RNA id: XM_036980192.1


Basic Information

Item Value
RNA id XM_036980192.1
length 1562
RNA type mRNA
GC content 0.47
exon number 4
gene id si:dkey-174n20.1
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45647734 ~ 45654067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAAGACGACCGTTTCCAAATAATCTGTGGGACAACAACAATATTTGAATCCCCAAATCGTCTGTTTGACAGCGCGCCGCAAAGAAAAATGCCGATCACGCCCCATTGATCTTTGTCTGCAACCCACAGGAATCCAGCCCTGTCTAGTGGCAATGCTGGCATCGGCAAAGAGACGGCGGTTGCCTTGGCGATGCGAGGTGCCCGTGTCATCATAGCTTGCCGTGACGTGGACAAGGCTGAAAAGGCGGTGAGGGAGATCAAGATCAGGGGTCACAACGTTAACGTCCATCACATGGAGTTGGATTTGGCCAACATGCGCTCCATACAAGACTTCTGTAAGACCTTccttcagagagagaagaggttggACATCCTCATCAACAacgcagCCATGCCCAGCGTGCTGGACTGGACGGAGGACAACTTCAGCATGTGTTTCGGTGTGAACCACCTCGGCCACTTCCTGTTGACCAACCTACTGTTGGGCCGCCTGAAGGATTCGGCCCCCAGCCGCGTGGTCACGCTCACCTGCTCCAACTACAAGTACCAGAAGTTAGACTTCCAGGACCTCAACTATAACCTGCTGCCCTTCTTCACCTACTGCCGTAGCAAGCTGGCCAACATCTACTTCAGCCAGGAGCTGGGTAGAATGATGGAGGGCAAAGGAGTGACGACATACGCTGTGCACCCTGGCTATGTTCAGAGCAGTTGGACAGGTCACTACTCCATCCTGTTCCGTATGCTGGTGCAGGTGATCATGTTCATGTTTTTCGTGCCGTGTGAGATGGGCGCTCAGACCGTGGTCTACTGCGCCGTGTCGGACGAGGCTGCCAAGCACAGTGGGGGATACTTCACCGACTGCCAGCCCGCCACGCTGAGACCTTTCGCCAGAGACGCCGGTGTGGCCAAAAAACTGTGGGAGGCCAGCGAGAGGCTGGTCAAACTGGCCTGAGAAAGGATGAAGGCTTCGTAAGGCTTGTAGATGTTTTTAGCCTGGAATACTCACTGAATATCACTCTGTTTTACTATAGTTTTTTAAAAACACAAACAATGGTTAAGGGGTATGATATTCAGTTTTGGATTTCCAGTCCAGGAGTGTTTTTCCAGGTTTGTTGAAATATTAATGACTcaaataacaaaaatacattTCCTCACACTGTTGGCTTGCGATGTTTCACTGTCATGATGAATAAAAGTTACTGactgttaatgtgttaatgtgttaatgtgtcaAAGCATTAAGAAGGTCAGTAGACCAACATGTTAACGATCAAATTATACTATGACGCTTTGCAAGAGAGAAATGTGTGGGGAAATGATTTGGGTCAAACTAGCCTGAAATTacttttattgtttttgttattgttttttctAACCATTGAATTGTCTTCAGGGGACCTTATTGTGAAATATgtctgtgtttattttttatgaatggGGAAAGcattgtttaacatttttatggtTAGCCTTTTTATTGCTGTCCTGAAACACTTGAATGGTGATGTGAAACATGGCTGCTTTTTCTTCTGTTGCAATAAAATCTGTGGCAATAAAATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU581928 lncRNA upstream 5084 45642804 ~ 45643357 (+) True G512916
TU581926 lncRNA upstream 8993 45637367 ~ 45639448 (+) True G512914
TU581925 lncRNA upstream 11357 45636848 ~ 45637084 (+) True G512913
TU581923 lncRNA upstream 14102 45634086 ~ 45634339 (+) True G512911
TU581922 lncRNA upstream 14707 45633260 ~ 45633734 (+) True G512910
TU582002 lncRNA downstream 90882 45744949 ~ 45745157 (+) True G512988
TU582041 lncRNA downstream 136599 45790666 ~ 45793785 (+) True G513021
TU582044 lncRNA downstream 143434 45797501 ~ 45797808 (+) True G513024
TU582050 lncRNA downstream 153948 45808015 ~ 45808239 (+) True G513030
TU582053 lncRNA downstream 197166 45851233 ~ 45863183 (+) True G513033
XM_021606612.2 mRNA upstream 411497 45187119 ~ 45236944 (+) False LOC110526028
XM_021606609.2 mRNA upstream 411497 45187253 ~ 45236944 (+) False LOC110526028
XM_021606610.2 mRNA upstream 411497 45187257 ~ 45236944 (+) False LOC110526028
XM_036980186.1 mRNA upstream 469616 45155981 ~ 45178825 (+) False LOC110526027
XM_021606627.2 mRNA downstream 159331 45813398 ~ 45837739 (+) True LOC110526036
LOC110526902 mRNA downstream 218752 45872819 ~ 45873709 (+) True LOC110526902
XR_005052121.1 mRNA downstream 245852 45899919 ~ 45901120 (+) True LOC118964875
XR_002473699.2 mRNA downstream 304363 45958430 ~ 45959299 (+) True LOC110525032
XR_005052124.1 mRNA downstream 314397 45968464 ~ 45972013 (+) True LOC110526904
TU581924 other upstream 12191 45635589 ~ 45636250 (+) True G512912
TU581209 other upstream 427659 45217727 ~ 45220782 (+) False LOC110526028
TU581131 other upstream 462572 45184439 ~ 45185869 (+) True G512192
TU579244 other upstream 1989948 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 3078272 42567248 ~ 42570169 (+) True G509160
TU582342 other downstream 532933 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 705889 46359956 ~ 46360585 (+) True G513501
TU582823 other downstream 1246494 46900561 ~ 46901123 (+) True G513745
TU583592 other downstream 1272775 46926842 ~ 46927714 (+) True G514464
TU583628 other downstream 1368227 47022294 ~ 47023092 (+) True G514499

Expression Profile