RNA id: XM_021606682.2


Basic Information

Item Value
RNA id XM_021606682.2
length 3398
RNA type mRNA
GC content 0.43
exon number 18
gene id LOC110526076
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48672475 ~ 48750372 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATGTGATTATAAACCTAACATTAACCGAACTGATAACCCtgtgcctaaccttaaattaagacaaaagtgcatttttttattatttttttacaatagccaattctgactttgtggctgtggtaattaTTTACAACCGAGAAGTCTGGGTGGAGATGATGATGGCGGAGTTGGTGCAGGGACAGGCCTCCGTTGCTCAGTCCGGAATGAAAGCTGACGGCTTCGCCCACGCTTTACATCGGGCCCGACAGATGGCAGGAAAAATGAGGAATGAGCAGATTTCTCACCTAAACAGTTCCCCACCTATTGTAGACCCCTCCATGTATGGCTACGGGGACCAAAAGCGATCGGTGGAAGACGGAGTAGGTAACCAGCTGGGAGCCATGGTACATCAAAGGGCTGTTTTGACAGAAGACTTCAAAGTGCCTGATAGAATGGTTGGATTCATCATAGGCAGAGGAGGTGAACAAATTACGAGAATCCAGCTGGAGTCCGGGTGCAAAATTCAAATTGCCTCTGAGAGTGGCGGTATGATGGACAGAGCCTGCTCCCTCAATGGAACCCCAGAGAGCATTGAgcaggccaaaagaATGCTTGGGCAGATAGTGGACCGCTGTCGAAACAGCCCTGGGTTCCACAGCGAGGCTGAGGACAACAGCTCAGTCCACGAGATGCTCATCCCAGCCAGCAAAGTGGGCCTAGTCATCGGGAGGGGAGGGGACACCATCAAGCAACTGCAGGAGAGAATAGgagtgaagatgatgatgatccaGGACGGCCCCATGCCCACCGGGGTGGACAAACCCCTGAGAATCACTGGGGATCCCTACAAGGTCCATCAAGCGCGGGAATTGGTGATCGAGATCATCCGCGACAAATACCAGGGAGACTTGCACAGTGGCCGAAACGACTTTGCGTCAAGATTGGGTGGAAGTACTTTGGATGTGGCAGTACCCAGGTTTGCAGTGGGGATTGTCATCGGCAGGAGTGGCGAGATGATCAAGAAGATCCAGGGAGATTCCGGAGTGAGGATCCAATTCAAACCAGATGATGGCATCAGCCCAGAGCGCATCGCCCAAGTGATGGGACAACCAGACAGGTGTCAGCACGCTGTCCAACTCATCAACGAGCTCACCCAAacagcacagGAACGTGATGGCTTTGGAAGCTCTGGAGGACCAAGAGGAAGGGGACGAGGCCGCGGGGACTGGGTCATGGGCTCACCAGGGGGACTGCAGGAGGTCACCTACACAATACTTGCAGACAAGTGTGGTCTGGTGATCGGCAAAGGTGGAGATACCATCAAGAGCATCAACCAGCAGTCTGGAGCCCACGTGGAGCTGCAGAGGAACCCCCCTCCCAACACCGACCCCAATGTTCGCGTCTTCTCCATCAGAGGCACCCCGCAACAGATGGAGGTAGCATGCCAGCTCATTGACGACAAGATCGGAGGCTCAGGAATAGTGAGCAATGGTAGTTTTGGGTTGAGCCCTTACACTCAAAGCCCTGCAACTCATCAAAATTGTGGCAGTGGAGCCCAGACTTTAATGACAGGGGGATGGGGGACGGCTTATCAAACATGGCAGCCTCAAGGCCAGCAAGACCACAGTCACAATGGATCCCAGGCAGGCCAGATGGACTACTCTACAGCTTGGGAGCAGTATTATAAAAAGCTAGGTCAGACATCTCAGCAGCAGAGCTCACTCCCAGAATACAGTGCAGCTATGGCAGAATATTACAGGCAGCAGGGAGCGTACCTCTGGCCGGGTGCACAGGCAACCCAGGGCCCAGGTCTTCAGGAGCATTAGAGTGGACACCCATCTAATTAAGACTTTGGAATCATTGAGACGAAAAGAGAGCTATTAACAGTACTATTGAGGTTTCTAAAGTATATTTTCAACACTTTGCGGCGTACCTTTCCTTTTTGTAATGCATTCGCTGTAGAATAACTAAACCTAAAAACTGATATTTTACTTGGCAATTTTGGGATACACTCGTCTTAAGTATACTTTTTTTTATGTATCGCCTTGTCTTTGAACAAGATGTAGTATAATCTATTTTGTCTAGTTTTTGCAATAAAATGGTATTGGCTTAGCAGTCTTGAGGATTGGGTATAATGACAGGTGTGTTTTTGTGAACAATAATGTTTTAAGCATGCGTTTGCTTTTTGATTTATGTTTTTACGTAGAACATTTTTAATTTTGAGAGATTGAAATGTAATGTGTGATTGTTGGGAAAAAGTTTTAATTTCTAACTATATTCCTGGTATGGTATCTAATTTCTTATTCAATCATGTTATTCTTCTGTGTCATTGTTTTGTTTTCTGTTCAGGAAGGGTTGGTTATCTAATTTCGGTTTTGAGACACATGCTGATAAATTATTAAGTTATTATTCCTACATTAGACATCCTAGTTTTAAGCCTAAGTGTAATAAATGCTTATCAAAATGATATTTTAGAGAGCTGGGATATTATGAGTTTGATTTAATCTTATGTATGTATCCTCATGTACATGGGTATTTAAGTATATTTGTTGAATAAGGATTGTTAGTGTAATATTCACAATGATGCTCTCCCAATTTTATGTATTCACTGCTAATATGGTAAATGTTGTTTTGAAATTTGATGTTGCATCTCTCACCAAGTGCAAATATAAACCCAGCATGTCTTCTGTGCTCAAGACTGCGAAGCCGCTTTCATTCTACCTGttcaaaatatttgtttttgtatGGCAAATGTAAGtggatttatttatatttttgaaccGCATAGCTTCCACAGTATCCCAACCAGTACACTTTGTTTCttgctaacataattgttttTGTTTAAGCAAGAATGTATGCTATGATTCATTAAATGATTACtccctacaattttttttctgatgaCAAGACATACATTTACCTATGAATTTTGTGTACATTTTCTCATATGCACAGATAACCTTGTATTTAAAAGTCAAGTAATTTGTTTGTTTCTAGGGCAGTTGATATCATTTGGGCTATTGTAATGCACATTCCTGTTTTTAGATGTTTGCTGCCTTTTCAATGGCAAATTAGTTTAACGGCGGAGTTACCCAAAGAGCCATATCACTAGACTAACAAGTTCATCTTTCTGTAGCATACAGTTTGATTTAGATACCTTAAGTATAAAGTTTTATATGCCATAAACATGAAAAGAGACTATACATTCTCACTTGTTTATTTCTATGCTTTCTTAGTTGTTTGACTCAGTAATTTGCCACAATTGCTTTTGTGGTGAAAATATAGAATCTTTATTTTTGTACTGTTAAAAAGTTTATCTGTATAATGATTTGTCAATCTCCCTAACAGTTTTCTTTGTTGCTGTATACCGTGCTTCAATTAAATCTACTCTCTCAAGATTGAGTATGAATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU584898 lncRNA downstream 56162 48610442 ~ 48616313 (-) True G515633
TU584844 lncRNA downstream 181888 48488674 ~ 48490587 (-) False G515583
TU584845 lncRNA downstream 181888 48489343 ~ 48490587 (-) True G515583
TU584764 lncRNA downstream 251500 48413302 ~ 48420975 (-) True G515507
TU584357 lncRNA downstream 346361 48325461 ~ 48326114 (-) True G515145
TU584973 lncRNA upstream 2030 48752379 ~ 48766984 (-) True G515703
TU585045 lncRNA upstream 121642 48871991 ~ 48872300 (-) True G515772
TU585055 lncRNA upstream 140585 48890934 ~ 48891735 (-) True G515782
TU585057 lncRNA upstream 142380 48892729 ~ 48892931 (-) True G515783
TU585059 lncRNA upstream 144110 48894459 ~ 48895568 (-) True G515785
XM_021606683.2 mRNA downstream 42087 48625747 ~ 48630388 (-) False prdm12b
XM_021606684.2 mRNA downstream 47040 48551620 ~ 48625435 (-) True c5
XM_021606685.2 mRNA downstream 131589 48535685 ~ 48540886 (-) True rab14
XM_036980317.1 mRNA downstream 285399 48378385 ~ 48387076 (-) False LOC118964892
XR_005052137.1 mRNA downstream 285400 48380873 ~ 48387075 (-) False LOC118964892
XM_036980341.1 mRNA upstream 148995 48899344 ~ 48911180 (-) False surf4l
XM_021606675.2 mRNA upstream 148995 48899344 ~ 48924373 (-) False surf4l
XM_036980340.1 mRNA upstream 148995 48899344 ~ 48944876 (-) False surf4l
XM_021606676.2 mRNA upstream 158784 48909133 ~ 48924387 (-) False surf4l
XM_036980336.1 mRNA upstream 444839 49195188 ~ 49219526 (-) False LOC110526068
TU584888 other downstream 42170 48627038 ~ 48630305 (-) True prdm12b
TU584725 other downstream 292169 48375946 ~ 48380306 (-) True LOC118964892
TU584351 other downstream 351887 48319747 ~ 48320588 (-) True G515139
TU584348 other downstream 354068 48317648 ~ 48318407 (-) True LOC110512142
TU584340 other downstream 374948 48292846 ~ 48297527 (-) False LOC110512142
TU585703 other upstream 566695 49317044 ~ 49320412 (-) True LOC110512258
TU585712 other upstream 597121 49347470 ~ 49349136 (-) True LOC110512256
TU585706 other upstream 629473 49379822 ~ 49380822 (-) True LOC118936342
TU585690 other upstream 784866 49535215 ~ 49536285 (-) True G516320
TU585710 other upstream 872700 49623049 ~ 49623743 (-) True LOC110515945

Expression Profile