RNA id: XM_036980323.1


Basic Information

Item Value
RNA id XM_036980323.1
length 7181
RNA type mRNA
GC content 0.57
exon number 34
gene id cntrl
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48419773 ~ 48528758 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAACGTACAGCGTCGGAGGGCTTCACAATGAAAAAGGGGGTTACCCAGAGGATCTCACCAAGGAGAGGAGCCAAAGTAAGCTTAAGGATGCAGAGTCTGGGCTCACCACTGTTGGACCCTTACAGCCTTACTCCACatcccacccgtttacctctccaCCGGACAACCCACTCCAAGATGGACAGTAATCACCAGTTAGACATTACTGATGCGAATGAAGATTGGCTACTCACAGAGACTGTGGCCATTGAAAGTAGAGAAGGACGAGTCTGGTCAAAACATTCAGATGAAGAGAGTATCCAGGGAATCAGATATATCACAGAGGACCTGATCTCGAGGCTGACCAAGCAGGACAATTTAGCCTTTGTACAGTCCCTAAACCTGGCCATAACCAAGAGTGGAGACAAGAAATTCAAGTTCATTGAGAATTTGGAGAAGTGTGAGCACCTGCAGATCCTCAACGTCAGCCATAATGTCATTGAAAAAATTGAGAAGCTTGAAAAGCTGCACAACTTGCGGGAACTACATCTCTCTAACAACATAATCCATAAAATTGAGGGCCTAGAGCACATGGCAAGTCTTCAGCTTTTAAATCTTTCCAGCAATGACATTGAACATGTGCCTCTATGGCTGGCTAAGAAACTGAGATCACTCCAGACTTTAAACCTTCAACGTAACAAGATCTCTTCTCTGCATGAGCTGTCCAGACTAAAGCCTCTGAAAAACCTAACAGAGTTGACCTTGGCAGAGAACCCTATAGCCAATCTCCCCCATTACCGTCTCTTCCTGGTTTTCCACCTGAGGTCACTTGAGACACTGGACGGGCAGCCTATAagccaggaagagagagagcaggcccCCCAGCGCTTTCAAATGGAGGAGATTGAGCGTCTGGAGCAGGACCTAGAGTGTCGTGTGGCAGAGATCGGGAGGCTGCAGAGTGAGCAGGTGGCTGCAGTGGAGGAGCTTGAGCAGCAGGAGGAGCTCATTGACCAACTGCAGCTAAAGAGCCTGCAGCAACAGCACTGCCAGGCCCAGCAGGAGCAGGAGCTGGACACCAAGACAGAGCTGCTGAAACAGAAAACGGTGGAGCTGACACGAGCATGCCAGAAGCAGTATGAGCTGGAGCAGGAGTTAGCCTTTCAGAAGATCGACGCCAAGTTTGAACCATATCCCTATTACCCAGACCATgaGTTGGAGGCAGAAAGCTTGCTGGGGGAAAGCCCTTACATTGGAAAGGCACGGCACAAAAGGAACGCGGTGGCCTCAGATGGCATCCAGAGTCATCAGATGCCAACTGCAGGCCACATAGAGACAGACAACCCCAGGCAAGATGTGGCTAAGATCAGCTCCAGAGACTGCAGCCAAGAACAGACTAAAGCCGAGGAGCGTCTGCAGCAGTTGCACAGGGAGATCGAGGAGGCAGAGCAGCAGGTCCTCAGGGCCGGTGGAGAGCTTCGCCAGCTACAGGAGACACTCTCCCAGAAACAGGTGTCCGAGGCAGAGAAAGAGCAACTAAGGCAGAAGCTCCACTGGAGGATCCAGCAAGTGAGGCAGCTGAGAGATGAGGCGGAGGCTCTGGAGGGCCAGCTGGAGACACAGAGCGGGGAAATGAACCGAACCCAGGGAGAGCTGGGCCACCTCCAGGACCTACTCCACACACTGGACCCCAGGGATCCCCAGCATGCCCATGTGAAGGCTCAGGTGTCCAGTAAGAGCCAGCTGCTGGGCATGATGAGCAGGAAGCACCGGGAGCTGGAAGGCCGGCTGGACGACATGCTCTCCCGTATTGCCAAGGAGACCGAGGAGATCAAGGACCTGGAGCAGCAGCTGACCGACGGTCAGATAGCAGCCAACGAGGCTCTGAAGAGGGACCTGGAGGATATAATCTCTGGCCTGCAGGAGTACCTGAGCGGGGTGAAGGAGCAGGCCCGGCGAGCCCAGGCAGACTGCCACCACCTGCAGAGGGAGATGGAAGCCCTGCAGCGCTACCTGGATGAGAGCCAGGAGCAGCGCCGCCTGCTGGAGACAATCGCCACCACCACTGATACAGAGAAagcacagcagcagcaggagctggACGCGCTGAGGAGGGAGAACGCTGAGCTGCGGCGGACGCAGGGTCAGATCAGCGCCTACGAAGCGGAGCTAGAGAGCCAGCTGCAGGAGTGCCACACTGAGGCGGGCCAGCTAAAGGAGGAGCTGGGGCGAATGTGCAGGCTTAGCCAGTTGGAGCACGCTGCCCTGCAGGCGGCGCTGGACAAGGAAAGGCAGTCCAAGGACAATGCCCAGGCCCGACTGCAGCTAGTTGCAGAGAGGGAGCAGCAGAGTGAGGAGCTCCTGGAACAGCTCACTGCTCTACAGGAGGACAAGGCCAGTCTGGAGGAGTGTGTGGGTGCTCTGCAGAGTTCTCTAGAGCAGGCCAGGGAAACATTGCTATGCCCACAGGAGGTGCAGAGGCATCTTGAGCAGATGATAAGGACCATCACCTCAGGGCAGCCTGGCCACATCAGCAGGGTGCGCAGTGAAGGTGGCATGGTGGGCCGCAACTTGGAGCGGCTGCAGCGTGAGGTGCTGGGAGTGGTGTCTGCTGCCCAAACAGACCGGGACCAAGCCCAGCAGGGCCAGGCTCGACTCAGTCAGGAGCTGGCCTCCCTCCGAGAGCAACACAAGGCAGCCTGCCAGGCTGCAGCACAGGCCACGCAGGCAGCAAAGAAACTCGGTGAGGAGGAGATACTCCAGCTCCAGGAGGAACTGCAGGAGGCACGAGAACTCCAGAAACTGACGGGCCAGCGGCTCCAGGAGGCTGAGGACGAGCAAGAGCTTTTGCTCGCTGAGCTGGAGGAACAAGACAAACAGATGGAAGTGGGCGAGTGCCACACCCAGCAGCAGCTGCAGTCTCTGGACTTGGAGCTGCTGGAGCTAAGAAGCGCCTTCACAACGGCAGACAAGATGTCCGCCCAGCAGTTGAGAGCCACCAAAGAGCAGCTCCGCTCCTTACACACCATCGTGGAGCAAATCAACCTGGAGAGGGATGAGGATGCGGAGGAGCTGGAGGGGTCTAGGGTTCTAGCAGCCGAGATCACTCAGAACCTGACCAAAGCCGAGGCTGAGATCCAGCTGCTGCAAAAGCTACTGAAAAAGCTACTGAAATACAGGATGCATTTGATGGACCAAAATAGCCTGGGGGGTATTTCAGACAACAGCATCCAACAGCAGGTGCTGGATCGACTGAAATGGGCCTTGACCAGACAAGAGGCCCAGACTAAGCAACTGCGGGAGCAGCTCGCTCTGGCTAGAGAGAAGAACAGCGGGAACCTGGAGgagcttatgggggaggtgtgtGCTCTCAGGGAAAACCTGGTCCAGCAGAAACAGGTCTTATCCAGCCTCAGAGACCCTCACAGGACCAGGGGCCACTGGTACTATGTCCCATCATCCACAAATGCTCACAGTTTAGGTTCTCAGGGCACTCAGGATTCAGGTCTAGGGTCGCAGTATCCTACCTCGCCTGACAGGGGGCACCGCAGCAGCAGGCGCAGGGGGGTCAGCAGGGATAGAGGTCCCCAGCCTGGAGGGGGATACTGGGTCTACTCCCCTCCGGTGCACACATCCTCACACACTTACAAAGGAAGAGGTGAGGCGAGGGACAGTGGTGGTGAGAGCGATGTGGTAGACTGCAGCTCCTCTGGGATGGGGACTGGGGATCAATTCAGCCATCCCCCTGGCTCGGCCATCTACACCATGCTGCCCGACGGTTCGCCCCTGCCCCCTGGCTCTGTGATCTATGCCCCCCCTGCGGCCAGCCTGGCAGTCAGTCCCGGGACGGTCATCTACGGGTCTCCACCACAGGGGGCCCACCTGGTCTATGGCCCCAGCAGCCTCTCTGGGCCCTTGCTCGGAGTCAGCTTCCCCACCGGGGTGCTCCACTGCAACATGCCGGGGCACAAGGAGATGGAGAGGGAGCTGGCCAGGCTGGAGCAGCTGGTGGAGGAACAGCAACGTGGCAGCCAGGGcccaggggaggaggagaggcaggcccATGTGGAGAGGGATGTGCTCAGGCACCAGGATCAGCGCACACAGCTCAGACTGGAGCTCAGAGAGCTCCGGAGAGCCTTAAGCCAACTTCGCCGCCGAAGggAGATGTTGGAGGGCCGAGGGGGGTCAGAGGTTGTGGAGGAGTCCCTGCGGCACCACGGGGCTCTGCTGGAGGAGGTAGAATGTTTGGAGAAGACCTTGCTCCGCCGCAGGGCTGAACTCAGGGAGGCAGACCGACTGCTGCTGGAGGCACAGAGCAGCTTGAAGGACACAAGGACCAAGACTAAAGCGACTCTCCGGCAACACACTGAGGCCCGGAAGCGGCTCGCCGACACAGAGCGGGATCTGGAGGAGCTGGAACTCCGCACTCGGGACAGCGCCTCTTTGCTGGTGGAGGCCAAACAGCATCTCAGGGATCTGCAGGAGGATCTCCAGGAGCTGAGGAGACGCAAGGAAGAGCAGGGAGACACTCTGcagagggtggaggaggtggtggctgCCCGCGACCTGGTGTTCCAAGAGGTCAACAAGAAGGTGAAACAAGCCAGTGAGCGACTGGAGGCCCTCCGGAGCCAGATTCTGGAGACCCAGAGCAAGGAGGCCACACTGCTGGAAACCTGCAAACAGTCTGAGAGCACCCTCGCCCAACGCAGGAGCGAGCTAGAGCAACTTAACATTCAGgtGCTGCGTGGGGATGTAGAGGCGCTCCATGTCCAGAAGGGTGAGCTGGAGGCACAGCTGACTGAGAGGAGGGCTAGTGTGGCTGCACTCAAACAGCAGGGAGGTCAGGAGGAGGAGATCCTACAAAATGTCTGCTTACAGATCAACAAGCACAAAGCAGagCTGAAGCACGTTCTGGAGATGTTGCAGTTGACGGGCCAGGAGCTGCAGGCGGTGAAGCTGCAGCACGACCAGCGCCTGGACCAGCTGGAGAGGAGTCAGGAGAGCCTGCAGCAGGTGCGTGTGGAGCTGCAGGCACAGCAGCAGGAGGCTTTGCGCCAGAAGTCTGAGGGCGAGCGCCAGATGAGGCTGGCGGAGCAGGACCGGACAGAGCTGAGAGAGGAGGCGCAGGGAGTCCGGGAGCAGGTGGAGGAGGCcgccagggagagggacaggctgGAGGAGCAATGCCGGAACCTGGAGGCCAGACGGACACACGCCGACCGGTGTTTGGAGGCAGCGGAGGACGGGGCGCGGGTGGCTGAGGCTGAGCTGAACAGGCTGCATGCAGAGCTGGGCCTGCTGAGACAGGAGCAGagacaggctcacacacacagGCAGAAGATGGAACGAGACACGGCAGTCACTCAGCAACAGCTATACCGGGAGTCTGAGATCTTCAGTGGTCAAAAGGAGCAGGTGGAAGAGAAAAAACAGCAATTAGAGATGCTGGAGGAGGAGGTGCGAGTGTTGGTCATGGTCCGGGACAGTGTGGCGCGGGAGGAGCAGGAGGCGAGGAAGCAGCTGGAGGAGGATGAACGAAGAGCTGAGCAGCTGGAGCACCGGCTGATGGAGCTGCACACGGACCTGGCTGAGAGGCAGACTCAACTACAAtgtgcgcGGGGGCTGCAATGTGAGGCCAAAGAGCGTGAGGAGAGGCAGCGGCAGAGGCTCCAGGAACTGCAGGCCCAGAGCCAGGTTGAGGAGAGCTCTCTGGCCCAGCACACACTCAGACTGGAGCAGGTCAACACTGCAGTGGCCGACATGGAGGACAGGAGCCGGCGAGTAGTGACCAGGGACCACAAGCAGTGTGCCGTCCTGCAAGAGCACGTGCCTCTGCTTGGGCAGGAGCTGTATGAGAGGGAGGCCCCGCTGCAGGAGCGGGCTGAGGAGCTGCAGGAGGAGCTGGGGGCGTGTCGGGCGGAGGTGCAGTGtatgcaggaggagaggaggagtgccgAGAGcaggctgcaggcccagaagaGCTGCGAGCACGCCCACCAAGAGAAACCAAAGGAGACAGAGCTGCTGCGCAGTCAAGAGGGGGGCGAGAGCCGCCTGAGGGAGATCAAGGAAGCCATGCGTTGGCTGAAGACTGACGTCAAGGCAGAACTGAACAGTGGGATGGTAGAGCTGCCCCTCGCGCCTGACCAAGATCCCTCCTCCTCAGACACTGACGACCACAAAGAGAACTACCCCCTCTACTCAACCCCAGCCGTGCCTAGGCCAGCCTGCAATCCTACTTGGAGGGGAGAGGTGCTAAGAGAGAGACTTCGACAGCAGGAGGACCTCCTGAAGGCTCAGCTGGGCAGACGCATGTGGTCTCAGGAAGAGTTTCTGAGCCAGCGCAGGCAGCAGACCGAGGGGAGTCTATTGGGGCTGAGCAGACGAGTGGACAAGCTGGGCCAACTGCTCGGCAACTGCACCTCGGActccctctctctgagctccTCTGAGCCCCCACTTAAACAAGGCTGTCCAGATGCTCCAGAGAAATGGCGTCTCCAGGAGAGTGCGCAGGCGGAGGTGTCCCACAAACCTGTGAGACTGGATCCTACACTACTTGAGAAGTAGCCAGGCCCCAGGCTGTGTCCAGGCCTCTGACAGCCTCCCAGCCTcagtgtagggtgaagttgcccctagatgctgataTTGGGTCATCTTTGCATTTCCCCACAaatggttaggattgggggagggaagctgatcctagatcactgcctaggggaaacttcaccttAGAGCGTGTGGCATGCCTAAACATGATCCACCATCACAGCAATATTTACCCAAGGTGAAGAGGAACAGTCTCTCATCCATCCAAAGTGGACTTGGCCTGTTAGCAGGATCATCAagcaagataaaaaaaaatgaatatatatatatgaaactaTGCATTTGTGTGGCTTAAGTATTGTATCCTTAACATAGTTTCCACTATCTCAACTAGTTTGAGAAGTTTTTTGGGCAAATTCAATTACTTTTTTGCCTATGAATATGCTTGTTTTTGTATGACATATtggtatatttttttactttttaatatCAATGTCTCATTTATTTACAAGCTTTCCAGTCACGGTAGCATTTAATTCCTAGCATCCGGCTAATGCATGAAAATTCTGTTTGTTACcatcaatatgttttgtggacttatgttgctctccggttttgtgattaaacaaaggtgtggttgaa

