RNA id: XM_036980247.1


Basic Information

Item Value
RNA id XM_036980247.1
length 6336
RNA type mRNA
GC content 0.52
exon number 23
gene id LOC110526042
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46076084 ~ 46190292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGACGGATAGAATACACCCCAGTTGTTGGTAAGAACGTTTCGGTTCCCATCGATATCACAGCAATAATTTTAAAGGATCTCGGGAGTTGACGCCGGAGGAATTGCAACGAGCTAGGGAAGTCTTTTAGGACCGCAGTCACAAGCCATGTTCCATTTTAGAGACTAGGATAGGGTATATTTTAAGAGATACCAGTTCTACAAGCCATAATTAAGACACTTGTTTTACGGTTTAACATAAGGCCACAGTGTTTCACAACTTTTACAACGCAGAATGCCTGTGAAAGGAGGCGGAAGAGTGGCTGTGTATCCAGGCAAGGGCGAACATTTCGGAAGCTCAGGAATGGAGGAGACTGTTTGGGAGCAGTACACTGTGAACCTACAGAGGGACTCCAAGATGGGGTTTGGTATCGCTGTGTCGGGGGGGCGGGACAACCCCAACGTGGAGAATGGCGAGATGTCAATCATCGTGTCAGATGTCTTGCAGGGAGGACCAGCTGATGGACTACTGTTTGAAAATGACCGTGTGATCCAAGTCAACTCCATCCTCATGGACAACGTGCCTCATTCCTTCGCTGTGCAGCAGCTACGCAAATGTGGGAAGACCGCCAAGATAacgGTGAAGAGACCTCGGAAGGTGGCTCTCCACTCCCTGAAACACCCTCCCTCCCCTGGTGCCGAGAGTCGAGACTTCGGCTCCACCCGCTACTACGATGCCGATGACAACCAGAGCGACGGTGGCTGGCATCGTGGCAATGGTGGTCCTGGTTACAACCGCGAGCCTCGCGACCTCACCCCCGACAACAAGAGCTACCTGGACCCCAACTACGGCAGCCGTGGTAACCGGGGGAGAAGCCGGGGGAGGAGCAAAGAGAGGGCGTCGCCAAGCCCAGAGCCTCACCACGACAACAGCAGTGGGCGGGCCTTGGACCGGGAGCCGCCCAGTCCAGAGAGGCCACAGTATTCACGGGAACGCAGCCGGGGGAGGAGCATGGACCGGGAGAgacgagggggaggaggaagtCCAGGTGGGAGGAGCTACAGCCGGGGAGACAGCTATGAGCGAGGAGGGGGGAGGTACGGGGATGGGGGAGGTACCGGGGGGAGGATGGTGAAGAGTAAAAGTAGAGACAACCTCCGTGAGCCGCCCCGTTCGCCCTCTCCTGACCTCCCCCGAGGAGGAGCTGGAGACCTGGAACCCCTGGAGAAACCTGTTAACGTCCTGCTGGTCAAGAACAGACCCAACGAAGAGTATGGTCTGCGTCTGGGCAGTCAGATATTCATCAAGGAGATGACCAGTACAGGACTGGCTGCCAAGGACggaaacctacaggagggagATATTATCCTCAAGATCAATGGGACAGTAACAGAGAACCTGTCTCTGAACGATGCAGGGAAGCTCATAGAGAAGTCTAGAGGAAAACTCCAACTGGTCGTCCAGAGAGACCGCCGCCAGATCCTCATCCGTATCCCTCCCCTCGTAGACTCCGACTCCGAACCTGATGatatctcaGAGATGGAGTCCTACTCCCCACAGGAGGACCGTAGATCTCGCCAGTCGGACCTATCTTCCCACTCCTCCAACGAGAGAGAGAACcccagACCTCTAACTAGCCTGGAAGACTCTCCCAGGGTAGCCAAGATGTCTGCCATGGCCTCGCCCTTTAGGGTGCCCCCCCTACAGGACCCAAACGCCCCGGGCCCTGTCATACTGACCTCAGAGGGGCTGCCACGCCTCGACGAGCAACCAGCGTCAGCAAAGATTACTCCTAAGATTCTGCTACGCCCCAGCCCAGAGGATGAAGAGCTCTATGGCGCTAACACAGTGATGGTGAGTTTCCAGAAGGGGGACAGTGTGGGCCTGAGGCTGGCGGGGGGTAACGATGTGGGCATCTTCATCGCTGGCATCCAGGAGGGTAGTCCTGCCGAGGAGGAGGGGCTACGCACAGGAGACCAAATCATGAAGgtgaatAGCGTTGACTTCCGAGGCATCGTGAGAGAAGAGGCTGTTCTGTTCCTGTTGGAGATTCCTAAAGGAGAGGACGTCACCATACTGGCCCAGAGTAAACCTGATGtctaCAATGACATCCTGGTATCTGGTCGTGGGGACTCGTTCTTTATCAGGACTCATTTTGAGTATGAGCGGGAGGCTCCCCAGAGCCTGGCCTTCTCCAGAGGGGAGATCTTCAAAGTGGTGGACACTCTCTACGATGGCAAGCTGGGCAACTGGCTGGCCATCCGCACTGGCAAGGACAAACAGCTGCTGGAGAAAGGCATCATCCCCAATAAGAGCAGgGCTGATCAGATGGCGAGCGTACAGAACTCCCATAAGGCTGCTGGCACGGACCGCGCCGACTTCTGGCGTCTGAGAGGTCAAAGGGCAGCCAAGAGGAAGGAGCTGaggaagagcagagaggatgtcAGCGCTACGCCCATCGCCACACGCTTCCCTGCGTACGAGAGAGTCGTGCTCAGAGAGGCTGGTTTCAGACGTCCTGTGGTTCTGTTTGGTCCTATAGCTGATGCAGCCAATGACAAGCTAGCCAACGAGCTGCCTGACCTGTTTGTCATCGCCAAAACGGAGCCTAAAGATGCCGGGTCGGAGAAGTCCTCAGGAGTGGTGAGACTTAACACCATCCGCCAGATCATCGAGCAGgaCAAGCATGCCCTGCTGGATGTGACTCCCAAGGCGGTGGACACTCTGAACTACACCCAGTGGTACCCCATCGTCATCTTCTTCAACCCAGACAGTAAACCAGGGGTTAAGGCCATGAGGCAGAGGGTGATACCTGGTTCCAACCGCAGCGCTAGGAAACTATATGAACAGGCTGTCAAACTGAGGAAGACCTGTTCTCACCTATTCACTGCTACTATTGATGTGAACTCGGCCAACGATGCGTGGTATGGCAGTGTGAAGGACTCTATCAGGGAGCAGCAGACTCAGGCTGTATGGGTGTCTGAGGGGAAGCTGGACTGGACGGAGATGGACCTTGATCTCCATGACGACCGCATGTCATACCTGTCAGCCATGTCAGCCGACTACCTGAGCATGGACAGCCGATTGGCCAGCGACTACGATGACACGGCGGATGAGGGTGGGGCTTACACGGATAACGAGCTGGACAACGAGCCGGCTGACCAACTGCACGTGTCCGCTATCAGCCGCTCCTCTGAGCCCGTGCTGGCAGAGGAGATCCTGCGCAGGTGTAGTCCAGAGATCCGTGGTCGTGTCAGGAGGGTGGGCAGCAGGGAGGTGCTCAGCAGCGCCAGCCCACCCCCCGCGTTTGTACCTGACCCCCCCAagGTAAAGCTGCTGTTCAGGGATGAGGTAGTCCCTCCCATAGGGTCATACGAGCCCCCCCCCAGCCGAGGCTACGACTCCCACTCCTCCAGCCCTGCCAgcgacccccctcctctccctcgcaCCCTTAACTCATTTGGCAAGGCCAAGCCACTGGCACCTCCCCCCATCGCTGTCAAACCTTCCTATAATACCCAGGACACCACCCGCAGCACGGCCCCAAACACAGCGGCCTTTAGGGGCCCGGAGGAGCCAGGGGACAGCCCTGAGGACCCCAGCCTCAAGTCGTTCCTGGGGAAGATCAAGGCCTTTGAGAAGATGGACCACTTTGCACGCACTCAGAGGATGCTGGAACTGCAGGAGGCCCAGAACgccaggTTGGAGATAGCTCAGAAGCACCCAGACATCTATGCTGTCCCTGTGAAGACCCAGAAACTGGATCACAGCCGGCCTCAGCCTATAGGttccAGCTCGCGTCCTGAGCCCCAGACCCCTCCCTCCAAGCTGCCATACTCTGAGAGTTGTGGGTTCTACCCCagcgaagaggaagaggaagagtacCGACGCCAGCTGGCAGACCACACCAAGAGAGGCTACTACCAGACCAACAACCAGAAATACCAGGACACAGAACTTTAGACTATGCTACCAACAGCCATAAAATACCAGGACACTGAATGAAGTGTAGCACTACTACGTGCCCACCTACCTACCCTACCACACCCACCTACCTACCCTACCACACTAAACTGTAGTGCCCCTTCTCTCCTGGACCCCCGACTACCCTTAACACCCTAAAGTAACAAGACACAGGGCTGGTTGACAGAGACACCCACACACTGCTGAGCCTTGCTCTGATTGACTCAGTTCAGCGCACACAAACGCACACTCTCAATTCCACTGGGACTCTGCCCCCCTCCCTTGACCCTGCACCAATACGCTGCTGACTCGGAAGCTGGCCAGTTTTAAGTTTTTCTTAAAACCGCTTTTTTGCTTCAAAAAGTGGATAGTTACCTCACTGTCTTTGTTATTATTCTTGTTTAATTTCTATTTGCTTGTTTGGTTGAGTTAGTTTTTGTTACACCGATCTGTGTTATTGTTACACCAATCTGTGTTATTGTTACATCGATCTGTGTTATTGTTACACCGATCTGTGTTATTGTTACATCGATCTGTGTTATTGTTACACCGATCTGTGTTACTGTTACACCGATCTGTGTTACTGTTATACCGATCTGTGTTACTGTTATACCGATCTGTGTTACTGTTATACCGATCTGTGTTACTGTTACACCGATCTGTGTTACTGTTACACCGATCTGTGTTATTGTTACACCGATCTGTGTTATTGTTACACCGATATGTGTTATTGTTATACCGATCTGTGTTATTGTTACACCGATCTGTGTTACTGTTACACCGATCTGTGTTATTGTTATGATCCATTTAATCAGGATGTTATTTCTTGCCTATGCAACTCCTTCAGTTTGCTGCCTGCAGAGCAACTGAAACCTATTACCACGAGTCCCTCTCTGCACTCCACAAGAACCTTAAACCTTACGAGTCCTCCAAGCTGTATCTTCTTCTCGTTACTCCTTTCCTTTTGTACTATATCCAACATTATAACCAGCTGTCTCCAAACTATTTTAAAAGGTcacatatatattattatatatacaaTGTCTGGTGTTTATACTCCTCCATCTTTGCATTCCTTCCTAtatgatcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacatactatatatatatatgagagagatcgagagagcgAACGAAAGAggcaatatattatatatacaataCACTGGAATGTAAGATTTTTTTAAGTGCCTTTTACTTTATGAATAACATAATGAGGTTTGGGGACATCTGACCATGCATGGCACCCCTGTCCCCTGGACCACACCACTCTGCTGCTCTCAAGCTTTTAGGGAAAACAGGGAACAAGAGACACCAAAACCTTAATACTGTCCCCACTGTACCGTCCCTCCATCCGTCCCTTTGTCCTCCACAACGATAATATCCGTGACCAGTCCTGTCCCCCAGAGACATGTTCAACATGGGAACAGCATTTAATCAAAAccgcctcctgagtggcgcagcggtctaaggtactgcatcgcagtgctagaggcgtcactacagacccgggttcgattccaggctgtgtcgcagcctgCCGCGACTGGGAAACCCATGAGACGGCGCacattggcctagtgtcgtccgggttaggggagggtttggctggccgggatgtccttgtcccatcttgctctagcgactcctggtggcgggccgggcgcatgcatgctCACTTCGGGTCGCCAGTTtgtacggctggcttccgggttaagcgaggagtgtgtcaagaagcagtgcggttcgGAGgtcgcatggctctcgaccttctcaacctctgtacgggagttgcagcaatgggacaagactgtaactactaattgGACATCACGAAATTGGGGGGGAATGTTTTCCGAGTTTCCTGGGTATGATAAAATGTATGAGAATAAATTCAATGTGCGGAAACAAAAAGAAACTGATCAGTAATATAACTCAAACATGATCTTTCAAAAGAGGAAGGTCATTTTTGTTTTATTAACCACGGAAACCTGGATAACGGTTTTGATTGAATAGCAACCCAGATCAGGTGGTTTCAGAGAGGAGGTTTGATGTAGGAGACGTGTGATTGGTTGATATGTATGTCAGTCATTTCTGTTGTGGAGTCTGTCATGTCGGCTGTCGTCGTCTCTGTTACACTGTTGATGTGTTTCTACATGTTATTACATGCTTGATTGTATCTCAGTTCACACTATACCTCCAGTGGGTTATAAGTGCTTATGATTGAACACACAGtattaaagagagagaaacagagagagagagaaacagatagagagaggaatgACTGGACAATGTCTGCTTTGGGTCTTTCATGTAGTTTTATCTTACAACACCAAATAAAAGAAAGTCTTTCATTGACCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582064 lncRNA upstream 169521 45904093 ~ 45906563 (+) True G513043
