RNA id: XM_036980252.1


Basic Information

Item Value
RNA id XM_036980252.1
length 3518
RNA type mRNA
GC content 0.51
exon number 19
gene id ascc2
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46445956 ~ 46461957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCACCCAAACGGACATTGAGCTGCGCGTGCGCAATGTGCAATGTAAAGGTGCTTGGGCACTTCCGGCTCGCCTCATTCGCGAAACAGAACAGTGGCTAGGTTCGTAATGGCTTGAAAGAGCCAAACATTATATAAAACAAGAGTAAGTTCTCTATTAGAAGAATCAACTTGAAAGAGTGAAGAGAAACGATGGCGTGTGCAATGATACCTCTTGATGAGCAACAGGTGACAGAGGCTGCTGGGCCTCTGGGAAAGGAGCGCACCCTGCCAGCCCTGCATCCAGACAGGAAGGAGGAGCGGTGTTTTGTGACTTATAAGCCCCCTCCCGAGGACAGCTCCCCTGCTCAGGTGGAGGAGTACCTGGAGCATGGCAAGTTCATCACTGAGGACCTGGACTGGCTGCTGGCCCTGCGACATGACAAGTTCTGGTGCCAGGTGGTATTTGATGAGTCATTGCAGAAGTGTTTGGATTCCTACCTACGCCACTCCCCTCGGGGGTTAGACCCCTCCTCCTTGCCCTCCTCCCCGGCCGTTGCTGACATGCAGCGCTGCATCCACCGAGCCGTCTTTATGACCTTCCTCAGAATGGCCACGCACAAGGAGTCCAAGgaGAGCTTTATAACTCCGACTGTGTTCGGAGAGATCATTTACAACAACTTCCTGTTCGACATTCCCAAGATCCTGGACCTGTGTGTTCTGTTTGGGAAAGGAAACGCCCAGCTGCTCCATAAGATGATAGAAAACATCTTCACCCAGCAGCCGTGTTACTATGGAGACCTGGATGAGGCTGTTCTCTCAGTCCTACAGGTGTTAGACACTATCCTTGCTAAGTGTGGTCTCCAGTGTGAAGGAGCCACTGCCATCGAGCCTCTGAAGCTCAGCTCATCCGGCCGACCCACCGCCATGACCATGAGTCAACAGGACCTAGTGGATTTGGTGCTGTATCTGTGTGACACCTGTACCACCATCCAGGCCTTCCTGGACATCTTCCCTGCTGCCTGCTCCACCTTTCACTGTCACAGCTTCCTCAACAGACTAGCCTCATTCTACGAGGTGGCTGTGCCTGACATAGAGAAGGCTGTGAGGAAAAGAAACTTTGACGACGACAGTCTCCAGGAGGACCTGTGGAGGAGGGTGTGTCACGCCCGGAGGAGGATGGTGGAGATGGCACACCTGCTGCTACTACACACCTGCCTACAGCCCATACTAGAGGGCTCGGAGAACATTCAGACATTTGTGGAGGAACTCCTGCAGCATTTCACTACTTTCCTACCAGAGAAGAGGTTCCTATTAGACTACGATGAGCAGTTCCCCATAGCTGATGATATCAGTCTTCTTCAGCAGGCCTTTCCTCTCCTagaTGAGACTAGGACATCATATCTGCTCCAGGGGGTGGAGGATGCCTGGGACAGCATCGGCCGGAGGAGAACCCAGGACAGACCCCAGCAGACACACTCCTCTGCCGGGCTGACTGGCCAGGGAGTAGAGGTTGGGGCAGGGGCctgggggggagagatggggatcaGAGAGccaggggaaggaggggagaccCCCAGAGGAGCAGAGGCCATGCGGGATACACCCCATAAAGGAGACAACGGTGCTGCGTGTATGATCAGTGCGGGGGAGCTGGAGTCTCTGTTAACCCACATCAGAGACCTGCTACCAGACCTGGGAGAGGGATTTCTACTGGCCTGTCTCCACCAGTACAACTATAGCTCTGAATTGGTCATTAACTACATCCTAGAGGACAGACTACACCCTGACCTGGACAAACTGGATAGAGCCATGCCCAGGCCGGTAAAGGAGGAGCTTCCTCCTGTACTCAGCACCAGGTCCAACGTGTTTGACGATGATGAGTTTGATGTCTTCAACAGAGACCAGGTGGACATGACTCGCGTCTGGAAGGGCCGGAGGAAAGGAGAAAGTGTGCGGGACCTGCTTAATGACAAGCAGCACATAGCAGAGCAGAAGGAACGCTACCTGACCTATGAGACTGTGGTGGATGAGGTCATCGTGATTCCCAGTGAATCAGGAGCCATCGACAATCTGAACGATTATGATGATGAGTATGATGACACATATGACATCAACCAAGTAGGAGCCAATGATCTGGACGGAGACTCCAACCTGCTCAACCGCAGGCCGTTCACCATCCCTCAGGTCCTACGGCAGGGAGGCAGACCACAGATGCAGGAGGAGAacatagaggaggaagaggacgagaAGGAAGACGCTGTGAAGAGAGACCAGTTTGTTCAGGACCCAGCTCTgctgagagagagggcagaggccAGGAGAGCTACCATGCAACACAGGAAGGGgtACCGTCCGGagcctgccagagagagagacgtggtggGTAAACCTAAAGGCCAGGGCCAGTCAACAGAGACCCTTCTGGACCGACGCAAGAAGGAGGCCCACAAGAGCAGGGGAGCCAACCACAACCGCAGGGCTATGTCCGACCGCAAGAGGAACAAGGGAATGATCCCCTCCTGATAGGTGTTGCCATGGAGACCAACCAACTGACCTAGCGGACGGTGCGTACAAGACAGGACGACgtggaaaggaaggagagagaaagataatctGGGCTCAAAGGTCATGAGCCCTGATTGATGTCCCCATCCCAGAGTCCTCTTCATCAGTCAGATTCTTTCTACCGGGATTCACCGACCAGGCCATTTTTATAGGCCTTTTTCTGTTCTCTTTTAGCAAAGACATTCTAGTTTTCCATTTTCTATCGCAAAGGGACACCAATGATTAGTTTCATAACAGAACTTTGGTTGCCAAGTGGCCTGTTGGTGGAATGTTTAGAGACACATTTGAATGGTTTAATTTTCAGTTGTTTAGTCCAATATTGTAGATTGATTCAGTTAAACCAAAGTGCTGACTGAATGACAAGAGATTTATTTTTGCCATGTAACAAATCCATTTATTAAGATTTGGAGTGATGGAATCATTAGCTTTTACATGGTCATCAAATGAACAAGGAACATATGAGTAAAATGAGAGCGAGGAGACTCCAATAGGACGAGAGAACCAGCGCGACCGGCCTGACTGTCAGACTGAAACCACTGTCTGCTGGATCTAGAAGAACAATGAATGTCAGTTAAATACAGGACTAGACATCAAAATGACAGGCAGGCCAGGACCAGGGGTGGCAGCGTGTGTGTGCAATGTCTGAACGAAGTGAGAGTGTCTGTGGTAGTTAATATCTCCTCACCCAGCCAATCCCCCCACCCACCATGGTTCAGCCTCAACCCAAAAAGTGAGCTGCTATAACAacagtcgtgtgtgtgtttggaagtGCAGCATAAGAGGCCAAATGTCCCTCAGACAGACATCGAACAGCTTCTAGAGGCTTCTGACTCGACATGCACAACTACTTTATAACAAGAGAATCCTATAGAAAGATCTATAAGAGCATttttgtacaaaaaaaaaaatacaatttgctTTTTGAAGTTCtctttaaaaacaaacaaaataataaatacatttaatactGTG

