RNA id: XM_036980256.1


Basic Information

Item Value
RNA id XM_036980256.1
length 4897
RNA type mRNA
GC content 0.50
exon number 23
gene id msh3
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46574935 ~ 46708962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGCCATCCGCAATTACAAATTTAAAGAAGAAGAAGCGAGGAAGAGACCCGCGTATTCGCAAATATCAAAGCTGAAACAAAGCATGCAATTAATTTTTCGTTATGCATGAGACTTTATATTCGCAAATTATCTGTGAAAATGCCTAAATCAATCAAGAAGTCCTGCACTACACAGACATCTATAAGTAGCTATTTCGGCGGGTTGAGCAGCAGTGCCCCTGACAGAAACGTTCAATCCGGTATTATCGGTAACTCTGTTGAGCTATGCGCTGGGCTGAAACCAGGACCTAGAGGAAAGCATAAGCATTCTCCGAATAATAATGGTGGGTCATTATTGAAACGAGCCAAATTGGCCCATAAtggacaggaaaaggaggacatgAACTGTGAGGTCATATCCTGGCGTGTCGATGAAATCAGGGCCCCCTCCTCTCGAGGGGCAGGCagcctctcctcttccaccctgGAGAGACTGAAGGGCTTCGTCTGTCCTAGTGAGCCCCAAGGCAGAGGCCCTCTTGGGCCCGGGAATGCGGGTGGCGGGTCTGAGGATGCAGATGGTGGGCCTGAGGATGCAGGTGGTAGGCCTGGTGATGTAGGCGATGGGTGTGCTCATGGAGGTCATGGGCCTGGGGATGTAGGAGGTAGGGAGGCTGTGGCCCACAGAGAAATGACTGgtgataaagagagacagaaaagcgAAGAAGAGGAGTGGCGGAGTCCAGAGCCATCATCCAAAAAACAGGCTCTCAGCCTCATTCAGTTTGCCAAGCCaggagaaggaagaagaagaagggggggTGTAATGAAGACTCCTCCAGGAGTAGGGGGTGAAGTCTCTGTGACCAGTGCCCCCTGTGGGATCTCTAAGAGTGGGTACACTCCTCTGGAGCAGCAGTACCTGCAGATTAAAGAGCAACATAAAGACGCTCTATTGGCTGTGGAGTGTGGATACAAGTACAGGTTCTTTGGAGAGGACGCAGAGGTGGGCGTGGTGAAGCAGACAGAGACGTCGGCCATTAAGGCCTCCGGAGCCAATAAGAACACTTTGTTCACCCGCCAACTCAGCGCTCTCTACACAAAGTCTACACTGGTGGGGGAGGACGTCAACCCAGTGCATAGTCTGGTTGATGTGGAGGAGGGGGAGTGTGATGTGGTGACAGATCCTCCAGAGAGctacctgctctgtctcagtGAGACCTGGGATAAACCCAGAAAACAACTAACCATTGGGCTGGTGgcGGTGCAGCCCAGTACAGGTGACGTGCTGTTGGATTGTTTTGTGGACGGCTCAACGCGTTGTGAGCTGGAGGGGCGAGTCTTAAAGGTCAACCCTGCAGAGATCCTGGTGCCCTCTGACCTCTCAGACTCCTCCCACCGACTGCTGCAGAGCATCGTCACCGCCAgtgTGCAGGCTGGTGATGGTGTACGTATAGAGAAGAGGGAAAGTGCCCAGTTTGACTTTGCCTCTGCAATGAACACTGTCACTGAGTTCTACTGTCACACACAGGACTCAGGTTCCAGACCTCTCTCCAGTATAGCCTCTTTGGAAAGTCCTGTGGTCTGCTGTCTGGGTCCTCTCATCCACTACCTCACAGAGTTTAACCTGCAGAGAGTACTACTGCAccacagTTCGTTCAGGCACCTCTCCTGTGAGTCAGACGGTATGGTCCTCAGTGCTCCCACTCTCAGAAACCTGGAGATACTCACCAACCAGACAGATGGAGGTACGAAGGGCAGTTTGTTGTGGGTGTTAGACCACACCCACACCTTATTTGGTAGAAGACTGATGAGGAAGTGGGTAAGCCAGCCCCTCAAAGATGCACAGTCTATATGTGAGAGACAAGGTGCTGTATGTGAGATCCTGGAGTCTGATTCCGTCACCCTACCCTCCGTTAGAGCCCTGCTCTTCCGACTGCCAGacctggagagaggagtgtgCAGCATCTACCACAAGAAGtgttcCACCCAGGAGTTCTACCTCATCAGCAGCAGTCTTTCTCGGCTGGGGGTGGAACTACAGGCTCTGCTCCCATCCATCCAATCACAGCTCAGCTCCTCTCTGCTCCGAGGACTCCTATTGGACACACCTGAACTGCTGGCTCCCGCTCACAACTTTCTCAAAGTCCTCAACGAGAAGGCTGCCAAgtcaggGGATAAGAGGGAGCTGTTCTGTGACCTATCGGGCTTCCCAGTGCTCCAGGAGAGGAGAGTCGAGATCCAATCGGTTCTGACTGAGATACAAGACCACCGGACAGAGGTCCGATACACACTCAGGACCCCCACACTGGACTACGTCAGAGTCAGTGGACAAGAgTTCTTGATAGAGGTAAAGAACTCTATGGTGTCTGTGGTTCCGTCCGACTGGGTTAAGATCAGCAGTACTAAGGCAGTGAGTAGGTACCAGTCTCCGTACCTGATAGGAAGATGTAGGAGTCTGTCCCAGCTCAGAGAACAGCTGCTCATCGACAGCCAGAAAGAATGGACTAACTTCCTACATCAGTTTGGGGAGTACTACCACACTATGAAGAAGGCTGTTGGTAACTTAGCAACAGTGGACTGCCTGTTCTCATTGGCTGAGGTCGCTAAGCAGAGGAACTACTGCAGGCCGGTGTTGTGTGAGGGAGACCGTCAGATCGTGATCAGGGACGGCAGACATCCTGTGATAGACCTACTGATGGGAGAGCACACACAATATGTCcccaacaacacagaattacagGGTGACGGGAGGAGGACTCTGATAATAACAGGCCCTAACATGGGGGGTAAGAGCTCCTACATCCGCCAGGTGGCGCTAGTCAGCATCATGGCCCAGGTGGGATCATATGTACCAGCTACAGAGGCAAGACTGGGCATCCTGGATGGCATAtacaccagaaTGGGAGCATCTGACAGCATCTATAAGGGCCGAAGCACATTCATGGAGGAGCTGACGGAAGCCTCGGAAATTATCACCCGGGCAACCGAGAGGTCATTGGTCATCCTGGACGAGTTGGGGCGGGGCACCAGCACCCACGACGGGATAGCTATCGCCTATGCTACTCTGGAGTACTTCATCAgagatGTGAAGTCTCTAACTCTGTTTGTGACCCACTACCCACCTCTGTGTGAGCTGGAGAAGGTGTATCCTCTGCATGTAGGCAACTTCCACATGGCCTTCCTCCTCAATGAACCAGACATCGCCACAGACGacgTTGAGGTGCAGCCAGAGTTCATCACCTTCCTGTACCAGCTGACTGAGGGGGCGGCTGGGCAGAGCTATGGGCTAAATGTTGCCCGATTAGCTGAGATTCCAGAAGCTGTACTCCACATCGCCGCACGCAAAGCACAGGAGCTAAAGAACATCGTCGACGCCCGGAGaAAGAGCAAGAGGTTGTTTGCTGAACTGTGGAGCATCGACGACAGAAAGGCTCTTTTGGACTGGGTGCAGCTAAACTCCTGATCACACACACTcgaatgtgcacacacacactcagaaatcCCTGGCCGTTGTGACTCTAAGCCTGGTTTGTCCTCTTGTGTTCTCCATAAAGTCTCTCTAGCCCTGACTCAGGAAGGACTAAAGCCCTgagggaacaggaggaacagCATTAATCTCTGTATCTATAGAAAATGGACACACACACCATTAAATGCCAAAGCACATGCAAGTGCGCGGCGGATTAGCGGGGCCAGTGATGCGAGACCTATCTCTAAACCCagtcattttttttattgaacctttattaaactaggcaagtcagttaagaacacattcttatttgcaTTGACGGCCTACACAGGCCAAACCCGGgtgacgctgagccaattgtgcgccgccctatgggactcccaatcacggccggttatgacacagcatggatttgaaccagggtgtctgtagtttTTCTTTGGTACCAGGTAGTTTAATTGTATTAAAGTAAGTAAATACCTAAAGGTACCCAGTTACCACATAGATTGTTGGTCAATACCAGCTGAAACAGCAAGTTTATCTATGGTTAGGGAAACTCATAGCGTTAATGGCATGGCTGAACGCTTGCTGTGAATCCAGTATGAGACCGCGCAGAGAAGCAGGGGATAGCGTTATTTTGACAAAGCATAGGCGAGAGACGTGCTTTGATAATGCAACCTATGGTTTACAGAATGAAGTCAGGAATTTGCATTTGAGACAGGATTTAGGATTTTGGTTTCAGTGTGATTGGGACTGGATAGGAAAATAGCCTAGGCTCTAGGACAGGAGAAGGTAGTTTTCCCTCATGCCTCTCTGAATTGTTCAGACTTCATGTCTGTGACAGAGAGGCCTATGTAGTGAATTTTGCATAGGCCTAGCAAATTTGAGACTGTCTGAAGAGACACAATGACAGCTCAAAGAGGCACATGTTATTTTATAGGTTACTGTAGGGGTTTCCTGTAGGGTTTATTAACTGCATTCAGGTCCCGTGTGCAGTTCAGCAGTGTGCTTTGAATTCATGGCGACTTTGTGTGAAGTAAATGCGCTAGGCTAAAGGCAACCTGTTTTGGATAATGTGCTATTTTATTTTCTGCTAATCTGATGCTGCGTATGTTGTGTATTTTGTGGAAATGCATTAGTTCCAACATTGGGTAATATTTTTGTAATTTCCCAGGTCTTGTCATTTACATTTTTTGGTTGAAATGTGAATAGCGTCCCCGGGACAGTCCCCGGCTCCTGGTTACCCATGTTAATCCCTAATTCAGATTTagtctgggtgccagtctgtttagctatcaTTCTACTCCTTGCCACTCCTGTCATTTGGCAAGTGACAGGAGTGGAATGTTATCTAAAATGACTGTTACCTAGCCTAATTCAGGCTGTGTGGGTAGAATGAATTCAGGCTTGTAcaattcaataaaaaaataactttATTCAGA

