RNA id: TU583886


Basic Information

Item Value
RNA id TU583886
length 619
lncRNA type intronic
GC content 0.39
exon number 2
gene id LOC110526910
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47450664 ~ 47494972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAAAGTAGTGCCAAGAAGTCAGGGGAGCAGGGCACTGATACGGATGCAGGTCATAGATTTTCCCTCTGTAGTATGTTGGTTCTCTAAACCTGCATATCATAGATAAAGGTCATGTTAGAAACTGTAGTCAGTAAGAAATTTTGCATGGATAGTTTTATTCAATAGTCCTATTGTAGCAATTTTATCGAAGTATTGTATTAAGAGAAAAGCGTCTGACTTATCCTGAATTGTCCTAGTTGGTAATAACATATTTAGGATTGAGGAATAAACACCCGGACAGAGGATCTGTTATTGAGCTCTTGGAGAAGAATGCTCTTAAGGCTGCATTCGGTCCAGGCAACAAAGTAGAGATAGAGGACTGctacccaatcctcatctcattcatgcgcaatcttactgatgagtatgttagaaccatgttttgctctagcctcacatattttgtgcagaaggaaataaaaagtaagtaaaacacatttcttttttcttttctagGCAATGGCAAGTGATCTATAAAGGATTTTAAAAAACTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583881 lncRNA upstream 15021 47437338 ~ 47437660 (+) True G514718
TU583870 lncRNA upstream 30047 47422303 ~ 47422634 (+) True G514709
TU583833 lncRNA upstream 99512 47347637 ~ 47353169 (+) False G514685
TU583834 lncRNA upstream 99512 47347637 ~ 47353169 (+) True G514685
TU583832 lncRNA upstream 100133 47347461 ~ 47352548 (+) True G514684
TU583900 lncRNA downstream 37945 47491488 ~ 47492043 (+) True G514732
TU583901 lncRNA downstream 40699 47494242 ~ 47494899 (+) True LOC110526910
TU584235 lncRNA downstream 89804 47543347 ~ 47543994 (+) True G515037
TU584241 lncRNA downstream 218646 47672189 ~ 47672597 (+) True LOC118964879
TU584250 lncRNA downstream 251968 47705511 ~ 47705885 (+) True G515051
XM_036981755.1 mRNA upstream 28462 47421241 ~ 47424219 (+) True LOC110526909
XM_036980267.1 mRNA upstream 54255 47395367 ~ 47398426 (+) True LOC118964877
XM_021606654.2 mRNA upstream 235247 47150900 ~ 47217434 (+) False LOC110526052
XM_036980265.1 mRNA upstream 235247 47151162 ~ 47217434 (+) True LOC110526052
NM_001124392.1 mRNA upstream 334722 47111050 ~ 47117959 (+) True si:dkey-88e18.2
XM_036980269.1 mRNA downstream 11774 47465317 ~ 47494972 (+) False LOC110526910
XM_036980272.1 mRNA downstream 12802 47466345 ~ 47494971 (+) False LOC110526910
XM_036980284.1 mRNA downstream 60089 47513632 ~ 47519474 (+) False LOC118964881
XM_036980285.1 mRNA downstream 60089 47513632 ~ 47519474 (+) False LOC118964881
XM_036980286.1 mRNA downstream 60089 47513632 ~ 47519474 (+) False LOC118964881
TU583803 other upstream 123437 47303183 ~ 47329244 (+) True G514662
TU583807 other upstream 132631 47306438 ~ 47320050 (+) True G514665
TU583628 other upstream 429589 47022294 ~ 47023092 (+) True G514499
TU583592 other upstream 524967 46926842 ~ 46927714 (+) True G514464
TU582823 other upstream 551558 46900561 ~ 46901123 (+) True G513745
TU583904 other downstream 60243 47513786 ~ 47516710 (+) True LOC118964881
TU584269 other downstream 496463 47950006 ~ 47952254 (+) True G515069
TU584412 other downstream 1098076 48551619 ~ 48587888 (+) False G515189
TU585107 other downstream 1495074 48948617 ~ 48954291 (+) False LOC110526072
TU585255 other downstream 1730330 49183873 ~ 49187323 (+) True edf1

Expression Profile