RNA id: XR_005052124.1


Basic Information

Item Value
RNA id XR_005052124.1
length 2720
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110526904
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45968464 ~ 45972013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtttgTCATTTTAGGCTAAAACAAATTAAGGGGCTAATCCTTATTAACTAACTAACAACGTTACTTGCCACTCGTAGCTGCCAAATAGATGTCCGAAAACAAAATGGTTAGTCCGTATGCCTTTGGAAATGTGAAATTtgacacaacatatctacaggaAAGTAACAATTTTTCAAAATGCGTGTCAGGAGATGCAGGTTCAGTCTGGCACATGCCTACATGATTTAATAACATATTGTTTTCATTCTCATCTTCAGCACCTGGGTAACTCTCGCTGTCTCAGAACCCAGTCCGCACCAAATGACACATCTAAGACTGTGGTTGTCCCGTTGACTGCCCTATGTTCATCAGAGTGGCTTGATACCAGACATGGAAGAGAACAGCGGAGTCCTACATCTCACATCACCCATACATGCAGAGGGAAACGCTGTTCAGATAAGTGAGATCAGTGGAGGCAGCCTATGAGAAGCTGGCAGATGAGGCTCTGTATGCGTTGGCTGACTACTTTGAGGATCTGATGGATGGACCACTAGCAGGGCCTGAGTTTGATGTTCTCTTCTCTggtcgttacagctgtaattcagacaaaGACATGTTCCCATCATCACAAGTATATAAACTCCACGGTagacacccctccttctctccaatacTTACATCCTATGATTCGACAGGAAGAGGGTAACAGGATAATAAACCATTATTTCTCCATTCAGGGagaaacctgaacctgaaccagatctgacctgacctcctgacctcaacccctccttcgcATAATCCACAGATGTCCTCTCGTATCACCTATCACACTCCCATGACTCCCTCTCgtccacccagcacattccgCAGCCACTCTGTCTTACTACAGAGAACCATTAACTTCTCACTCCTTTATATACAATGCGTCTGATTTATCAtgtctttaatatctcaatgttcaaagtttaccCCGAATCCAACACATGAAACGCTGTCTTCTCTGTAAGTAGGCTACTGATTGTATTCTGATTGTAAGTCAATCTGGATAAGTGTCTATTAAATTATGGAAATGGCCAGAGTATGAAAGTACAGGGACTTCTCTATAAGTACAGGGAGATACTGTACATACCAATTGCACTCCTTTTGGGAAATTCTTATCTTTATCTATCCTTCTTTTGTCCACTAGGGGTAGCTGTTTAATTACATATAATTCTGTTGGAAGTTTGTCAGTCCTTATTTGCATCAAAACACTTTCTTTATGTTAGTTTCCCAGAgcacaaatgtaaaaaatattctTGCCATTTTTTTATATTGGTGAGAAGTAACGATGTTGCAAATATAGTACTCTTTTCTGTTATTTTTTCATCCTTTCTTGTCACCCTTCATCAGAGCAGTTCTTCATCAGAGCAGACTACTTGTGAATGTTGATTGGTAGCCTATGTGCCTATTAGGGATCCGTGAGTCATTAGAGCTGTAGGATTGTGCTGTTGCTGTAATGTGCAGGGCCAATTACTTCCAGAGTGCAAAGGTCACAGGAGGAAATAATGATTGTAGTGTCTTCTAATCACTGACGCACAGGGCACTAAACACCACTTCAATACACTgatggcactgtgtgtgtgtgtccatgagaTTAAATTGGTCTAACATGACGCTAAAAAGTGTTTCATGGTAATAATGACCTGACCTCTTGACCTGGGTCAGTGCTGTATTGAACAGCCAGAGGATCTATTGATGCCCAGAGAGCTGACTGACTAACCCACCCACTACTGCTTGTGctgatgatggtgtgtgtgtgggaatgtACCCCTGTGAGATATTTTTTTGTGGAACAACTGTCAGAAGGTCACTTCTGGTGACTTTTTAAAAGGACATTCTACTCCaaaattaatttaaaaataaTTATGTTGACACCATCTGAAATATAATTTTCATTTTAAAAGTATTAGAACCTGTAGcccaactgatgcagcatagCGGCTTTAAATTAATAGGCTGAAGCATCGGGTTGCCCATCTGCATTAACCTCATTGGAAAACTCCAAATGACTATGAATGGATCGAATTCTACAAATAGACATAATTTGACACTCCAGAGGGGTATAATACAAAGCAGGTCAACAAGTTAGTCAGGTAACTTTgataaacaaccagaaataaTTATTGATTTTCTGGTTCATTAAAAAAGCTGAACTTAGATATGCGTCTTTGGTTATTGAGTCAATTAGACCCTGCCTATTTCATGTTGGCTGGTAAGTCATTGAtcttgctttgtagtatacccctctgtttttttctggatcaaatgggGCTTGGTGGTGGGCGTGGTCTCCGACAGAATATTGCTGTTTGTTTTAAAGCCACTTTTTCTAGTAGgtctgaccccatttagtcaGTTGAGATTGTTTTAATCAAGCTGTGACAAATACACTATATAAAAAATTGTTATGCCACACGTCTGTCTGGACTAAGCCATTGCGGAGGCCACAGGGATGGCACACCAGTGTCACATTTATCCtaccatttttatttaaccaggtaagttgactgagaacaccttCTCATTTACAgaaacaacctggggaatagttacaggagagagggaatgaatgagccaattgtaagctggggatgattaggtgccCATGATGGCATGAAGGCCAgaatgggaatttagccaggacacaaggattaacacccctactcttacaataagtgccatgggatctttagtgacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582064 lncRNA upstream 61901 45904093 ~ 45906563 (+) True G513043
TU582053 lncRNA upstream 105281 45851233 ~ 45863183 (+) True G513033
TU582050 lncRNA upstream 160225 45808015 ~ 45808239 (+) True G513030
TU582044 lncRNA upstream 170656 45797501 ~ 45797808 (+) True G513024
TU582041 lncRNA upstream 174679 45790666 ~ 45793785 (+) True G513021
TU582416 lncRNA downstream 161185 46133198 ~ 46141623 (+) True G513363
TU582349 lncRNA downstream 203812 46175825 ~ 46176150 (+) False LOC110526042
TU582433 lncRNA downstream 221415 46193428 ~ 46193656 (+) True G513377
TU582435 lncRNA downstream 223225 46195238 ~ 46195439 (+) True G513379
TU582436 lncRNA downstream 223763 46195776 ~ 46196008 (+) True G513380
XR_002473699.2 mRNA upstream 9165 45958430 ~ 45959299 (+) True LOC110525032
XR_005052121.1 mRNA upstream 67344 45899919 ~ 45901120 (+) True LOC118964875
LOC110526902 mRNA upstream 94755 45872819 ~ 45873709 (+) True LOC110526902
XM_021606627.2 mRNA upstream 130725 45813398 ~ 45837739 (+) True LOC110526036
XM_021606621.2 mRNA upstream 314397 45648639 ~ 45654067 (+) False si:dkey-174n20.1
XM_036980247.1 mRNA downstream 104071 46076084 ~ 46190292 (+) False LOC110526042
XM_036980248.1 mRNA downstream 128964 46100977 ~ 46190292 (+) False LOC110526042
XM_036980249.1 mRNA downstream 227506 46199519 ~ 46263098 (+) True LOC110526905
XM_036980252.1 mRNA downstream 473943 46445956 ~ 46461957 (+) True ascc2
XM_021606645.2 mRNA downstream 499471 46471484 ~ 46514756 (+) False LOC110526048
TU581924 other upstream 332214 45635589 ~ 45636250 (+) True G512912
TU581209 other upstream 747682 45217727 ~ 45220782 (+) False LOC110526028
TU581131 other upstream 782595 45184439 ~ 45185869 (+) True G512192
TU579244 other upstream 2309971 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 3398295 42567248 ~ 42570169 (+) True G509160
TU582342 other downstream 214987 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 387943 46359956 ~ 46360585 (+) True G513501
TU582823 other downstream 928548 46900561 ~ 46901123 (+) True G513745
TU583592 other downstream 954829 46926842 ~ 46927714 (+) True G514464
TU583628 other downstream 1050281 47022294 ~ 47023092 (+) True G514499

Expression Profile