Function

GO: NA

KEGG:

id description
K16770 CNTRL; centriolin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU584365 lncRNA upstream 87833 48331667 ~ 48331992 (+) True G515153
TU584349 lncRNA upstream 100601 48318887 ~ 48319224 (+) True G515137
TU584347 lncRNA upstream 101481 48317730 ~ 48318344 (+) True G515135
TU584344 lncRNA upstream 104298 48315260 ~ 48315527 (+) True G515132
TU584338 lncRNA upstream 129261 48290211 ~ 48290564 (+) True G515127
TU584413 lncRNA downstream 3619 48532377 ~ 48587888 (+) False G515189
TU584407 lncRNA downstream 46200 48574958 ~ 48583199 (+) False G515189
TU584409 lncRNA downstream 46200 48574958 ~ 48583199 (+) True G515189
TU584415 lncRNA downstream 66760 48595518 ~ 48597251 (+) False G515190
TU584416 lncRNA downstream 66760 48595518 ~ 48619629 (+) True G515190
XM_036980310.1 mRNA upstream 26818 48386604 ~ 48393007 (+) False LOC110526080
XM_021606673.2 mRNA downstream 420234 48948992 ~ 49034090 (+) False LOC110526072
XM_021606674.2 mRNA downstream 434801 48963559 ~ 49034090 (+) False LOC110526072
XM_021606672.2 mRNA downstream 533692 49062450 ~ 49063259 (+) True cmlc1
XM_021606671.2 mRNA downstream 547899 49076657 ~ 49134305 (+) True qsox2
XM_021606668.2 mRNA downstream 617369 49146127 ~ 49156002 (+) True LOC110526069
TU584269 other upstream 467571 47950006 ~ 47952254 (+) True G515069
TU583904 other upstream 903115 47513786 ~ 47516710 (+) True LOC118964881
TU583803 other upstream 1090581 47303183 ~ 47329244 (+) True G514662
TU583807 other upstream 1099775 47306438 ~ 47320050 (+) True G514665
TU583628 other upstream 1396733 47022294 ~ 47023092 (+) True G514499
TU584412 other downstream 22861 48551619 ~ 48587888 (+) False G515189
TU585107 other downstream 419859 48948617 ~ 48954291 (+) False LOC110526072
TU585255 other downstream 655115 49183873 ~ 49187323 (+) True edf1
TU585185 other downstream 704821 49233579 ~ 49246453 (+) False LOC110526066
TU585313 other downstream 776367 49305125 ~ 49307140 (+) True G516011

Expression Profile