RNA id: XR_005052125.1


Basic Information

Item Value
RNA id XR_005052125.1
length 1850
RNA type mRNA
GC content 0.38
exon number 2
gene id LOC118964876
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46931084 ~ 46935277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggagattactgtcacattggaggaagaggaggaggttggGGATCTgtttaacaccaGAGAGAGACGTGACTGTTGTGGATTCTCTGtagagcctcaacaacatcatgatgCGGCacagaagagtctctccagatcagaacacctcaagaaacaccagcggacacccacagggaagaaatctcaccgctgctctgactgtgggaaaggTTGCAAATCTTCATCAGAACTTAAAATACACCAGCTAGTGCACACACGAGAGAAATCTCACCACTGTTTTGATTGTGGGAAGAGTTATTTAAGAGTAAAATCACTAAAAGCACACATgagaattcacacaggagagaaatattttagctgtgatcaatgtgggaagagttttactgcATCAAGCCATCAGattgtacaccagagaacacacacaggagagaaaccatatagctgtaatcaatgtgggaagagttttaaaaGATCTAACCATCTTATTTTACaccaaagaacacacacaggagagaaaccttatagctgtgatcaatgtgggaagagttttactcagctaaGCAACCTGATATCACacaggagaacacacacaggagagaaaccttatagctgtgatcaatgtgggaagagctttACTCAGCCAAGCAACCTGACACGACACATGAGaacacacacgggagagaaacgTTATAGCTGTGACCAGAGATAATCTGATTAAAGATCTCTGATCAAATATTATAATATACatacatgaaggagttgtttcatgatttcaatgaattaatgtcacaatgtagaatgtttaacattgtagtaggaatATTTTCATGATGTCAGAATGTAGAAGCCTAAACGTTTGCCTCTTATCAATTGATTTcagcatgatatggatattaACCTCAGGGgaaaaatccaggctctgaattgaTTTATGTAATTTAACAAAAATTGACTAACAAAAAAAAGTTGTTAAACTtacccacttgaatcaaaatgcaacacttcaaaatgtagctagctgttttCTACAAATTGTCCCCTAACCAGGGATGTACACATTACTCCCATATTCcgtgtggtttttgagctgttagttttaacaggacgtgcaacctcatctccctcctctcgcacaattgatttcaacatgatatcGATGAGTGATGACAAATAAGTGTTGCGTTCCTTTGTTTAGCGACCCCTACATTTAAATGCATCTctccaaaatgtagctgactgtcttctgcaggttgtcctctaaccagtgaggtaAAAGATATCTCcaatttccatgtgttttttgttgttgttagtttcaacagcaagtacaacctgatttcccccttaatcgatatcagtgatttattgctgcttgtgcagtttataaggtgcttgtttaaaaaaatacaagtaaTATGATTATTGTGGCAGATGTTTGTTTACATAGCACATTTTTTGTTTAGATTTTCAATATATCACTAACGttctgcatattggttattgatttaGACACGTTaaaactgtgttttgacattgtCGTTGAAAATCTGTTGAAAGTAGACTATGCAACCAAATATTTAATATTTACATTTCATGTAACATTTAGTAATGATAATTATTCATGCAACTAACTGACCATTTTTTTTGTACAATTATAATGACATTGTTGCCCTGCTTTTATAATATCAGGGTTCATTCTCAGATGTGCCAAACCAAATGTACTCGAGCATGACATTGGGGACTGGGCCCAGATCCAACAACATGCCTATCTAGTGAAccctggaaagagagagaaggtccGCAGTGAGGTGGAAAATTACTACGGATATTGCAGGAGTTTCCTCTTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583588 lncRNA upstream 1298 46929398 ~ 46929786 (+) True G514460
TU583572 lncRNA upstream 10530 46919624 ~ 46920554 (+) True G514449
TU583563 lncRNA upstream 15824 46914969 ~ 46915260 (+) True G514440
TU583554 lncRNA upstream 18230 46912602 ~ 46912854 (+) True G514436
TU583551 lncRNA upstream 20173 46910533 ~ 46910911 (+) True G514433
TU583581 lncRNA downstream 266 46935543 ~ 46978111 (+) True LOC110526054
TU583587 lncRNA downstream 33647 46968924 ~ 46973262 (+) True G514459
TU583583 lncRNA downstream 66390 47001667 ~ 47002143 (+) True LOC110526907
TU583615 lncRNA downstream 70029 47005306 ~ 47005664 (+) True G514486
TU583616 lncRNA downstream 70564 47005841 ~ 47006197 (+) True G514487
XM_036980258.1 mRNA upstream 31080 46722960 ~ 46900004 (+) False rasgrf2b
XM_036980260.1 mRNA upstream 31080 46722960 ~ 46900004 (+) True rasgrf2b
XM_036980257.1 mRNA upstream 222122 46574935 ~ 46708962 (+) False msh3
XM_036980261.1 mRNA downstream 22225 46957502 ~ 46978128 (+) False LOC110526054
XM_021606657.2 mRNA downstream 22230 46957507 ~ 46978128 (+) False LOC110526054
XM_036980263.1 mRNA downstream 58319 46993596 ~ 46998667 (+) False LOC110526907
XM_036980264.1 mRNA downstream 58319 46993596 ~ 47004352 (+) False LOC110526907
XR_005052126.1 mRNA downstream 58319 46993596 ~ 47004352 (+) False LOC110526907
TU583592 other upstream 3370 46926842 ~ 46927714 (+) True G514464
TU582823 other upstream 29961 46900561 ~ 46901123 (+) True G513745
TU582564 other upstream 570499 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 740792 46187000 ~ 46190292 (+) True LOC110526042
TU581924 other upstream 1294834 45635589 ~ 45636250 (+) True G512912
TU583628 other downstream 87017 47022294 ~ 47023092 (+) True G514499
TU583803 other downstream 367906 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 371161 47306438 ~ 47320050 (+) True G514665
TU583904 other downstream 578509 47513786 ~ 47516710 (+) True LOC118964881
TU584269 other downstream 1014729 47950006 ~ 47952254 (+) True G515069

Expression Profile