RNA id: XM_036980305.1


Basic Information

Item Value
RNA id XM_036980305.1
length 2855
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110526080
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48354613 ~ 48393007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacagctgagtaggccgggaggtgggcctcagggatagcttcggtactggatgCCACGGTAGtacagagagatgatgatgatccccagagggaggggagggagattgCTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCACAAGACAGGAAAGGCGAAGAGGAAAAGTAGTGCCAAGAAGTCAGGGGAGCAGGGCACTGATACGGATGCAGGTCATAGATTTTCCCCTCTGTAGTATGTTGGTTCTCTAAACCTGAATATCATAGATAAAGGTCATGTTAGAAACTGGAGTCAAACTGGAGTTAGTGAGAAATGTTGCATGGATAGTTTTATTCAATAGTCCTAATGTAGCAATTTTATCGAAGTATTGTATTAAGAGAAAAGTGTCTGACTTATCCCGAATTGTCCTATATGGTAATAACATATTTAGGATTGAGGAATAAACACCCGGACAGAGGATCTGTTATTGAGCTCTTGGAGAAGAATGCTCTTAAGGCTGCATTCGGCCCAGGCAACAAAGATGAGATGGAGGACTGctacccaatcctcatctcattcatgcgcaatcttactgatgagCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACAGGCTTTTATGACAACGCTGACTCACTCAAGAGGGGCGGCAGTGCAAGATCCTTCACTGCCTTTGAGCAGAAAAGActggagctcatccaggaagtAAAATATTTGGCGAAGGAGATGTGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagagttcccagacctcaCTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATCGGTCTTTCAAGAGTCACTGCGGTCTTCCTCCTCATTGTCATTCTCAAATGCCAAATCACAGAAGACAGAGTGGGAATTTGcactccctggcactcccattcCTTCTGAGTTACCCGAGAGTCCTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAGAAGGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATCCAATAGCTAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcCCGTGATCTCAGTCACCAAGTCAACCGCATAATTTCTGATagcaacttgacccctctgggactgacagtggcggctggaaagagtgcatctgataccatcctttcgaagctgaagaggaatgacaaggTGGGGAAGCCCACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcaggAGGCCAAGGTGTTGGCTAGAGTGTCTGAAGATAGAATTTCAtgctcttcttcttcatcagtaTTTAGTGACACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGGATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAAACCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTCCTCCCTTCGGCTGTCTCCTTCTGGCGTCATTATGGCAACAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCAGTGATGATGACTTCACcggcctcatcagcatgttagtGGTGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGTCACACGCAAGTCACAAGACCTGATCCCCAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGTGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGTCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCtGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATCTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAGTAACTTAAGACAATTTATTAAACGTCATTCATTGCTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU584365 lncRNA upstream 55264 48331667 ~ 48331992 (+) True G515153
TU584349 lncRNA upstream 68032 48318887 ~ 48319224 (+) True G515137
TU584347 lncRNA upstream 68912 48317730 ~ 48318344 (+) True G515135
TU584344 lncRNA upstream 71729 48315260 ~ 48315527 (+) True G515132
TU584338 lncRNA upstream 96692 48290211 ~ 48290564 (+) True G515127
TU584413 lncRNA downstream 139370 48532377 ~ 48587888 (+) False G515189
TU584407 lncRNA downstream 181951 48574958 ~ 48583199 (+) False G515189
TU584409 lncRNA downstream 181951 48574958 ~ 48583199 (+) True G515189
TU584415 lncRNA downstream 202511 48595518 ~ 48597251 (+) False G515190
TU584416 lncRNA downstream 202511 48595518 ~ 48619629 (+) True G515190
XM_036980321.1 mRNA upstream 26907 48358853 ~ 48360349 (+) True LOC118964893
XR_002472118.2 mRNA upstream 28922 48357549 ~ 48358334 (+) True LOC110514397
XR_005052136.1 mRNA upstream 55810 48327868 ~ 48331446 (+) False LOC118936658
XM_036980315.1 mRNA upstream 55810 48329055 ~ 48331446 (+) True LOC118936658
XR_005052138.1 mRNA upstream 84836 48299724 ~ 48302420 (+) False LOC110512253
XM_036980322.1 mRNA downstream 26766 48419773 ~ 48528758 (+) False cntrl
XM_036980324.1 mRNA downstream 26766 48419773 ~ 48528758 (+) False cntrl
XM_036980323.1 mRNA downstream 26818 48419825 ~ 48528758 (+) True cntrl
XM_021606673.2 mRNA downstream 555985 48948992 ~ 49034090 (+) False LOC110526072
XM_021606674.2 mRNA downstream 570552 48963559 ~ 49034090 (+) False LOC110526072
TU584269 other upstream 435002 47950006 ~ 47952254 (+) True G515069
TU583904 other upstream 870546 47513786 ~ 47516710 (+) True LOC118964881
TU583803 other upstream 1058012 47303183 ~ 47329244 (+) True G514662
TU583807 other upstream 1067206 47306438 ~ 47320050 (+) True G514665
TU583628 other upstream 1364164 47022294 ~ 47023092 (+) True G514499
TU584412 other downstream 158612 48551619 ~ 48587888 (+) False G515189
TU585107 other downstream 555610 48948617 ~ 48954291 (+) False LOC110526072
TU585255 other downstream 790866 49183873 ~ 49187323 (+) True edf1
TU585185 other downstream 840572 49233579 ~ 49246453 (+) False LOC110526066
TU585313 other downstream 912118 49305125 ~ 49307140 (+) True G516011

Expression Profile