RNA id: XM_021606654.2


Basic Information

Item Value
RNA id XM_021606654.2
length 8161
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110526052
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47150900 ~ 47217434 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAGCTGCATTGTGAAGGGGCTTCGTGTTGATAAATCTGACACTCCGCAAACCGCCATGTAACACCGACGAGGAAAGAGCCCGATGTTGTCTCCCTTTCCTCCGCTCTTATTTGGCTTCTATTCAAATTTGGGTCAGGGGTGAGAAAGCCCAACGTCACAAGCTTGCAACATGGCGTCCCGAAGGCTGTGAGATGAGCAAGAGGATGGTACATTGAGAACGATTCTACCGATGTAAAAAGGTGTTGCTTgtgtaggaagagagagaaaaggaagggaAATGGAACTGCCAAATCATGCCAAACAAATACTACTGCAACTCAACCAGCAGAGGGCTAAGGGCTTCCTGTGTGACGTCATCATCGTGGTGGAGAACGCTCTGTTCCGAGCCCACAAGAACATCCTAGCAGCCAGCAGTATCTACTTCAAGTCCCTGGTTCTCCACGACAACCTCATCAACCTGGACACAGAGATGGTGAATCCCTCTGTTTTCCGACAAGTCCTGGACTTCATCTACACAGGGAAGCTCCTGTCCTCATTGGACCAGAGTAATGAGCAGAACTACAGTGCCCTCTTGACCGCAGCCAGCTACCTCCAGCTCCATGACCTCGCCGCGCTGTGCAGGAAGAAGCTCAAGCGAAGCGGCGGCAAGCCTTTGCCGGGTAAACTCTCCTCCTCGGGTCCGCTCAGCCGACTGCGCCACAACAACGAGCGCCTCTCGTCCTCCGCCCTCACCGCCTCCCACAACCACTACGTCCTCGCCCCCTCTGAAGCAGACCAGCCACAGCCCGATGACGGCCTCCAGGACAAGCTCTCGGATGATGAGATGTTCATCGGGAGCACCGCCGGGAAGAATGGGACCTGCGGGAGTGGTAGTAATGGAAACCTCAGTAACGGTTTGAGCGGCAGGGAGACAGATCTGGGGCTGGACCTGTCCAAGAAGAGCCCTCCATCGGCGTGTACCACATCAGACGCACTCAGCCCTCACAGCAACTCACAGGGTTCCCCTCAATCTGCCTCAGTATCCACAACCAACAGTGCCTCACTGGATGATTCCACCATCACTCTGCCCGGTCTGGACACCACCGGCCCAGAGCCCATGGAGCTCATACCCACCCCCAAAGCCCCTGAAGACAGTCAGGCCCATCCAGACGCTCCCCTGCCTCGCAAGAGCTCCCGCCAGGTAGCCCGCAAAAAGGAGTGGCCCAAGAGAGAGGCCTCTGGCCTGAAGGCTGAGGATCGTGACCCGCCCCTGGTCAATGGTGTGATCGTGGGACCTAAAGAGGGCCGTTCATCCAGGGGTGTAGGCGGGGACAGCAGGTGCAGCTTTCCCTCAGACCAGTCCTTCCAgtgtaaagaggaggaggaaggaggggagaatgGGCAGGAGCACAGTGACCAGAGCGGGCATAGtgatggagagagtggaggaggagggcacCACAGCGCCAACTATGTGTACCGGCAGGAAGGGTTTGAGCCAGCGTTTGGGGACAACTTGTATGTGTGCATCCCCTGTGGGAAGGGCTTTCCCAGCTCGGAGCAGCTTAACGCCCATGTGGAGACGCACACAGAGGACGAGCTCTACATCAAAGAGGAGGGAGGGGCCTTTGTGAAAGAGGAAGAGGCTGAGGACCTCTCGACCCCCGTGGCTCCCACCACATTCGGCATCTCCGAGCCACGGCCCTTCAAGTGCACCGTATGCAGTAAGAGCTATAAAGACCCGGCGACCCTGAGACAGCACGAGAAGAGCCACTGGCTGACCCGACCCTTCCCATGTAACATCTGCGGGAAGATGTTCACCCAGAGAGGCACTATGACGCGCCACATGCGGAGCCACCTGGGCCTGAAACCGTTTGCTTGCGATGAGTGTGGCATGCGCTTCACACGCCAGTACCGCCTGACGGAGCACATGCGCGTCCACTCGGGAGAGAAGCCGTACGAATGCCAGTTGTGCGGTGGAAAGTTCACCCAGCAACGCAACCTCATCAGCCACCTCAGAATGCACACCTCACCCTCCTAAAACACAACATCAAGCCAAAGAAtgctttttcatttttttccccaCCTCACAACTAAACAAATGCACATGTACACTCATGCAGAAACACaggtacacactctctctctcacacacacacacacgtaaacataGATTTCTATACACAACCACCTGGCTTAGTGTGTGTAGTGGTTGTCCAGAGTCAGCATGTGGCAGGATGGTCATGGAAAACAACCACAGCATGTCCACCACCTCTGGAAGTCTAGACGGGCAGTGtacctccccttccctccctctctctgaagtTACCTATGGTGGATGTGAGGGCATGGACCGGTGGTTGTCTCTCTTATATCTTGTAAATGTGAATGGGGTACTGTTGTAACCTCAGGCCCACCTCATGCCTCTCATACACCCTCAACACCTTTACTTGGGAGTATTTAGGCCTTTGACTTTTTCAAACTGATCCCTTCTGGGGGTATTCAGGGTTCCCTCTATACTCCAACCTCATTAGTCAAACAACTACGCCATTCCTCCTTTTAATTTAGACAGGTCTAATATTATTCACTCTGTCAATGATGTACACTACAGGCAATAATTTCAAAGAATGTGTTTTTGTTGTAAGCTACTGTATATGTCCAATGCTAATGTGAGTGAACCTGAAGATAGTGGGGATGTCTGCATTCGGGTGGAGGGATGTTGTTGGTCATATCCATGCTTTACCTAAAAGTTTGATGTCTGAGTTTCCAGATGAGGGGCTCAATTTAATTTACTccagacacacactcaccttaAAGTCTCCACTCTACAGCTGGTCTCTGagtaagagaaagaggggaggtggGGTTAGTCATTTTGCCCATGAAAGCTCATCCTGgcataacaaaaaaacaaaatggagGTACTTGTTTTACTCAAAGAACCTGTAATGTTTCTGTGAATGTTTAAACTGGAAGGTCTTCGGATGTGTCTTCTTGGGGGAGGGGGAAATGGGGTGAGGGTGGGGCAGTTAGTTGAACAGGGAAGagacggggggaggggggggggggtcggtgtAGGCTGAACTTCTCGTTTGGTGGGTACGTTTATTTTTTGTCAGTATAGCTTTCCTCCCCTTACAAAAAAGAAAAGCTTATTTCGATAGGCTTGTGAACTCGCTACCTCTGATTACTCTTATGAACTCTACGTTGATTAGTTGAAAGTTACTAAATGTAATTAATTGTATAAAGTGTGTAGATAGTAACTTTTCCCCTAATGCTTTAACCTGCTTTAACCTGCCCATCTCTCAACACAGGTTTTTCATGCTTTTTAGATTTGTACATGTTAACATAACATTATGTTAACAACTCTGTCTTTTTTTTTACTTCTTGTCATAAAGATAGCTTTCCGGGTGCTCTTCTCAATGAACAGGCCCCCACCTCACAATGTACTGTATTTTCTTGCAAATAGTGGTTAGTGAGTTTAGATGCACAGTGTTCCAAAGATCTAATGAATGTTAAGGCGAACGGAGCTGACTAACACATTTTGCTCGACAAGTTCATaaccaaagtaaaaaaaaaaaaaaaaaagatataagaTATATAGCATACTTAATTATTTCACCTTTGATTTGTCTTTTTACTGTATGAAAAAACAATTTAAGAATTGTATTCTAGGTCCAGACAATTGAAACCCACAGTTGTGTTGGACTATTGACCAATGACTCTTGAGACTCTTGAGTTTCTGTGTGGTTTGCGAGGAAAGCCTGTGCTGATTGGTGGGCTGGTGTTAACATCAACTTTACATGTAAAGTAACTGTAGAGTTTACAATGTTCCCTgaactttatttttatttgtaacaaGGGTCCTTCTCATCACTTTATATTCCCTGACCTAAAAGCAGGACTTGATTACATTTTATGTGTTCTGTTCAGaccaaaaaaaaagaagaaaaaatgaTAATGACATTTTTTATGTGAAGTTCTAAGTTTGCTTGTTAGTTTATTGAGCCAGACTTATGAAATCTTGTATTGGAAAGGGAGAGGTAAGGATGCACTGGACAGCTCAATTCTTATCCAGAGCcaattacagtagtgagtgcatacattttagtACTTTTTTTGTACTCCCAGTTGCCTCCCATATGGGCCATTCttattgaatatttatttattagCATAGTACTACAAATTACAAACTCTACTGTAATCATTCTCCACTGAAACCCAAGCTGTCTGTCTTAGCTTGTCCGGTGTGTCCCGACTCTTATGGTAAACTATGGGGGAGAGAAACATTCAGTGCAAGTTTTTGGTATAGGCATTCCTCCATTATTTTGGTTTTACCtatctttttttacatttctattcCTCCTTCATCCTCATGGTTGGTCTGTGAAATGTTATGTCATCATATAGGGATGCAGCTGCAGTCATACAAGCATCGTTATCGTTTCAAGGTAACTGCGTCTTGGACTCTGAgatgttactttaaaaaaaaaaatgttttgctgttCTCGCCGAGGTAAAAGCAGTTACTGCTGAGTGATTGCATGGTACGTGTGTATTTGTAACGCCCAccccctcaccaccaccacccaccctccAACCTGAAATCCATCATGTAATTAATTGTTTTCCTGTGACCTCTTCTTACTTATTCGGGAGTCCACGATGCATTGCCTTCAGACGCTATTGTTCTTGTCAGCACTTAAGCAGTACAGCGTAATGTCTGTGACGCTCAAAAGGTCTTTTTGTACAGCAAGATCTCTAGCCATCTCTGCAAAGTCTTTGCAGCTGCAGCCGAACTAGCGTTTATTAGTTTGgcgaaaacaaaaaaaatatgaacTAAAACTgcgataatactactactactactactactactactactactaatactcaAATACTTCAGGGATTGTTCTGCGTCTATGAATGTAGGACTCTCAGCTACATTTGTAAGACATAGTATTGTATCAATTTCTCTGTATTTTACTCATGGGAAAACCAAAACACTAGTTTCATATTTAAAAGATTTTAAAATATGGGGGGTACTTTTTCAACTAACACAAAGAGCCTTAACAAAAGGCGGGGCAGCTCAATACAAAAGTCGACGTTTTAGTTAGTATCATAATATGTTCCGAAATAGTCGCAAAGTTGTACAAAGAACTAAGACCTAAAAAAAAAGCTCATACCCAAATCCACAAACTATTTTTTAAACCAAAGCACATTTGAATGATTATGGAACAGTGTGTGGCAAAAAAAAATGATACATATGTATTTATCTCATTGTTTACATAAACTTTTACAGTTTTACAGACCTCAGTTGAGGCTCGGCCAGTCAGAGGTGTGGTTGTATGTGTTTTTTGCTTTTTCCACAGAGGTTTTGCTGCCAAAACAAAAGCTTCAGCGTCAGCGTCAACCCTGCGGCAGACTACTTCATATTTAAATTGGGGAGGGGGTTGCAGTTTTAGGGGTGCATCGCCCCCCTCTGCCAGCTGGCTTTGGGGTGACCTTGTCCCTCTGCCCTATGAACCGTCTTCAGAAGATGGGATTGGGGGGGATGGGACGGGGGTTAGGGGGGTGGGGTGGTGTTGCTTTTGCGCGAAGGGCTGGGATGACGTTAGAACTCacttaggctgcgtttacacagggaGCACAATTCAGGTttttttgcccaattattggcaaaagagctgatctgattggtcaaaagacaaatTAGTGGGAAAATTATCAGAATTGGggtgcctgtgtaaatgcagccttacTGTACCTCGGGACTTTAAAAACATTATTGAAAACTATAGTGACTGGGATTTGTTAATTGCATGTGAGCAGGTCTATTTGCTAGGGTCTTAAAGGAAAGatgaatccattttgaatgttatatcgTATTTGTGTATCTCTGACCGATATTCTATGGATTCCCGAGGTCATTTAATGTGTATCTGAGCTATTCActgttcaagcaggcagaaatcctGCCCGGTATGGATAGTTTTTCATCATATGACGCAAAACTGGAACGGCGAATAGGTCCAATACATATTAAATGACATAGAACATTTCTCAGAGATGCACATATACGATAtaacattcagaatgagtgaatcTTTCCTTTAACTGTGAATGTTCTTGATGTTTCTGCTTATTTGATGTTTGGAAAGGATGATGATGATTTCTTAGCTGCCTGTGTTCTGCCTATTTGTAAAAGCGACACAATCTTATGGCTGGCCTTGCCTCATACAAAGTTGGTGCAAACACTTATTGACAGTGTtctttttttaatcaaatgtCTATTGTTGTCAGTGATGAATGTATTTATTTCTCTGGTCCTGCACTTGCCTCCGCTAAGACTTTTCTCAGTGTGTGAGACTGAGGTTCAGGCAGGACCCTTTTTGGTTGTATTTTATTTTGAGGATTTCAAGCGGAGAAACAAAAATGAGACACAAAACATAGCCATCAACCACAATCTGTGAAGTTGTAGACTTTTTTTGGGGTGAACAGATTCATTTTTATGTCAAAATGACGACAACGTTTTATGGCATTTTTGTATCTTCTCTCTCAGCTAAAACAAACAACATGTTTTGGGTGTCAAGAGGAGTTACTCACTGTTTGGTTGGACATAGGGGTTTAAACAATTAACTTTAACCCCCTGTGTACCTCTGTCGATGTCTATCGGGCATCGTGGCTCATCTGTGGGCCATATATTGTATCTCTTCACAAACATCCTCTGCCTGGGTGTTGCCAAGCCACTGCCATTTAGAAAACCTATTCCTCCTCACCAACCTCACCCCTTTCTTTCTCCAAACGATAGAGTCGTCTctatgatgtacattttttttgtcttaaaccACTCACCGCTTATCATTTCTCTTGGACTTTTTGATTTGTTTGTGTCTatagagtgttttttttttagccTCTCGGAAGGTCCAGGCGCGCTCATATCAGTTCACATTAATTGCAGTTTACTGTTTCTCTTACCTCATCATTGTAGTGTTTCTGTGCGTTTCAAAAATATAGTATCATTATGCAGTGTTACAAAGCTTTAAGAAACACTATACAAAGTTCTGGGAATTCAAACCATGATGTTTTCCCTACTCAAAGCTTGTCTGAGTTACCTCTCTTTGTATTACTGTAGTTTCACCCATGCGATTGTCTAGTTTCACCTTTTTtctccctgttgttgttgtccccTGTCAATTCACCAGGTCCAGTCTGCGCTGTGTCTACGGAGTAGCTCCAATTTACCTAATCAAACTAAACCAAAGCTAGTTTTGAAAATGGCGTCTGGCACACCACAGTGTGTTCTAAAGCCAAGGTGTATCTTTAACCGCTAAGCTTTACTACCACTCGCTATACCCACAATGTAGCTAACCCTACACCAACCGCCCTTTGACCCCATCCTTAGCTTCCGTGACTCTGCGGCTAACGAAGCTAGTGATCGTGATTTCTCCCCATATATCTGTGACTTCAGTGTGTTCCACATATTCGACATCAGTATTTACCTCCAGGGACAAAAAAATGATTACCTCAACTCTGTGTTTACTTGCGATTTACATCTCAGCATTTTTGCAGATGCAAATGAATTTTTTActcgtttattttttattttttaccgtCCAGTTGTAACCAAAATATCACTTATTTTTGAAATAGTGTTTGTTAGTCTTGTCAAATGACTCCATGTTGATGGAAAGACGTTATTAGCTGCTAAACTAGTACTTGAAAACTTGATTAAAGAAGTTGTCCGTGAAGCAGGTATATCAAGCTTCTCTCGGATCCATGAACAGCCGCTGTTCAATAATGTATCAGGATCCAGGGGCTCAGAGGTTCTGGAATGGACATGTAGGGTCTTTGACTATGAATAATTGAGGGCTAACATTCCCtccccccttacacacacacacacacacacacacacacacacggcctaaTGCCATGATCACCTCTTGCTAGCGGCAGCACCCAGGCTGAGcccttctctccactcctctgagAGCTCGTATTCAGGTCAGAGCTGTCGCTACGGTGATGGGGCTCGCTAACTCAGTGTCATAAAAGTGTAATACAGCTGACCTCAGCACTCACAACCTTGCAGTCTTAATATACAGTGGTGAGAAAAATAAACTGTTATTTTATGATCTTTTCATTAAAAGCTTGATCGAAAAGCCAACCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583672 lncRNA upstream 47338 47103352 ~ 47103562 (+) True G514541
