RNA id: XM_021606627.2


Basic Information

Item Value
RNA id XM_021606627.2
length 2773
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110526036
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45813398 ~ 45837739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctgtcagtcgcTCTGACACTCAACGGAATCACACTCAACaccacactctcactcactcactcactctttttgacacagaggcagagacacacacacatatcctcaGTGTAACGCGGGGCAAGCACACCACAAACAGCAAAGAGGAAAGAGGAAGAAAaggaaggagggaaagaaaggaggagaaagggaaaaCATTGAGTTATCTAACACTTAGATTTTCTCAGAGGCTTTGAAAGGAGATCAGACACAGAGGAGTTGAGAGAAGAGGAAAACAGGAGGAAGACAGCGGAAACCCTAGACACAGGTTCAGTGTCACAGTGACTTAGGCTCTTCACTGAAGACCCCTGGATCCTGAACCCATTTCACCTAGGATCCcctacccccaccctcctcctcgCCCCAGCCCCACAGCCTGTGGGTATCTtcctgtacctgtgtgtgtgtacctccccctcctcaccctcccacCTCCAGAGCCCATAGTCCACCATGCTGTGGACTGTTCTCCTAGCCCTGCTGGTTCTCCTCCTGCTGCAGACCCAGCTATGTGTCTGTCTACGGGTGCTCAGAGTTGCCGGCTATTCTTCCccctcatcctccccctctcgTAATGCCACCAAGCAGCGACTACCTGGAGCCATCATCATCGGCGTGCGTAAAGGTGGCACCAGGGCCCTTCTGGAGATGCTCAACCTCCATCCGGACGTAGAGGTGGCCAAGGCTGAGGTGCACTACTTCAATGTGGAAGAGCACTACCGGCGTGGGCTGGCGTGGTATCGTGCCCAGATGCCCTTCACCCTGCCTGGGCAAGTGACGGTGGAGAAAACCCCTGGCTACTTTTCCTCTCCCCAGGTCCCTCAGCGGGTCTGGGAGATGAACCCTGCTGTCCGACTCCTGCTGATCGTCCGGGACCCCGCTGAGCGCCTCGTCTCCGACTACACCCAGGTTCTCCATAATAGGGTGACCCGCCACAAGCCCTACAAGTCTCTAGAAGAGCTGCTGCTCCGCCAGGGCCACATTGACCCGGCCTACAAAGCCCTGCAGAGGAGTCTGTACCACCAACACCTGGACCGCTGGCTGGAAGTCTTCCCCAGGGAGCAGGTCCATGTGGTGGACGGAGAGGCCCTCATCAGAGACCCCTTCCCAGAGCTCCGGAGGGCGGAGAGGTTCCTGGACCTGCTGCCCCGCATCACTCCCTCCAACTTCTACTTCAACACAACTAAAGgtttctactgtctcctctctgctgggGGCCATGACAAGTGTCTGGATGAGTCCAAGGGGAGGCCCCACGCTCCTCTCAGCTCCCGGGCCTTCAGGAAGCTCTGCCGATACTTCAAAGAACCCAACCGCCTGTTCTTTGAAATGGTGGGACGTTCCTTCTCCTGGTGCTGACTGTGCATCAAGAAACAAAAGGCCCTTTATTGCTCTGATACCACCTTtaatgggacagagagaggggacagacaggGCCAACTGGAGATATTGGCCATAATAGCAAATATTTGGGATGCCTTTGAAATGGTCACCTGTTCCctatgtgcactacttttgggcaGAGAGGGTACCATTTAGAACGTAATCTTAGAGACTCTTAGAGACACTAAGAGCAGGTCAACAGTGAAAAGACATTGGCCTGTGTGAAGTTCCTGTTGATTGATTGCACAGATAGATAGATTGGTGTGTTGACTGTCAGGTAGGGGGGTGGATGGGATGAATGGATGAATAGATTGCTGTGCAGACTGTTGGTTGTGCGGATGGATTCATTTATGTGTCAATTGAAGGTTGTGGGTGGATGAATTGACTGAGAGATGAAAGGATAAAACCACAGATGCACACAGACGATTTTAAAGATCTTTAGAGGTGTTACGTTTTTAATGTTCTCAATTGTCTTACTGTCAATGAGCTGAACCAAGCCAGGCCTGGGAGTGAAAAGCACAACAAGCATAGACTGTATAAGATAACTCTCACTGAGGGACACTATTTCTAACTACCCATAGAAAAAGATGGTGGGTACATTCAATATGGCAGCTGGTCCACCCATCACggaacattgacttgaatgggaatatccATTCTAgtgatctgttttttttaaatcgtaCTACCTGCTGGAGAACATGAACTGAAGTGCCcattctctaatactgtatgccTGGTGGTCCTAATAGCACCTGATCATGACTCTTGCTGGTGTCTATCAATGTTGGCCTTGGTTGCACAAACTGGAATGAAATCGAGTGtaagaaaataattacaataaacTGTGCCATACAATTGTATCGTGAACAATCACGACAAAAACAAATCTTGTCATTTTGATGGTCATTAAAATGAGTTTCAGAGCAGATACCATTGGAGGAAATGTAGAAGTGTACAAAAAATAGAGGGTAGAAGAATGCTTTGAAATTAGATGGGGCTTATTGTTGCACTATAACTGAATGCTTAATTGCATAAAAGGTTAGTCCATCTGAAGATCTACTGTACCCATATGAAGCTATTTCAAACCGAGTCTGAAGATTGAGACTGCTTACCATTTTCACAAAATCGTTTACCATTGTAAAAAGTATAACTGTGAGCTAAAATAATGTCCTCATTTAGATAATCATGTGTACTTATTCTAGTTATTATTCTAATATTTTACTATCAAATGTTCAATATATTTTTGGGATTGTTGAATTTAGATTTTAAGGTGTTTGAGCTGTAATGCATTGTAAGTATGTTTTCTAAAATCTTCTTcaataaatgtgtactgttgtaCTTTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582050 lncRNA upstream 5159 45808015 ~ 45808239 (+) True G513030
TU582044 lncRNA upstream 15590 45797501 ~ 45797808 (+) True G513024
TU582041 lncRNA upstream 19613 45790666 ~ 45793785 (+) True G513021
TU582002 lncRNA upstream 68241 45744949 ~ 45745157 (+) True G512988
TU581928 lncRNA upstream 170041 45642804 ~ 45643357 (+) True G512916
TU582053 lncRNA downstream 13494 45851233 ~ 45863183 (+) True G513033
TU582064 lncRNA downstream 66354 45904093 ~ 45906563 (+) True G513043
TU582416 lncRNA downstream 295459 46133198 ~ 46141623 (+) True G513363
TU582349 lncRNA downstream 338086 46175825 ~ 46176150 (+) False LOC110526042
TU582433 lncRNA downstream 355689 46193428 ~ 46193656 (+) True G513377
XM_021606623.2 mRNA upstream 159331 45647734 ~ 45654067 (+) False si:dkey-174n20.1
XM_036980192.1 mRNA upstream 159331 45648441 ~ 45654067 (+) False si:dkey-174n20.1
XM_021606621.2 mRNA upstream 159331 45648639 ~ 45654067 (+) False si:dkey-174n20.1
XM_021606622.2 mRNA upstream 159331 45649148 ~ 45654067 (+) True si:dkey-174n20.1
XM_021606612.2 mRNA upstream 576454 45187119 ~ 45236944 (+) False LOC110526028
LOC110526902 mRNA downstream 35080 45872819 ~ 45873709 (+) True LOC110526902
XR_005052121.1 mRNA downstream 62180 45899919 ~ 45901120 (+) True LOC118964875
XR_002473699.2 mRNA downstream 120691 45958430 ~ 45959299 (+) True LOC110525032
XR_005052124.1 mRNA downstream 130725 45968464 ~ 45972013 (+) True LOC110526904
XM_036980247.1 mRNA downstream 238345 46076084 ~ 46190292 (+) False LOC110526042
TU581924 other upstream 177148 45635589 ~ 45636250 (+) True G512912
TU581209 other upstream 592616 45217727 ~ 45220782 (+) False LOC110526028
TU581131 other upstream 627529 45184439 ~ 45185869 (+) True G512192
TU579244 other upstream 2154905 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 3243229 42567248 ~ 42570169 (+) True G509160
TU582342 other downstream 349261 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 522217 46359956 ~ 46360585 (+) True G513501
TU582823 other downstream 1062822 46900561 ~ 46901123 (+) True G513745
TU583592 other downstream 1089103 46926842 ~ 46927714 (+) True G514464
TU583628 other downstream 1184555 47022294 ~ 47023092 (+) True G514499

Expression Profile