Function

GO:

id name namespace
GO:0006298 mismatch repair biological_process
GO:0030983 mismatched DNA binding molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K08736 MSH3; DNA mismatch repair protein MSH3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582588 lncRNA upstream 60065 46503288 ~ 46516159 (+) True G513523
TU582587 lncRNA upstream 68689 46491404 ~ 46507535 (+) False G513523
TU582565 lncRNA upstream 208369 46367652 ~ 46367855 (+) True G513502
TU582485 lncRNA upstream 308691 46263122 ~ 46267533 (+) True G513427
TU582436 lncRNA upstream 380216 46195776 ~ 46196008 (+) True G513380
TU582824 lncRNA downstream 192588 46901550 ~ 46903598 (+) True G513746
TU582826 lncRNA downstream 196727 46905689 ~ 46905904 (+) True G513748
TU582827 lncRNA downstream 197559 46906521 ~ 46906796 (+) True G513749
TU583544 lncRNA downstream 198152 46907114 ~ 46907423 (+) True G514426
TU583545 lncRNA downstream 198915 46907877 ~ 46908171 (+) True G514427
XM_021606649.2 mRNA upstream 8589 46542604 ~ 46567635 (+) True LOC110526049
XM_021606645.2 mRNA upstream 61468 46471484 ~ 46514756 (+) False LOC110526048
XM_036980258.1 mRNA downstream 13998 46722960 ~ 46900004 (+) False rasgrf2b
XM_036980260.1 mRNA downstream 13998 46722960 ~ 46900004 (+) True rasgrf2b
XR_005052125.1 mRNA downstream 222122 46931084 ~ 46935277 (+) True LOC118964876
XM_036980261.1 mRNA downstream 248540 46957502 ~ 46978128 (+) False LOC110526054
XM_021606657.2 mRNA downstream 248545 46957507 ~ 46978128 (+) False LOC110526054
TU582564 other upstream 215639 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 385932 46187000 ~ 46190292 (+) True LOC110526042
TU581924 other upstream 939974 45635589 ~ 45636250 (+) True G512912
TU581209 other upstream 1355442 45217727 ~ 45220782 (+) False LOC110526028
TU581131 other upstream 1390355 45184439 ~ 45185869 (+) True G512192
TU582823 other downstream 191599 46900561 ~ 46901123 (+) True G513745
TU583592 other downstream 217880 46926842 ~ 46927714 (+) True G514464
TU583628 other downstream 313332 47022294 ~ 47023092 (+) True G514499
TU583803 other downstream 594221 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 597476 47306438 ~ 47320050 (+) True G514665

Expression Profile