RNA id: XM_036980282.1


Basic Information

Item Value
RNA id XM_036980282.1
length 2252
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC118964880
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47539321 ~ 47543002 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAACAAAGATGAGCTGGAGGACTGCTACCCAATCCTCATCTCGTTCATGCGCAATcttactgatgaGCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCTGCATTCTAGGGGTGACGGGCTTTTATGACAACGCTGACTCACTCAAGAGGGGTGGCAGTGCAAGATCCTTCACTGCCTTTGAGTAGAAAAGActggagctcatccaggaagttaAATATTTGGCGAAGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagagacctcaCTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGtcttcctcctcgttgtcatTCTCAACTGCCAAATCACAGAAGACAGAGTGGGAATTTGCACTCCCATTCCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAGAAGGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATCCAATAGCTAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcCCGTGATCTCAGTCACCAAGTCAACCGCATAATTTCCGATagcaacttgacccctctgggactgacagtggcggctggaaagagtgcatctgataccatcctttcgaagctgaagaggaatgacaaggTGGGGAAGCACACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTGTTGGCTAGAGTGTCTGAAGATAGAATTTCTagctcttcttcttcatcagtaTTTAGTGACACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGGATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAAACCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTCCTCCCCTCGGCTGTCTCCTTCTGGCACCATTATGGCAACAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATTCCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCAGTGATGATGACGTCACcggcctcatcagcatgttagtAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGCAAGTCACAAGACCTGATCCCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACTGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGGTACAGCAAACGTATTTAAATGAACAGTTGTGAGTAAACAATGCTATTCAGTGTAAAAATATAAAACCATCCGTTCATTCCAAAACCAATCATAAatgttgttgtgctggtgtggtaggtgtgattgttatcatcatgaggttgttcagctgtgacattttttaaaacatgtttttctctttAAATACTTAGCTATTCAAGAAGGGGAACAAGAAGGATTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583873 lncRNA upstream 20670 47425001 ~ 47519480 (+) False LOC118964881
TU583901 lncRNA upstream 45251 47494242 ~ 47494899 (+) True LOC110526910
TU583900 lncRNA upstream 48107 47491488 ~ 47492043 (+) True G514732
TU583891 lncRNA upstream 73411 47451416 ~ 47466739 (+) False LOC110526910
TU583885 lncRNA upstream 86607 47450664 ~ 47453543 (+) False LOC110526910
TU584235 lncRNA downstream 351 47543347 ~ 47543994 (+) True G515037
TU584241 lncRNA downstream 129193 47672189 ~ 47672597 (+) True LOC118964879
TU584250 lncRNA downstream 162515 47705511 ~ 47705885 (+) True G515051
TU584255 lncRNA downstream 166159 47709155 ~ 47709359 (+) True G515056
TU584256 lncRNA downstream 173042 47716038 ~ 47716868 (+) True G515057
XM_036980284.1 mRNA upstream 20676 47513632 ~ 47519474 (+) False LOC118964881
XM_036980285.1 mRNA upstream 20676 47513632 ~ 47519474 (+) False LOC118964881
XM_036980286.1 mRNA upstream 20676 47513632 ~ 47519474 (+) False LOC118964881
XM_036980269.1 mRNA upstream 45178 47465317 ~ 47494972 (+) False LOC110526910
XM_036980274.1 mRNA downstream 128335 47671331 ~ 47675493 (+) False LOC118964879
XM_036980275.1 mRNA downstream 128335 47671331 ~ 47675493 (+) False LOC118964879
XM_036980278.1 mRNA downstream 128336 47671332 ~ 47675493 (+) False LOC118964879
XM_036980279.1 mRNA downstream 128624 47671620 ~ 47675493 (+) False LOC118964879
XM_036980276.1 mRNA downstream 128987 47671983 ~ 47675493 (+) False LOC118964879
TU583904 other upstream 23440 47513786 ~ 47516710 (+) True LOC118964881
TU583803 other upstream 210906 47303183 ~ 47329244 (+) True G514662
TU583807 other upstream 220100 47306438 ~ 47320050 (+) True G514665
TU583628 other upstream 517058 47022294 ~ 47023092 (+) True G514499
TU583592 other upstream 612436 46926842 ~ 46927714 (+) True G514464
TU584269 other downstream 407010 47950006 ~ 47952254 (+) True G515069
TU584412 other downstream 1008623 48551619 ~ 48587888 (+) False G515189
TU585107 other downstream 1405621 48948617 ~ 48954291 (+) False LOC110526072
TU585255 other downstream 1640877 49183873 ~ 49187323 (+) True edf1
TU585185 other downstream 1690583 49233579 ~ 49246453 (+) False LOC110526066

Expression Profile