RNA id: XM_036980291.1


Basic Information

Item Value
RNA id XM_036980291.1
length 2548
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC118964885
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48244976 ~ 48249949 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGAATGTAACTAAGGAAAACGTCATTTAAGATAACATAGGCTATTGCAAAACAAATGTCTAATTCTCTCTATTAAGTCAATCACCAGTTTAGCTctgatatggctgtagctctatGATGTCCTTTGCAAGAATCTAATCTGACATTGACATGAAATTCCTATGTCCTTCAGGTAGtacagagagatgatgatgatcccccgagggaggggagggaggttgtTGAGGAAGAACCAGTGGCACAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACGCTGACTCACTCAAGAGGGGCGGCAGTGCAAGATCCTTCACTGCCTTTGagcagaaaagactagaactcatcCAGGAAGTTAAATATTTGGCAAAGGAGATGTGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagagttcccagacctcaCTGAAAGCCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATTTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGTCTTCTTCCTCGTTGTCATTCTCAACTGCCAAATCACAGAAGACAGAGTGGGAATTTGcactccctggcactcccattcCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTAGTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAGAAAGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATGCAATAGCTAGACTGGAGGAGCTCATATCTCAGGGTAAGATTGGTGCTCTCTCCCGTGATCTCAGTCACCAAGTCAACCGCATAATTTCTGATagcaacttgacccctctggGACTGACAGTGGCGGCTGGAAAGAGTGCATCTGATACCATCGTTTCGaagctgaagaggaatgacaaggTGGGGAAGCCCACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTTTTGGCTAGAGTGTCTGAAGATAGAATTTCATGCTCTTCTTCCTCATCAGTATTTAGTGACACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGGATTCTGATGCAGAAAGTATAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAAACCACTATATCTGATGTAGGCAATCTATTGAGTGACAAGTCCTCCCCTCGGCTGTCTCCTTCTGGCACCATTATGGCAACAAGCGAGACCTCCAATGCGGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCAGTGATGATGACGTCACCGACCTCATCAGCATGTTAGTAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGTCACACGCAAGTCACAAGACCTGATCCCCAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCTGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATCTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAGTAACTTCAGACAATTTATTAAACGTCATTCATTGCATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU584260 lncRNA upstream 522991 47722434 ~ 47722844 (+) True G515061
TU584256 lncRNA upstream 528967 47716038 ~ 47716868 (+) True G515057
TU584255 lncRNA upstream 536476 47709155 ~ 47709359 (+) True G515056
TU584250 lncRNA upstream 539950 47705511 ~ 47705885 (+) True G515051
TU584241 lncRNA upstream 573238 47672189 ~ 47672597 (+) True LOC118964879
TU584338 lncRNA downstream 40262 48290211 ~ 48290564 (+) True G515127
TU584344 lncRNA downstream 65311 48315260 ~ 48315527 (+) True G515132
TU584347 lncRNA downstream 67781 48317730 ~ 48318344 (+) True G515135
TU584349 lncRNA downstream 68938 48318887 ~ 48319224 (+) True G515137
TU584365 lncRNA downstream 81718 48331667 ~ 48331992 (+) True G515153
XM_036980299.1 mRNA upstream 9840 48035242 ~ 48235995 (+) True LOC118964888
XM_036980297.1 mRNA upstream 206038 48037087 ~ 48039797 (+) False LOC118964887
XM_036980298.1 mRNA upstream 206043 48037089 ~ 48039792 (+) True LOC118964887
XM_036980294.1 mRNA upstream 242406 47998171 ~ 48003429 (+) False LOC110512140
XR_005052135.1 mRNA downstream 22604 48272553 ~ 48277542 (+) False LOC118964891
XM_036980312.1 mRNA downstream 25171 48275120 ~ 48277535 (+) True LOC118964891
XR_005052140.1 mRNA downstream 49771 48299720 ~ 48302420 (+) False LOC110512253
XR_005052138.1 mRNA downstream 49775 48299724 ~ 48302420 (+) False LOC110512253
XR_005052139.1 mRNA downstream 50529 48300478 ~ 48302420 (+) True LOC110512253
TU584269 other upstream 293581 47950006 ~ 47952254 (+) True G515069
TU583904 other upstream 729125 47513786 ~ 47516710 (+) True LOC118964881
TU583803 other upstream 916591 47303183 ~ 47329244 (+) True G514662
TU583807 other upstream 925785 47306438 ~ 47320050 (+) True G514665
TU583628 other upstream 1222743 47022294 ~ 47023092 (+) True G514499
TU584412 other downstream 301670 48551619 ~ 48587888 (+) False G515189
TU585107 other downstream 698668 48948617 ~ 48954291 (+) False LOC110526072
TU585255 other downstream 933924 49183873 ~ 49187323 (+) True edf1
TU585185 other downstream 983630 49233579 ~ 49246453 (+) False LOC110526066
TU585313 other downstream 1055176 49305125 ~ 49307140 (+) True G516011

Expression Profile