RNA id: TU583914


Basic Information

Item Value
RNA id TU583914
length 4039
lncRNA type read_through
GC content 0.39
exon number 5
gene id LOC110526055
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46971364 ~ 46980777 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTAACTCCTTCTGAGCTATATGAATCAGGTCCGTGCACGTTAAActgcaggacaagatatcttttgactcaataaactgcctttttgttacaactgaaatccactctgtccagcgtccatgatttggtctcacTCTCCTGTAAGTTAATCATCAACAGAGGCGAGACAGAGGACTGGAGACCACAGCAGCGATTCTGCTCTTGCCCAACCTCTTCAATTGAGGACCCGAGTGGCCTTTATGTCCGTGACAAGTGGAAATCCATTTCACCATGAGAGTGAAAACCCGCTGGCCTTTGATGGGGAGAACATCCACGCCCTCGAGGACGTCCCCATGGGACTTGGGGCTCTGCTAgGACTCTCCATAGCTACGTAGCAACTCTCCAAACTCCCAGCGGAACcaaaaataaacttttgtttccCGGACAATGATCATGGGATCGTCAACGGTTCTCTAACCTCCCAGAGACCACGGCAAAATCAAGCCTCCCAGGAACTATAGACCTTCAGCTGCTTTCTAAAATGTCAATCATCTGATTAAGCATATTTCTATATGTTACTATCCAAACGTCAGATTAAGACTCATTTCCATATTCACACAACTCTCATATCAGTCACACAATGCTATTCCCAAACATACCTAATCAATTAGTTGTTTTTCAACAATATTTTAACCTGCAGGAATATTTTCACATTTCTATCTCATGGTTAGTTCCTAGGAtaatgcaactcatacattgacaCTCAGAACCTCCTGTCTCGGCCCTGTTTACACCTCCAAGGTGCCCCCCTCACACAGGAATACACACTCAGAGCCTATGAGGCTTTTCTAAAAACTCCACTTGTTTTGCTCATtttcttttctttaaaaaaaaaactacgttcgagatgtggtatccactcggctcgctGCCTCTCAGATCAAAGGTGGGTCCATCTGCTCCGTTCCCGAAGTCTGGTCTCCCTGAGATTCCAAGTTTGAGGGATCCCTCCACGATTTACCCACGTCGTGAGGAGCGGTCACCAAGTCAAGATTCACATCCCCATTGCCAAatgtggtggttaatttctttaATATCAAATGAGAAACAAACTTATCACATAAGTCAGAGTTAttcttaaactaaatctttattcacttaataataagggagcaggtcaatacaacacacacatataaagtgaATCAATTGAGTGCTCTACGATAATTATGGCTGGTCGACGAATCACCCCCAGATGATTAGTTGAGAGCCCAGATACAAAAGTACAAAGGTATTTTACAGCCAATTTACACCCCTTTCAATCTACATGACGAACAACCAATGTAAAGAATGGGTCACAAGATAAAGATTTGTATGGAAGATATAATTctcagcagacagtatctgctgtaaaaacagtactctttgtgtagagaccagggtctggccctggggtcatctctccctggtaccacatagaacagaaacattaactcataaTCTGGAATGTGGTCTCTTCATGTATTATCACCCAAAAGACattgtaaatctcctgtcagtgttatctcccagaggcccatcctcagtagaacacacagacacaatagttcTAAGAAtcctctattctgttgcataaaacaaccatttgatgcaataaaagtataataacataatcttgcaattttgctctcagtgtccactgaaagttgactagtaacaacaactgggacctaaaagacacccaccatgagacccattaaatctgcccaagaagaggcaaacaaaagaaaaacccacaactaacttaaaaacaggaagcaaaccaaagcGGTAGCGCAACTAAAGGTGTTGATTTgtcacatctatcaagacaactggagcactgggccagacactcttaaatataaCCTGAAtcagctcaggtgaaacaccttcccactaacgagatggacaagccagcaaaGGTGGAACACATattgactaacgaggtgacaccaaaaCGTGCTAACGttcaacctcaaaacataaatggaaaaactaAAGTCTGTAACACCTTCCTCCTTAAGACAAATATATCCTGTTTTTGTTGGACAAGTTTGCTTACCACCAAGagaaaacaacttccatttcacaTTATAATCTACTATAATGCTTCACCTTCTACAATATAAACATGGTGTCTACTGGCTAtcaacaattaaaaacaagaaaaaacatTTGTAAACAATATATACAATCATATTATTTTTATATCCCTTTTCTTACTATAAAACTCATCTTCCTAAAACCCACTAGCTTCTGGAACTCTCATCCCCTTGGAACGAGCTCAAACAAAACTCATCTCCAATACAGAAAAACATGCAATAAACTGTGATCCATGGCAACGCACTGGCTAAACGTAAACACTAAACTTTTTGACTACCCACCCTTGAGACAATCAGCAACCAAGTTGTCCTTAACACAGACATGTCTGATTTCAAGAGGAAACTCCTGCAATACCCGTAGTAACTTTCCACCTCACTGcggagcttctctctctttccagggTTCACTAGATGTTGTTGGATCTGGGCCCAGTCCCCAATGTCATGCTCTAGAACATTTGGTTTGGCACATCTGAGAATGATCCCTGATATTCTAAAAGCAGGGTAACAATGTCAATATAATTGTACCCAAAAATCGTCAGTTGGTTGCATAAATAATTATGATTACTAAATGTTACATGAATTGTAAATATGAAATATCAAAACCAAATGTACACCCCTTTGTTAATATGTATTAGCAATAATTAACTAAATTGAAATATTTGTAGGTGATTTGAGTCATGCTTCGTCATTATTGGAATAAAGACATTTAGCACTTGAATGTTGTAAataaatactggagtgatgtaGGACTGTTCATAAAATTGATTATAGACCAATTTATTATACTGCGACCATGTGTATAGGCTGCAAGTACGTTGAAATTAAatagttcttttcaactttcactTTCAACTAAAACCAAACTTATATTGTATGTTTTCAACATTTTGCTAGGTGGATAGCCCCAATGTCAGAAAAAGTTTATGATAAATTGAAATCCTTAACATAAAATGTACTATCTACACAAACATCTGCCACAATAATCACATTACTTGTATTTACTTATACAAGCACCAAAAGCGAAAACTTGAAACACaactaaaaaaaaaacacatgaaaaaAGGAAATATCTTTcacctcactggttagaggacaacatgcagaagacagtcagctacattttggagAGATGCATTTAAGTTTAGGGGTCGCTAAATAAAGGAACGCAACACTTATTTGTCATCACTCATCGATTACATGTTGAAATCAATTGTGCGAGACAAGGGAGATGAGGTTGCAcatcctgttaaaactaacagctcaaaaaccacacggaatctgggaataatgtgtacatccctggttagaggacaatttgtagaaaacaaatcgctacattttgaagtgttgcattttgattcaagaGCGTCACCAATGTGGTAAGTGTAACAACTCTTTTCTTGTTAGTCACTTTTTGTTAAATCTCATAAATAGTACTCTCtcaattcagagcctggatttttcCCAAGGCTAATATCATGCTGAAATCAATTGATAAGGGGGCAAACATTTAgggttctacattgtgacatcattaaaatactcctccTACAATGTGTTAATATTCTACACTGTGACATTAATTCATTGATATCGTGAAACAACtccatgtattttctgatgtttagtCAGAGATCTTTTATGAGagtatctcttcccacattgattacagctatgagatttctttactgtgtgtgttctctggtgtgccTTCAGCTGATTAGAcatagtaaaactcttcccacattgattacagctataagatttctttactgtgtgtgttctctggtgtgcaGTTAAACGGCTAGATctagcaaaactcttcccacattgaatacagctataaggtttctctcctgtgtgtgttctatgGTGTGCCTTCAGCTGACCAGACAtaataaaactcttcccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583918 lncRNA downstream 45086 46929809 ~ 46930030 (-) True G514747
TU583913 lncRNA downstream 46785 46927999 ~ 46928331 (-) True G514744
TU583906 lncRNA downstream 50556 46924026 ~ 46924560 (-) True G514737
TU583568 lncRNA downstream 58576 46916305 ~ 46916540 (-) True G514445
TU583553 lncRNA downstream 63641 46911136 ~ 46911475 (-) True G514435
TU583942 lncRNA upstream 23792 47004110 ~ 47004357 (-) True G514769
TU583953 lncRNA upstream 30443 47010761 ~ 47011827 (-) False G514776
TU583950 lncRNA upstream 30877 47011195 ~ 47011827 (-) True G514776
TU583909 lncRNA upstream 53512 47033830 ~ 47035938 (-) True G514740
TU583910 lncRNA upstream 62649 47042967 ~ 47043364 (-) True G514741
XM_021606643.2 mRNA downstream 503984 46461363 ~ 46471132 (-) True rnf215
XM_021606642.2 mRNA downstream 503985 46461363 ~ 46471131 (-) False rnf215
XM_021606644.2 mRNA downstream 503985 46461363 ~ 46471131 (-) False rnf215
XM_036980253.1 mRNA downstream 503985 46461363 ~ 46471131 (-) False rnf215
XM_036980251.1 mRNA downstream 544509 46367701 ~ 46430607 (-) False LOC110526044
XM_021606655.2 mRNA upstream 65175 47045493 ~ 47056805 (-) True utp15
XM_036981752.1 mRNA upstream 366516 47346834 ~ 47349012 (-) True LOC118965029
XM_036981754.1 mRNA upstream 371393 47351711 ~ 47353889 (-) True LOC118965030
XM_036980273.1 mRNA upstream 526845 47507163 ~ 47511010 (-) True LOC118964878
XR_005052130.1 mRNA upstream 553498 47533816 ~ 47534526 (-) True LOC118964883
TU583552 other downstream 64166 46910658 ~ 46910950 (-) True G514434
TU583053 other downstream 544756 46370690 ~ 46430360 (-) True LOC110526044
TU583050 other downstream 614230 46359888 ~ 46360886 (-) True apba1a
TU581656 other downstream 1698729 45274638 ~ 45276387 (-) True znrf3
TU580172 other downstream 2764451 44209465 ~ 44210665 (-) True nf2a
TU583955 other upstream 35844 47016162 ~ 47016496 (-) True G514777
TU584295 other upstream 994475 47974793 ~ 47976975 (-) True G515094
TU584332 other upstream 1283675 48263993 ~ 48264977 (-) True G515122
TU584340 other upstream 1312528 48292846 ~ 48297527 (-) False LOC110512142
TU584341 other upstream 1312528 48292846 ~ 48293454 (-) False LOC110512142

Expression Profile