RNA id: XR_002472118.2


Basic Information

Item Value
RNA id XR_002472118.2
length 532
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC110514397
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48357549 ~ 48358334 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCTAGGGGTGACGGGCTTTTATGACAACGCTGACTCACTCAAGAGGGGTGGCAGTGCAAGATCCTTCACTGCCTTTGAGTAGAAAAGActggagctcatccaggaagttaAATATTTGGCGAAGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagagttcccagacctcaCTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGtcttcctcctcgttgtcatTCTCAACTGCCAAATCACAGAAGACAGAGTGGGAATTTGCACTCCCATTCCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTACTAAGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU584365 lncRNA upstream 25557 48331667 ~ 48331992 (+) True G515153
TU584349 lncRNA upstream 38325 48318887 ~ 48319224 (+) True G515137
TU584347 lncRNA upstream 39205 48317730 ~ 48318344 (+) True G515135
TU584344 lncRNA upstream 42022 48315260 ~ 48315527 (+) True G515132
TU584338 lncRNA upstream 66985 48290211 ~ 48290564 (+) True G515127
TU584413 lncRNA downstream 174043 48532377 ~ 48587888 (+) False G515189
TU584407 lncRNA downstream 216624 48574958 ~ 48583199 (+) False G515189
TU584409 lncRNA downstream 216624 48574958 ~ 48583199 (+) True G515189
TU584415 lncRNA downstream 237184 48595518 ~ 48597251 (+) False G515190
TU584416 lncRNA downstream 237184 48595518 ~ 48619629 (+) True G515190
XR_005052136.1 mRNA upstream 26103 48327868 ~ 48331446 (+) False LOC118936658
XM_036980315.1 mRNA upstream 26103 48329055 ~ 48331446 (+) True LOC118936658
XR_005052140.1 mRNA upstream 55129 48299720 ~ 48302420 (+) False LOC110512253
XM_036980321.1 mRNA downstream 519 48358853 ~ 48360349 (+) True LOC118964893
XM_036980304.1 mRNA downstream 28270 48386604 ~ 48393007 (+) False LOC110526080
XM_036980307.1 mRNA downstream 28270 48386604 ~ 48393007 (+) False LOC110526080
XM_036980309.1 mRNA downstream 28270 48386604 ~ 48393007 (+) False LOC110526080
XM_036980310.1 mRNA downstream 28270 48386604 ~ 48393007 (+) False LOC110526080
TU584269 other upstream 405295 47950006 ~ 47952254 (+) True G515069
TU583904 other upstream 840839 47513786 ~ 47516710 (+) True LOC118964881
TU583803 other upstream 1028305 47303183 ~ 47329244 (+) True G514662
TU583807 other upstream 1037499 47306438 ~ 47320050 (+) True G514665
TU583628 other upstream 1334457 47022294 ~ 47023092 (+) True G514499
TU584412 other downstream 193285 48551619 ~ 48587888 (+) False G515189
TU585107 other downstream 590283 48948617 ~ 48954291 (+) False LOC110526072
TU585255 other downstream 825539 49183873 ~ 49187323 (+) True edf1
TU585185 other downstream 875245 49233579 ~ 49246453 (+) False LOC110526066
TU585313 other downstream 946791 49305125 ~ 49307140 (+) True G516011

Expression Profile