Function

GO: NA

KEGG:

id description
K18667 ASCC2; activating signal cointegrator complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582565 lncRNA upstream 78101 46367652 ~ 46367855 (+) True G513502
TU582485 lncRNA upstream 178423 46263122 ~ 46267533 (+) True G513427
TU582436 lncRNA upstream 249948 46195776 ~ 46196008 (+) True G513380
TU582435 lncRNA upstream 250517 46195238 ~ 46195439 (+) True G513379
TU582433 lncRNA upstream 252300 46193428 ~ 46193656 (+) True G513377
TU582587 lncRNA downstream 29447 46491404 ~ 46507535 (+) False G513523
TU582588 lncRNA downstream 41331 46503288 ~ 46516159 (+) True G513523
TU582694 lncRNA downstream 185011 46646968 ~ 46697374 (+) True G513619
TU582824 lncRNA downstream 439593 46901550 ~ 46903598 (+) True G513746
TU582826 lncRNA downstream 443732 46905689 ~ 46905904 (+) True G513748
XM_036980249.1 mRNA upstream 182858 46199519 ~ 46263098 (+) True LOC110526905
XM_036980247.1 mRNA upstream 255664 46076084 ~ 46190292 (+) False LOC110526042
XM_036980248.1 mRNA upstream 255664 46100977 ~ 46190292 (+) False LOC110526042
XR_005052124.1 mRNA upstream 473943 45968464 ~ 45972013 (+) True LOC110526904
XR_002473699.2 mRNA upstream 486657 45958430 ~ 45959299 (+) True LOC110525032
XM_021606645.2 mRNA downstream 9527 46471484 ~ 46514756 (+) False LOC110526048
XM_021606646.2 mRNA downstream 9527 46471484 ~ 46514756 (+) False LOC110526048
XM_021606647.2 mRNA downstream 9527 46471484 ~ 46514756 (+) False LOC110526048
XM_036980255.1 mRNA downstream 9527 46471484 ~ 46514756 (+) True LOC110526048
XM_021606649.2 mRNA downstream 80647 46542604 ~ 46567635 (+) True LOC110526049
TU582564 other upstream 85371 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 255664 46187000 ~ 46190292 (+) True LOC110526042
TU581924 other upstream 809706 45635589 ~ 45636250 (+) True G512912
TU581209 other upstream 1225174 45217727 ~ 45220782 (+) False LOC110526028
TU581131 other upstream 1260087 45184439 ~ 45185869 (+) True G512192
TU582823 other downstream 438604 46900561 ~ 46901123 (+) True G513745
TU583592 other downstream 464885 46926842 ~ 46927714 (+) True G514464
TU583628 other downstream 560337 47022294 ~ 47023092 (+) True G514499
TU583803 other downstream 841226 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 844481 47306438 ~ 47320050 (+) True G514665

Expression Profile