTTGCTGGAGGCCCTGACTCTGGACAGGACCGGGAGAGCTGGACCAGTCACGTCCTGCTGGGATCTCAAGGACCCTGGCCAAGGAAAAACCACCCTAAAGACCCTGAATAAAGAGAGAGCCATAGAGACCAAATGGGACCAGTTTGTGTCTCTGCAAAAGCCACGTAGAACAGGCTCCAGGCCCTCCCGCTCCTCCTCTGGTCGTCTGTACCTGTTGAAGGGGTCCTCCCTGAGCGTAGCCTCCTCCTCAGCCCTCACCACCCCTACCCTTCTGGGCAGCCTGTCCTCCCTGGGCCCTGGGATAGAAGACACTGGAGCTACATTAACTGGAGCTATAGTGACTGCCACTGGAGCCAGCCAGGATAGTGCGGAGCAACCAGGAGCAGGAGGGGACTCCGAGACAGAGCTGCCCATGTCAGAGTACCTTCAGAAGCTGCTGGATGAAGTCCACCAGAGTGTCACCAAAGACTTCGGTGATCCAGAGCAGATTCATGGCGACGGCACTTTGACTGTCGGATACCGGCCACCTACCCAACCCACCCCTCAGAGAGAGGACAACACAACACGCCCCAAGACCAAAGACACACCAAGACCCAAAAGttGTCCTGCCAAGCCTCTGTCAGCCACCAGTGAGTTGATCAGCAGTAAGAGGTCCATGCTGTGGGATATGAGGACAGCCtatgaggagagagcagaggagctgGCCCAGATCTTCAGTGACAGTCTGGACCACAATGCCAGGAAGAGGCTTGAGAGTGGCATCCAGAGGTTCCAAGCCCTGTGTCATGTGACCCACTCTCACCTCATCCCTCGTCATGTGACCCCACGGGTCACCGGCATGAAACCCCCAGAGACAGactgcagcaacaacaacatgtgGCTGTCCTCTCTACTGAGCAATCTCCCTCCAGAGGTGTCTCAGGACAGAGGGGTGAGCCGAGTTCTGGAGAAACTCAGCCGCTTCGCAGATGAGCGGACCCCCAAGGTGCGACCCCATGTCTTCCTGAAGATGTTGGGGGGTCTACAGCCCTGGGAGCTCTGCCTACCTGACCTCTGTGTTGCCATTGAGCCAGGGAGCATGTTGTCCAGATGTCCAGAGAGGACTATGACTCGTGGCTCCTCTCCAGGGTCACTCTTCcacagcagcaggaccactaacCCAAAAATGTGACGACCAAAAAATACACGCGCACGCAAATATGCTCACACATTTAaatacacacccacagacaccacacacaccacccgtTCTGCCATTCAccttctgttaaaggtccccaaagcacacacatccctgggtcgctcctcttttcagttcgctgcagctagcgactggaacgagctgcaaaaatcACTCTAACTGGACTGTTTTATTTCTTAATTCGAAGACTCAATGATGGACACTCGTATTGAcggttgtggctgcttcgcgtgaattattgttgtctctaccgtcttgccctttgtgctgttgtctatgCCCAatcatgtttgtaccatgttttgtgctgctaccatgttgtgctgctcccATGTTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU581127 lncRNA upstream 129218 45057711 ~ 45058035 (+) True G512188
TU580696 lncRNA upstream 141333 45020247 ~ 45045920 (+) True G511781
TU580547 lncRNA upstream 437205 44749641 ~ 44750048 (+) True G511647
TU580519 lncRNA upstream 446566 44730179 ~ 44740687 (+) True LOC110526020
TU580477 lncRNA upstream 531685 44655225 ~ 44655568 (+) True G511577
TU581207 lncRNA downstream 259 45237203 ~ 45237802 (+) True G512263
TU581250 lncRNA downstream 6486 45243430 ~ 45243648 (+) True G512306
TU581252 lncRNA downstream 10421 45247365 ~ 45248229 (+) True G512308
TU581254 lncRNA downstream 13048 45249992 ~ 45250211 (+) True G512310
TU581258 lncRNA downstream 14945 45251889 ~ 45254762 (+) False G512311
XM_036980186.1 mRNA upstream 8428 45155981 ~ 45178825 (+) False LOC110526027
XM_021606608.2 mRNA upstream 8428 45155982 ~ 45178825 (+) True LOC110526027
XM_021606606.2 mRNA upstream 34268 45061658 ~ 45152985 (+) True LOC110526025
XM_021606602.2 mRNA upstream 295932 44879802 ~ 44891321 (+) False LOC110526024
XM_021606623.2 mRNA downstream 410790 45647734 ~ 45654067 (+) False si:dkey-174n20.1
XM_036980192.1 mRNA downstream 411497 45648441 ~ 45654067 (+) False si:dkey-174n20.1
XM_021606621.2 mRNA downstream 411695 45648639 ~ 45654067 (+) False si:dkey-174n20.1
XM_021606622.2 mRNA downstream 412204 45649148 ~ 45654067 (+) True si:dkey-174n20.1
XM_021606627.2 mRNA downstream 576454 45813398 ~ 45837739 (+) True LOC110526036
TU581131 other upstream 1384 45184439 ~ 45185869 (+) True G512192
TU579244 other upstream 1528760 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 2617084 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 2617869 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 3055313 42129225 ~ 42131940 (+) True G508559
TU581924 other downstream 398645 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 950056 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 1123012 46359956 ~ 46360585 (+) True G513501
TU582823 other downstream 1663617 46900561 ~ 46901123 (+) True G513745
TU583592 other downstream 1689898 46926842 ~ 46927714 (+) True G514464

Expression Profile