RNA id: XM_036980272.1


Basic Information

Item Value
RNA id XM_036980272.1
length 2569
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110526910
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47450664 ~ 47494972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGtacagagagatgatgatgatcccCCGGGGGAGTGGAGGGAGGTTGCTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGATTGAGGAATAAACACCCGGACAGAGGATCTGTTATTGAGCTCTTGGAGAAGAATGCTCTTAAGGCTGCATTCGGCCCAGGCAACAAAGATGAGATGGAGGACTGctacccaatcctcatctcattcatgcgcaatcttactgatgaGCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTACACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACGCTGACTCACTCAAGAGGGGCGGCAGTGCAAGATCCTTCACTGCCTTTGAGCAGAAAAGActggagctcatccaggaagttaAATATTTGGCGAAGGAGATGTGTAACTGTGGCGGCAAGGCTCTCCAACCAAGGTCTAGCACACCCTCTTCcaagagttcccagacctcaCTGAAAGCCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGAAAAAGTGGTTGGACCTATGCTGGAGAACATTGAGAAGATTAGCAGCGAACGTGGCGAGGAATTGGTCTATCAAGAGTCACTACGGTCTTCTTCCTCGTTGTCATTCTCAACTGCCAAATCACAGAAGACAGAGTGGGAATTTGcactccctggcactcccattcCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACTTGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAGAAGGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATGCAATAGCTAGACTGGAGGAGCTCATATATCAGGgtaggattggtgctctctcCCGTGATCTCAGTCACCAAGTGAACCGCATAATTTCCGATagcaacttgacccctctggGACTGACAGTGGTGGCTGGAAAGAGTGCATCTGATACCATCCTTTCGaagctgaagaggaatgacaaggTGTGGAAGCCCACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTATGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTGTTGGCTAGAGTGTCTGAAGATAGAATTTCAtgctcttcttcttcatcagtaTTTAGTGACACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGGATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAAACCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTCCTCCCCTGGGCTGTCTCCTTCTGGCGCCATTATGGCAACAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCAGTGATGATGACTTCACcggcctcatcagcatgttagtAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGTCACACGCAAGTCACAAGACCTGATCCCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCtGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGAATGTTTTCTGCCATCTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAGTAACTTAAGACAATTTATTAAACGTCATTCATTGCATTAAATTGGCCTTTGTCTTCTTATGTGCTCCCGTTAACAGACTAGATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583885 lncRNA upstream 12802 47450664 ~ 47453543 (+) False LOC110526910
TU583886 lncRNA upstream 12802 47452681 ~ 47453543 (+) False LOC110526910
TU583881 lncRNA upstream 28685 47437338 ~ 47437660 (+) True G514718
TU583870 lncRNA upstream 43711 47422303 ~ 47422634 (+) True G514709
TU583833 lncRNA upstream 113176 47347637 ~ 47353169 (+) False G514685
TU584235 lncRNA downstream 48376 47543347 ~ 47543994 (+) True G515037
TU584241 lncRNA downstream 177218 47672189 ~ 47672597 (+) True LOC118964879
TU584250 lncRNA downstream 210540 47705511 ~ 47705885 (+) True G515051
TU584255 lncRNA downstream 214184 47709155 ~ 47709359 (+) True G515056
TU584256 lncRNA downstream 221067 47716038 ~ 47716868 (+) True G515057
XM_036981755.1 mRNA upstream 42126 47421241 ~ 47424219 (+) True LOC110526909
XM_036980267.1 mRNA upstream 67919 47395367 ~ 47398426 (+) True LOC118964877
XM_021606654.2 mRNA upstream 248911 47150900 ~ 47217434 (+) False LOC110526052
XM_036980265.1 mRNA upstream 248911 47151162 ~ 47217434 (+) True LOC110526052
NM_001124392.1 mRNA upstream 348386 47111050 ~ 47117959 (+) True si:dkey-88e18.2
XM_036980284.1 mRNA downstream 18661 47513632 ~ 47519474 (+) False LOC118964881
XM_036980285.1 mRNA downstream 18661 47513632 ~ 47519474 (+) False LOC118964881
XM_036980286.1 mRNA downstream 18661 47513632 ~ 47519474 (+) False LOC118964881
XM_036980281.1 mRNA downstream 44350 47539321 ~ 47542996 (+) False LOC118964880
XM_036980280.1 mRNA downstream 45179 47540150 ~ 47542996 (+) False LOC118964880
TU583803 other upstream 137101 47303183 ~ 47329244 (+) True G514662
TU583807 other upstream 146295 47306438 ~ 47320050 (+) True G514665
TU583628 other upstream 443253 47022294 ~ 47023092 (+) True G514499
TU583592 other upstream 538631 46926842 ~ 46927714 (+) True G514464
TU582823 other upstream 565222 46900561 ~ 46901123 (+) True G513745
TU583904 other downstream 18815 47513786 ~ 47516710 (+) True LOC118964881
TU584269 other downstream 455035 47950006 ~ 47952254 (+) True G515069
TU584412 other downstream 1056648 48551619 ~ 48587888 (+) False G515189
TU585107 other downstream 1453646 48948617 ~ 48954291 (+) False LOC110526072
TU585255 other downstream 1688902 49183873 ~ 49187323 (+) True edf1

Expression Profile