RNA id: XM_036980258.1


Basic Information

Item Value
RNA id XM_036980258.1
length 6016
RNA type mRNA
GC content 0.49
exon number 29
gene id rasgrf2b
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46722960 ~ 46900004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagggagagagaggcggtgTCAAAGCCAATTGTTGCTGATCTAGGCGGTGATTCGACCACACTGTTTGTCCTCTCCAAGGCTTTCCCCCTCTCTGCTTTGCGAACAATAACCTTTCCATTTTCTGCATCTCATAGCCTACTCTTTCCTCCATCTGGGATTTTGTCTACCTTTCTTTTCAACGTTTGGCAGATGTGGACATGGATCGTATCGGGGTTTATTAAGATGTCGTTGACGGGGTCTCTCTCGAATATGAGTTTCCCCGCAAGAGCTCTCACTTTGGCGGAGCAACTTTCCCGTGCACCTCGGCGCTCAGCCTGGTGACCACTTTCCCTCTTCATTCACTGAAAGGGGAAGTTTAAACACACACCGGCGGATTTGGTCTCGCATTCAATAGCCTACACACGGTTTTATAACAAACTAAAAGGATTAAATTAAAATGCAGAAGAGTGTCAGGTTTAATGAGGGACACGCTCTGTACCTCTCAGTCGTTGCGCGTAAGGAGGGTACCAAGCGCGGTTATTTGAGCAAGAAGACCACGGAGAACAGCAGGTGGCACGAGAAGTTCTTTGCGCTGTACCAAAACGTGTTTTTTTACTTTGAAAACGAGCAGAGTGTACGCCCCGCCGGGATTTACCTCTTGGAGGGCTGCACCTGCGAGAGCGTGCCTGTTCCGAAGGTCTCCACTGCGGGAAAGGAGACCCTCGacaaacagCACTACTTCCTGATCGTGTTTGGCCATGATGGACAGAAGCCTCTGGAGCTACGGACTGAGGAGGAGAATGAATGTGATGAATGGGTGGAGGCCATCCAACAGGCCAGcTACTCTGACATCATCATCGAGCGTGAGGTCTTGATGCAAAAGTACATCCACCTGGTCCAGATTGTGGAGACAGAGAAGGTGGCAGCCAACCAACTACGTACTCAATTGGAGGATCAggatacagagatagagaggctCAAAGGAGAGATCGTTGCCCTGAACAAAACCAATGAGAGAATGTGGCCTTACCATGTAAACCAAGAGGATGAAGACCCAGACATAAAAAAGATTAAGAAGgtgcaAAGCTTTATGCGTGGCTGGCTGTGCCGTAGGAAGTGGAAGCTGATAGTTCAGGACTACATCTGTTCTCCCCATGCTGAGAGCATGAGGAAGAGGAACCAGATCGTCTTTAACATGGTGGAGGCCGAGACAGAGTATGTCCACCAGCTGTCTATCCTGGTTAACTGTTTCCTGAGACCTCTCCGCATGGCCGCCAGCTCCAAGAAACCTCCAATCAGTCACGATGATGTCAGCAGTGTGTTCCTCAACAGTGAGACCATCATGTTTCTACATGAGATATTCCACCAAGGTCTCAAAGCCCGGATAGCGAACTGGCCTACACTGGTATTGGcggACCTGTTTGACATCCTGCTGCCTATGCTGAACATCTACCAGGAGTTTGTGAGGAACCACCAGTACAGCCTGCAAGTGCTGGCCAACTGCAAGCAGAACCGAGACTTCGATAAGCTGCTGAAGCAGTATGAGGCTAATGCTGCCTGTGAGGGCAGGATGCTGGAGACCTTCCTCACATACCCCATgttccagATTCCTCGTTACATCATCACTCTGCATGAGCTGCTGGCGCACACTCCGCACGAACACGTAGAGCGCAAGAGCCTGGAGTTCGCCAAGTCCAAACTAGAGGAGCTGtcaagGGTGATGCATGATGAGGTGAGTGATACAGAGAACATCCGTAAGAACCTGGCCATCGAGAGGATGATTGTAGAGGGATGTGATATACTACTGGACACCAGTCAGACCTTCGTCAGACAGGGTTCTCTGATTCAGCTGCCGTCGGTGGAGAGGGGTAAGCTCAGTAAGGTGCGTCTGGGCTCTCTGTCTCTGAAGAAGGAAGCAGAGAGACAgtgcttcctgtttacaaaacACTTTCTGATCTGCACACGCAGCTCAGGAGGCAAGCTGCACCTGCTCAAGCAAGGTGGAGTCCTATCTCTGATAGAATGTACCCTCATAGAAGAAACAGAGACCAGCGACGACGActCGAAGTCCAGTGGTGGTCAGGTATTCGGTCAGTTGGACTTTAAGCTGATCATCGAGCCGTCTGACTCACCCTCCTTCACTGTAGTCTTGTTGGCTCCCTCACGACAGGAGAAAGCTGCCTGGACCAGTGACATCAGCCAGtgtatcgATAATATCCGCTGTAATGGTTTGATGACTAGTGTATTCGAGGAGAACTCCAAAGTCACCGTGCCTCACATGATCAAATCTGATATGCGCCTCCATAAAGATGATGTTGACATTTGCTTCAGCAAGACACTCAACTCCTGCAAGGTCCCACAGATTCGCTACGCCAGCGTCGAGCGGCTGCTGGAAAGGCTGACGGACTTGCGCTTCCTCTCCATCGACTTCCTCAACACCTTCCTCCACACCTACCGTATCTTCACTACTGCTGCCGTGGTCATGGATAAACTGGCTGACATCTACAAGAAACCTTTCACCTCTATACCTGTCAGGGTACAGTACCACTCATTTGACCGCCTGTCCATCACGTCCATCTGTCCTGACTACAGCCTGAAGATCAGGAAGATAGCCCTGGATCAGTCCAAgtctTTGGAATTGTTCTTTGCCACCAACCAGAACAACCGAAGTGGTGATCACACCAATGACAAGTCCCCCCGTCTCTGCCGCAAGTTCTCcggtcctctctccatctcctcccgcACCTCCTCTCCTGTCCGCACACGCAAACTCTCTCTGCATTCCCCCATCAGTGCCAGGGTGGGGGGGCTGGACCTTACTAATATTaactctatcccctcctccttctctcagtcCGCTGTCAGTAGTCCATCCTCAGCCCAAACCCCTACATTCCCTACCCCCTCCCCCCAGACCCCCACTACCACCtccccccctcccacctcctcctcgtCCCCTCCAGGTGGCAACAAGAGCCCCCAAGACCAGgcccccctccccccctgtcTACCTCTGTCCTACCCCGAACAGAGTCCCTCCCCCACTGCAGAAGGGCAGGAGCTGCCTCGTGTTGACGCCTTCTGTGGAAAAATGAGACGCAGCATCCGCAGAGCTGTCTTGGAGTCTGTCTCAATGGACAAGTTCATCCCTGAGTCGCCTCAGAACAGCGAATCAGGAGAGGTCTCTCCCTGCCGCTCCCCCTCCACCCCACGACACTTCCGCTACAGGCAGCCTGgagttcaATCAGGGGAGAACTCTCGTTGTTCTGTTTCTCCTGCCTCAGCCTTTGCTATTGCTACAGCTGCAGCAGGACATGGCTCtcccccagtGTTTAATAACTCAGAGAGGACATGTGATAAGGAGTTTATCATCAGAAGAGCTGCTACTAACAGAGTCCTCAACGTACTTCGACACTGGGTCTCAAAACACTCCCAGgACTTTGAGATGAACAGTGAGTTGAAGATGGGAGTGATCTGTCTACTAGAGGAGATACTCAGAGATCCAGACCTATTGCCACAGGAGAGAAAAGCTACTGCTAATATACTAAGTACCCTTTCTCTGGATGAGCAGGAAGCAGATGCCCAGCTGAGAATAGAAGACATCCTTCAGATGGTGGAGTGTCCTAGGTCAGAGTGTTTTGAGTCTCTGTCTGCCATGGAGCTGGCTGAACAGATCACACTACTGGACCACATCGTCTTCAGGAGTATCCCCTATGAGGAGTTCCTGGGGCAGGGCTGGATGAAGGTGGATAAGTCTGAGAGGACTCCCTACATCATGAAGACCAGCCAGCACTTCAATgatATGAGTAACCTGGTGGCGTCTCAAATCATGACCCATACTGACGTGGGCTCCAGGGCCAACTCTATTGAAAAATGGGTGGCTGTGGCCGACATCTGCCGCTGCCTCAACAACTACAATGGAGTCTTAGAGATCACCTCAGCTCTGAACCGCAGCGCCATCTACAGGTTGAAGAAGACATGGGCCAAAGTCTGCAAACAGACTAAAGCCCTGATGGACAAGCTGCAGAAGACTGTGTCGTCTGAAGGGAGATTCAAAAACCTGAGGGAAACCCTGAAAAATTGTAACCCTCCCAGTGTGCCCTACCTGGGTATGTACCTGACTGACCTAGCCTTTATCGAGGAAGGAACACCTAACTTCACTGAGGAGGGCTTGGTCAACTTCTCCAAGATGAggatgATCTCCCACATCATCCGAGAGATCCGCCAGTTCCAGCAGACACCCTACAGGATAGAACACCAGCCTAAGgtGACTCAGTACCTGTTGGACAAGACTCTGATCATGGATGAGGACACTCTCTATGACCTCTCTCTTAAGATAGAGCCCCGCCTACCGGCCTGAGGGACAGTCACTGCGAGCAACGGGACCCTGGCAACCCTGTCCCTCTATGTGGGCAACACGCCTGCATACCTGGGATAATGAACGACAAAGAGAGAGTGGATTattgaagagacagagagaaaaagagagcgagagagagagagagaattgagaagGAACGTAGGGAGAAAATCCTTGTTGTTTTTAGACGATGATGGGGTGATCTTTTGAATGTGTTTTCTGCGAGGAAGGGTAAACAGGAAGTGAGGTGTCATTGTGTGACCTCATCATCCCTCTCCCAGGGCGTGACATCATTGACGTGAAACATGGTTCTTCTGCCAGCAGATCATATCAGAGTTGGTGGAGATTGTTCAATCTTTGGGaaaatctcaaatggcaccctgttccccatGTAGGActgcactacttagggaataggttgccattgaGACACTTTTTTGTCTTTGAAATTTTTAAAAGGTGTATCGTAAGGAGATGAAATGTAGCATGTATAGCTCTAAGAGTCTGGACTTGTGTATGTTACGCTGTGCTGCTTTACTGTGCCATGTCCTTGAGCTGAAGCACCCATGCTTTCACACCAAATGGTGATCACTTGACTTTGCATGATCCTAACTGGGGTTTTAGTGTTTATTTGGCCTTGGTCCTGACCCCTGCATGTTAACATGCTTCACTCTCTTTGGTCTCTGAAGACTACACAACCACTATGCATCCCCATCCACCAATCATAAATCACTTTATTAGGAGGGTCGGACGGAATCTATGAGGGTAGAGTTTCAAACACACCTGCCGGAATTAACTCatacattactactactacacatacTAAATGTAACGATACTGGTAAATAGAAAATCCTTTTAAGATTCAGTCTGACTGTGGTAATGAGAAACTAAGTGCTTCAAAATGAATTTTGATTTAGAAACTGGGCGGCAGATACTGTAGCCaactgggtggcaggtagcctagcggttagtgctttgtgccagtaactgaaaggtcgcttgTTAGAATACCTTAGCCAACAATCTGttgatgttcccttgagcaagacacttaaccctaatttgctccaggggtgccgtactactatggctgaccttgtaaaacaacacatttcactgcaccgaacaggtgtatgtgacaataaagtaaataaataaaaaaagcttCATTTGTAATAGTTTACCATTTATGTGCATCGTGTTGTTGAAATTGCTCTTCATAAATACTGAAATATTAATCTACAAACTGGTGACCGGTATCTGAAAGAATACAGTACAATCTGGTACTCCACATTCAGGCAAACGTTTTGATGTCTAATATCTTGTAAGCTCCACTAATTCTGTGGTTTGTCCATTTGAATGATGAGAATTAGACGCTTCAAATGTGCCTttattatagattttttttctgtAGGTAGATTCTCAGTCCTCTAAATATTCTAACAACAATACCAATCAATTCAGATGAACAAGTAATATTTCCCCCTCTTAAAATATTTTGCTGTCAAGTTAGCAAATTTCCATCTGTGGCATTCTTTGGTGAAGATTGTAGATCCCTAATAATAATGTATCTGCTCATTCAGATGGTATGGAATCATtgggtaaatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582694 lncRNA upstream 25586 46646968 ~ 46697374 (+) True G513619
