RNA id: XR_005052126.1


Basic Information

Item Value
RNA id XR_005052126.1
length 3017
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC110526907
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46993596 ~ 47004352 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGACGGTTCTTCAGAAACGGCTCGtcaaccacctcggtagcttgtTAGCCAACATAGCCGAAAGATTCAAGCTATTTATACGCTTTCGGTGTATATTAGCTACTGTGTTTTAGACACACTTCTGTCTTATCTTCTTGTTAACCTATTTAATATAATATTACGTTATTTTTTATTAGTCAGctatagtagctagctggttAAGTTAGCACTAGTCTAGTCGCTAAtgatatctagctagctaacatcccagAACATGAGCTCCCTAAGTTACTCCCCTCCTgttaaagaagaggaggtctgctggacaGAGAAAGAAGATCTggggctgaacattgtcgtgaaagaggagaaggaagaggaggatgtcacagtaaaacaagaagtagagggtgaggctgttacagtgaaagaagaagagaaagacgtttttGGAATGAAGGATGAAGAGGGGGAGATCACTGTCACATTAGAGGAGGACGAAGAAGAGAAGACTGGAGaactgattaacaccagtaaatacaGGGACAGCAGAGGAACTTCATCGATTCCACTCCTTCATCAATACCAGCAGTGAACATCTGAAATTCACCCTCACCTTTGATGAGCATGAAACAAACTACACCCCTAAAAAAAGATCCTCCCCATTAGCCAATACAGTCGCATACACAGGATTTGTAGTACACAGAGTGACTATGACAAACAAGACCAATTGTCTGGATGAACGTTTCAGACAGCGGGGTTACCCAGACTGCATGACACAAGGGATCGTTATAAAAATATAGTGgatgaaaaagtacccaattttcatacttgagtaaagaaaacatttaaaatgtcattttaATTTTGTAACTATTAAACAAAAACATAACTGTTTGTACTTATATGGAACCAGATCGTGACTACAAATAAGTTACTAAATCTTTAACCGCACTGTATTGTTACACtggtgagtaaaaactcatgcCTCCGACCCTTTAACTTTttgtctgaaaataaaatatacattGTACTCAACTGCGTCCAGTCAGCAGATGGACTGCCCTATCCAGAATAGCCTCCTCTCTCACTGACAGTTGGGGCTGCTGTCCTTTCACCCTCCtccatggctgttagctagctaccaacaAATGCATTTGGATTTAGttttttacagtggtaaatagaTCAAGATAGCTAATATGAAGTTAGGTAAGGGGTGATATTCAATTCACTTAGCTATCTATCTATACAGTATTTGAAGTTGGCTAGATAGCTCAtttagcagctcatttgagtCAGCCTGCACTGTAGCGAGTTAGCTAATAATACAtcgtttttttatttatattttcaaaatctatttacttacttacttgaataggttctcccagcCATGTGGACAACTGGAAACAGGGCAGTAAAGGTTGTCACCAGAGTGTTTTAGAGGATATTACTATTGATCTATGTACCCATTTaataaccagaccttcatacaaacttgctCTGCTGAATTCTTGACGGAGTCACATCGGGCAGCCTAAGCGGCACCTTTTGTGTAGTTCCTGTCCCTAGAAGTGAGGACGGAGATAATAGTAACATAATATTCAGTGTGGTGTAATTTGACTATAATGAAGTCTGTTTCTTGTgaggttttctgtcctcagataaagAACGCTATGAAAGCCAGTCTACATATGAAGAGGTCCCAATGAAGAGCAGTAGTTCTCAGTCCTGGGGACTCAAAGAGAGGCACATTGTTGTTTTTGCCTCAGCACtgcacacagctgattcaaatgatcaactcatcatcatcaagcttcaagtggtatttatttattcatttgtgATGCCATCCTTGATATGATCCTGTTATTGTCACATGCTACACATGCACATGTGTGCCCATGCATCTATCAATCCAATGTTATGTTTAGGTAAGGGTGTGATGTCTGTGCAAAAACAAAACAGGCTATTTTAAATCACCCATATTGAAAAAATGTAGAACAATTAGACACCATATaacccacacctacacactcatgtATCAATCTGATTGTTGTAACTGTTTGTTATAACTGATTGTTGTAACTGATTGTATAACTGTGGCTCCTTCCACAATCAAAGAACAGACAAGAGGGCCAaacatggagaatagtaagacacttcattattcattattattaacTATGCTAGATTGTTTGTCCGTtcatgtttttcagcataaagtccTCTGCAGCCACCAGGTGAGGCcacacacagattcctgttggctttaactaccttattttctcaataactgtctgtctccttcacttcacccctctctcctcttctcccgaaatcctctaggttatatcagctgtgtcggtgaacccctcccgcatctgaactggctacatAGAGGGCACCGCATGTTCAGgacaacaggaagtattattaaagagatgctttacattgaaatacagatagagatgcagtagtcccagagttaatgctcccaggtcagtttatattatacaggaagtattattaaagagatgctttacattgaaatacagatagagatgcagtagtcccagagttaatgatccaaggtcagttttgcatttcacctcctaaTTGATGACTAACAAtgttagaataaaaaataaaaacacaaggcttaaacatgctctctctctccatctgtctctcctctgcaggtatgttttgatgtgagaggaaGCCAACCCCCAATCccatcatcgccacctcaccTGCTTTTAAGATGACCTTTGGGCCGACTAGAGACACTtttatgtaattgtgatgaactgagagaatatttatGTAGCACTGTGATTCATTAATCATGTGCTTCCTTCCCTGCTCCTATGtgcttacctctttccctttgtcTTTTACACCTCTTGCACCaactcctctttcttcctctgtttttataATGCACAACAGATGTGCATTGAAGGACAGATTGAACGTGTATTTATAACACTTGGATAATGAGcttttcaataaagcgtttcacattctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583581 lncRNA upstream 15485 46935543 ~ 46978111 (+) True LOC110526054
TU583578 lncRNA upstream 17029 46933793 ~ 46976567 (+) False G514453
TU583587 lncRNA upstream 20334 46968924 ~ 46973262 (+) True G514459
TU583593 lncRNA upstream 60468 46932202 ~ 46933128 (+) True G514465
TU583588 lncRNA upstream 63810 46929398 ~ 46929786 (+) True G514460
TU583615 lncRNA downstream 954 47005306 ~ 47005664 (+) True G514486
TU583616 lncRNA downstream 1489 47005841 ~ 47006197 (+) True G514487
TU583622 lncRNA downstream 12258 47016610 ~ 47016813 (+) True G514493
TU583623 lncRNA downstream 12635 47016987 ~ 47017236 (+) True G514494
TU583624 lncRNA downstream 12958 47017310 ~ 47017547 (+) True G514495
XM_036980261.1 mRNA upstream 15468 46957502 ~ 46978128 (+) False LOC110526054
XM_021606657.2 mRNA upstream 15468 46957507 ~ 46978128 (+) False LOC110526054
XR_005052125.1 mRNA upstream 58319 46931084 ~ 46935277 (+) True LOC118964876
XM_036980258.1 mRNA upstream 93592 46722960 ~ 46900004 (+) False rasgrf2b
XM_036979106.1 mRNA downstream 106460 47110812 ~ 47119011 (+) False si:dkey-88e18.2
NM_001124392.1 mRNA downstream 106698 47111050 ~ 47117959 (+) True si:dkey-88e18.2
XM_021606654.2 mRNA downstream 146548 47150900 ~ 47217434 (+) False LOC110526052
XM_036980265.1 mRNA downstream 146810 47151162 ~ 47217434 (+) True LOC110526052
XM_036980267.1 mRNA downstream 391015 47395367 ~ 47398426 (+) True LOC118964877
TU583592 other upstream 65882 46926842 ~ 46927714 (+) True G514464
TU582823 other upstream 92473 46900561 ~ 46901123 (+) True G513745
TU582564 other upstream 633011 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 803304 46187000 ~ 46190292 (+) True LOC110526042
TU581924 other upstream 1357346 45635589 ~ 45636250 (+) True G512912
TU583628 other downstream 17942 47022294 ~ 47023092 (+) True G514499
TU583803 other downstream 298831 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 302086 47306438 ~ 47320050 (+) True G514665
TU583904 other downstream 509434 47513786 ~ 47516710 (+) True LOC118964881
TU584269 other downstream 945654 47950006 ~ 47952254 (+) True G515069

Expression Profile