TU583661 lncRNA upstream 72020 47078673 ~ 47078880 (+) True G514530
TU583589 lncRNA upstream 109459 47040988 ~ 47041441 (+) True G514461
TU583585 lncRNA upstream 110706 47033873 ~ 47040194 (+) True G514457
TU583625 lncRNA upstream 132341 47018247 ~ 47018559 (+) True G514496
TU583754 lncRNA downstream 20058 47237492 ~ 47237777 (+) True G514614
TU583768 lncRNA downstream 38247 47255681 ~ 47256160 (+) True G514628
TU583779 lncRNA downstream 50185 47267619 ~ 47267921 (+) True G514639
TU583781 lncRNA downstream 51609 47269043 ~ 47269331 (+) True G514641
TU583772 lncRNA downstream 64066 47281500 ~ 47284426 (+) True G514632
XM_036979106.1 mRNA upstream 31889 47110812 ~ 47119011 (+) False si:dkey-88e18.2
NM_001124392.1 mRNA upstream 32941 47111050 ~ 47117959 (+) True si:dkey-88e18.2
XM_036980264.1 mRNA upstream 146548 46993596 ~ 47004352 (+) False LOC110526907
XR_005052126.1 mRNA upstream 146548 46993596 ~ 47004352 (+) False LOC110526907
XM_036980263.1 mRNA upstream 152233 46993596 ~ 46998667 (+) False LOC110526907
XM_036980267.1 mRNA downstream 177933 47395367 ~ 47398426 (+) True LOC118964877
XM_036981755.1 mRNA downstream 203807 47421241 ~ 47424219 (+) True LOC110526909
XM_036980271.1 mRNA downstream 233411 47450845 ~ 47494971 (+) False LOC110526910
XM_036980270.1 mRNA downstream 234830 47452264 ~ 47494971 (+) False LOC110526910
XM_036980269.1 mRNA downstream 247883 47465317 ~ 47494972 (+) False LOC110526910
TU583628 other upstream 127808 47022294 ~ 47023092 (+) True G514499
TU583592 other upstream 223186 46926842 ~ 46927714 (+) True G514464
TU582823 other upstream 249777 46900561 ~ 46901123 (+) True G513745
TU582564 other upstream 790315 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 960608 46187000 ~ 46190292 (+) True LOC110526042
TU583803 other downstream 85749 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 89004 47306438 ~ 47320050 (+) True G514665
TU583904 other downstream 296352 47513786 ~ 47516710 (+) True LOC118964881
TU584269 other downstream 732572 47950006 ~ 47952254 (+) True G515069
TU584412 other downstream 1334185 48551619 ~ 48587888 (+) False G515189

Expression Profile