TU582588 lncRNA upstream 206801 46503288 ~ 46516159 (+) True G513523
TU582587 lncRNA upstream 215425 46491404 ~ 46507535 (+) False G513523
TU582565 lncRNA upstream 355105 46367652 ~ 46367855 (+) True G513502
TU582485 lncRNA upstream 455427 46263122 ~ 46267533 (+) True G513427
TU582824 lncRNA downstream 1546 46901550 ~ 46903598 (+) True G513746
TU582826 lncRNA downstream 5685 46905689 ~ 46905904 (+) True G513748
TU582827 lncRNA downstream 6517 46906521 ~ 46906796 (+) True G513749
TU583544 lncRNA downstream 7110 46907114 ~ 46907423 (+) True G514426
TU583545 lncRNA downstream 7873 46907877 ~ 46908171 (+) True G514427
XM_036980257.1 mRNA upstream 13998 46574935 ~ 46708962 (+) False msh3
XM_021606650.2 mRNA upstream 13998 46576224 ~ 46708962 (+) False msh3
XM_021606651.2 mRNA upstream 13998 46576224 ~ 46708962 (+) False msh3
XM_036980256.1 mRNA upstream 13998 46576224 ~ 46708962 (+) True msh3
XM_021606652.2 mRNA upstream 15199 46576224 ~ 46707761 (+) False msh3
XR_005052125.1 mRNA downstream 31080 46931084 ~ 46935277 (+) True LOC118964876
XM_036980261.1 mRNA downstream 57498 46957502 ~ 46978128 (+) False LOC110526054
XM_021606657.2 mRNA downstream 57503 46957507 ~ 46978128 (+) False LOC110526054
XM_036980263.1 mRNA downstream 93592 46993596 ~ 46998667 (+) False LOC110526907
XM_036980264.1 mRNA downstream 93592 46993596 ~ 47004352 (+) False LOC110526907
TU582564 other upstream 362375 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 532668 46187000 ~ 46190292 (+) True LOC110526042
TU581924 other upstream 1086710 45635589 ~ 45636250 (+) True G512912
TU581209 other upstream 1502178 45217727 ~ 45220782 (+) False LOC110526028
TU581131 other upstream 1537091 45184439 ~ 45185869 (+) True G512192
TU582823 other downstream 557 46900561 ~ 46901123 (+) True G513745
TU583592 other downstream 26838 46926842 ~ 46927714 (+) True G514464
TU583628 other downstream 122290 47022294 ~ 47023092 (+) True G514499
TU583803 other downstream 403179 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 406434 47306438 ~ 47320050 (+) True G514665

Expression Profile