RNA id: XM_036980317.1


Basic Information

Item Value
RNA id XM_036980317.1
length 2088
RNA type mRNA
GC content 0.52
exon number 7
gene id LOC118964892
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48375946 ~ 48387076 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attctacaatacctctttcgccatctggcttggattctctgtcgacacggccccacgccgcaccaccacgactggtctgccgacgaatactctatccgctgtgccttcaaccggcctccgtcggagggctactaactttaaacgccgtgTAGCCCGCATGCTAGCGTAATGGCGCCTTCCCTGTACCATCTACTGCTGCCTTCTGGACACTattatcacttggctacatagctgatgcctgctggactgtcgattaatcacgCGTTCCAAGAGAGCAAACAAAAAGGACTGTCATTCAGTCCAGGAACAGACTGAGATTCCCTCTACTGATGGACATTGCATAGAGCGTGAAATGGGAGGATCCCCCGGATGACCAAAATAAGGTTGTGGAGAATATGAAGGATGAAACAGAGACACATGAGACCTGCAAAGACAGGACAAGAGGCAAGGCTAAACGTAAGTCCAGTGGCGGTGCCAAGAAGACTTccgtggaggaggacagcagcattGGTGCAGccaatggagagtgattcagcagggcatgaaaaataatCTCACATTCGAGCAGCTCTCCATGCTGTGTCTGAAGATTGTTAAAGTCGTGACCCAGACAGCCCTCCGAATTCTCCTACCAGCGCTAGCTCGTATCATGGGGGTGAACCTGAGGAGTGGGGCAACCTCCCCAGAATCCCAGTGCTCTCTGACAGGGTCTGAGGATTCCTTAGGCggtctggatgagagagagaaaaggctgctgatcagtgagatgaactactggactaaggagaggaggaggaatggcaatgcaggatgccgccaaaaatccactcgcagaacctcatcaccatgctgttcgcctaagagGTCCCAGACCTCATTGCAGAGCTTGCCTGCAACTAGAGAGGCTCCCCTCATGGAGGAGCCTCTGAAGGCTCTTTTTGGGGTAACGGAAGAGAGCCTTCTGATATCCCTGGTTGAGGGTCACTCCAACCacacctcctccagctcctccgagTTGAGCTGTGCTATCGTGGGGGAGGTGGTACACCAGCTTAACTCTGGCCTCTCAGTGGCCATTGAGGCCAGCCCGGGGAGTTGCCCCCCTATTGACAGTCAGGACATAGCAGCAGGCAAGGAGGTCATTCGGGTAGCCTCGGTGCAGATCCTGGCCGAGCTACAGAGCCAAACGTCTGAGCCAGAGTGGTTAGGGTTTATCGAGCCCTTCATGGACCCTGTGACCGATGATGTGCTGGATGCCATTGTCGGCACAATGGACAAAATGGCACAGGACTTCAACATCCTATTGGATCTGGCCAAGAAGATGACAATCTTGGGGTCTAAATTTCTGACCATCTTCAATGTGACCTTGATGTTGAGTGTCCATCTGGGAAGGAAGGGACCACACACTTTCTCAAAGAGACTGGGTCCTCTACCAGTGTGGTGGCCAGAAAGATTCAGACCCTCTCTAGCCCCGACTTTCAGTCTAAAGCCCTGAAGGCGGTGAGCACCATCCTTACAAGGAAAGTCAGCAGCTCTTCTGGCATGGCTCCTTCCTCTAGGCCTTCTAGTGCTGCTCCTAGCCTTACTGAAGCCCCCCTGAATACCAGCTGcacagccctgacatctgtaacctccactgccacagtgattgttaaggcatttgtgggaggcatggagacgatagcatcatttgaaggcacatgtgaagcagttgattggccagttcctgtaaatgaccacaaaaCAGGATCTTCACAGATGATAACCTTCTCTCTAACCCACACACTCTACGGCCGTATACGAGCAAAGCTGAGGGACCTTTTAACTCTATCCACTCGAGAAGAAGGTGTGGCTAAGGATGCTTCTCTTAAGGAGTCTTCAGACACCCTGGAAAAGGCAACTGTTTCAACTGTTGAGGTCCAGTTACCCAGCACCGAACACAGTAGAGTTCCCAGAGAGAGCCAACcaataccagctctctgtctctccaatctggataccagtactcaagaagttcttagcagtgttttttccatctacaagtcagagttatcaaaagtggagagtaaatccttggccgttgtcagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU584357 lncRNA downstream 52271 48325461 ~ 48326114 (-) True G515145
TU584356 lncRNA downstream 53496 48324552 ~ 48324889 (-) True G515144
TU584353 lncRNA downstream 56925 48321053 ~ 48321460 (-) True G515141
TU584339 lncRNA downstream 87699 48290169 ~ 48290686 (-) True G515128
TU584334 lncRNA downstream 112277 48265170 ~ 48266108 (-) True G515123
TU584764 lncRNA upstream 26226 48413302 ~ 48420975 (-) True G515507
TU584844 lncRNA upstream 101598 48488674 ~ 48490587 (-) False G515583
TU584845 lncRNA upstream 102267 48489343 ~ 48490587 (-) True G515583
TU584898 lncRNA upstream 223366 48610442 ~ 48616313 (-) True G515633
TU584973 lncRNA upstream 365303 48752379 ~ 48766984 (-) True G515703
XR_005052141.1 mRNA downstream 25121 48348709 ~ 48353264 (-) True LOC118964894
XM_036981757.1 mRNA downstream 30366 48346864 ~ 48348019 (-) True LOC118965032
XM_036980314.1 mRNA downstream 59890 48297517 ~ 48318495 (-) False LOC110512142
XM_036981756.1 mRNA downstream 360531 48016304 ~ 48017854 (-) True LOC118965031
XR_005052133.1 mRNA downstream 392734 47975960 ~ 47985651 (-) False LOC110511762
XM_021606685.2 mRNA upstream 148609 48535685 ~ 48540886 (-) True rab14
XM_021606684.2 mRNA upstream 164544 48551620 ~ 48625435 (-) True c5
XM_021606683.2 mRNA upstream 238671 48625747 ~ 48630388 (-) False prdm12b
XM_021606682.2 mRNA upstream 285399 48672475 ~ 48750349 (-) False LOC110526076
XM_021606681.2 mRNA upstream 285399 48672475 ~ 48750355 (-) False LOC110526076
TU584351 other downstream 57797 48319747 ~ 48320588 (-) True G515139
TU584348 other downstream 59978 48317648 ~ 48318407 (-) True LOC110512142
TU584340 other downstream 80858 48292846 ~ 48297527 (-) False LOC110512142
TU584341 other downstream 84931 48292846 ~ 48293454 (-) False LOC110512142
TU584332 other downstream 113408 48263993 ~ 48264977 (-) True G515122
TU584888 other upstream 239962 48627038 ~ 48630305 (-) True prdm12b
TU585703 other upstream 929968 49317044 ~ 49320412 (-) True LOC110512258
TU585712 other upstream 960394 49347470 ~ 49349136 (-) True LOC110512256
TU585706 other upstream 992746 49379822 ~ 49380822 (-) True LOC118936342
TU585690 other upstream 1148139 49535215 ~ 49536285 (-) True G516320

Expression Profile