TU582053 lncRNA upstream 212901 45851233 ~ 45863183 (+) True G513033
TU582050 lncRNA upstream 267845 45808015 ~ 45808239 (+) True G513030
TU582044 lncRNA upstream 278276 45797501 ~ 45797808 (+) True G513024
TU582041 lncRNA upstream 282299 45790666 ~ 45793785 (+) True G513021
TU582433 lncRNA downstream 3136 46193428 ~ 46193656 (+) True G513377
TU582435 lncRNA downstream 4946 46195238 ~ 46195439 (+) True G513379
TU582436 lncRNA downstream 5484 46195776 ~ 46196008 (+) True G513380
TU582485 lncRNA downstream 72830 46263122 ~ 46267533 (+) True G513427
TU582565 lncRNA downstream 177360 46367652 ~ 46367855 (+) True G513502
XR_005052124.1 mRNA upstream 104071 45968464 ~ 45972013 (+) True LOC110526904
XR_002473699.2 mRNA upstream 116785 45958430 ~ 45959299 (+) True LOC110525032
XR_005052121.1 mRNA upstream 174964 45899919 ~ 45901120 (+) True LOC118964875
LOC110526902 mRNA upstream 202375 45872819 ~ 45873709 (+) True LOC110526902
XM_021606627.2 mRNA upstream 238345 45813398 ~ 45837739 (+) True LOC110526036
XM_036980249.1 mRNA downstream 9227 46199519 ~ 46263098 (+) True LOC110526905
XM_036980252.1 mRNA downstream 255664 46445956 ~ 46461957 (+) True ascc2
XM_021606645.2 mRNA downstream 281192 46471484 ~ 46514756 (+) False LOC110526048
XM_021606646.2 mRNA downstream 281192 46471484 ~ 46514756 (+) False LOC110526048
XM_021606647.2 mRNA downstream 281192 46471484 ~ 46514756 (+) False LOC110526048
TU581924 other upstream 439834 45635589 ~ 45636250 (+) True G512912
TU581209 other upstream 855302 45217727 ~ 45220782 (+) False LOC110526028
TU581131 other upstream 890215 45184439 ~ 45185869 (+) True G512192
TU579244 other upstream 2417591 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 3505915 42567248 ~ 42570169 (+) True G509160
TU582564 other downstream 169664 46359956 ~ 46360585 (+) True G513501
TU582823 other downstream 710269 46900561 ~ 46901123 (+) True G513745
TU583592 other downstream 736550 46926842 ~ 46927714 (+) True G514464
TU583628 other downstream 832002 47022294 ~ 47023092 (+) True G514499
TU583803 other downstream 1112891 47303183 ~ 47329244 (+) True G514662

Expression Profile