RNA id: XM_021606668.2


Basic Information

Item Value
RNA id XM_021606668.2
length 5162
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110526069
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49146127 ~ 49156002 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATTGTGCATAGAGAACCTCACCCTCTTCTACCACCTCAGTCTCGaatggagaaggagagaattgGAGTGCTTCTGTTCTTTCTGATGCCCTTTCAGCCGGTCCTGTCTCCAGTGAAGACCTGCTCTCATCATAATGTCCCAGCTCCTGCATGTGGAGATCCCCAACTTTGGCAGCTCTGTGCTGGAGAGTCTGAACGAGCAGCGCCTGCAGGGCCAGTACTGTGATGTGGCCGTCATGGTCAATGGCCAGTCCTTTAAGGCCCACCGCGCCGTGCTGGCCGCCAGCAGCCTCTACTTCAGAGACCTGTTCAGCGGCAGCTCTCAGGGCATGTTTGAACTACCCTCCTCGGTCACCCCGTCCTGCTTCCAGCAGATCCTCTCCTTCTGCTACACGGGCAGGCTGACCATGGCCGCCAGCGAACAGCTCGTGCTCATGTACACGGCCGGCTACCTCCAGATCCAGAACATTGTGGAGCGCAGGATGAATCTCATGCTAAAGgccaactctccacactgcgatTCCCAGACGGCCACCACCGAGGATCTGGGCTTCGAACCGTCAAGCCCCAACTACAGCCATCCGGCCCTGTTGCCAGGCGACACACTAATGGCCACTTGTAGGATTAAGCAGGAAAGATGTGAGTCCCCAATGAGTGAGGAGCACACAGCTAAGGGCCTCAAGGGCTACGCCACAAGGAGCAGTGCACAATGTTACATGAGGGCAGGAGGGAGTGGTATTGTACCCGGAGTACAGTCGTACCCTATGGCCTCTGGGGAGCGCTCTAGCCCAGGGGCCTCCAGCCTCCCAGCCACTGACAGCCCCACTTCCCACCCCAACGAGGAGGAGTTTGAAGAGGAGTTCTACGGCAGCAGCAATACAAACGGGGTTTATGGGCAGAATTATGGGCACCCAACCAACTCCTACAGCATGCAGGATAAGTTGGACGTGTTGTCCCTACCTCTGGCCACTGAGAGGCGCTGTGTGCTGATCGGCAGGGACACGATGGCGCTGCCACCCAGTCTCATCAGCCAGATTGGCTACCGCTGCCACCCCACCCTGTACACAGAAGGGGATCCCGGGGAGAAGGTGGAGCTGGTGGGAGGTTCTGGTGTATATATGACTCGTGGCCAGTTGATGAACTGTCATTTGTGTGCCGGCATTAAGCACAAAGTGCTGCTGCGTCGGCTGCTCGCCACCTTCTTTGACAGAAACACACTGGCCAATAGCTGTGGAACTGGAATTCGCTCCTCCACCAATGATCCCAGCCGAAAACCGTTGGACAACCGAGTCCTAAACACTGTCAAACTCTACTGTCAGAACTTTGCACCTAATTTCAAAGAGAGTGAGATGAATGTGATTGCAGCCGACATGTGCACAAACGCCCGGCGTGTGCGAAAGCGCTGGCTGCCCAAGATCCAGTCCATGCTCCCGGAGACCAAGGAGAGCAGCAGAAGCTCCTGCAAGGGGCAGTCCAGGGCCTGTGCGTCATCCCAGACAAGTGTGCTGTCGTCGGCCTTGCCCTTTGAAATGGACTTCAGACACCTGACGTCGTCCTACCTGACCCTAGAACAGCAGCTCTACGCCGAGAGCCGCAAAGAGACtctcctacctcacctgcagtTTGTGGGAACCACCAGGTCAGAGGAGGGGGCTGCAGCAGCAGAGCTGGCTGAGTCCGAGACAGAGCATGGGCCTGAGCGAGGAGGACGAGGAGCCCAGGCGGGCCAAGGAACTGAACGCCTCTCTGAGTGCTTGGAGAGAGCAGCTGAGGTCCCATCCCTCAGCACACAGGGTAAGGCTGGGGCCGGGGGCTCCCCCTCCTCCAAACACACAGGACAGCAGGAGGACAAGTTGCTAGAAGATGACCAGTGAGGTCCTAACATCCCTCTTCTCCACCAATCTATATATGTCTATGTATGTGTATTTAAGCTTTGGCTACTCAACTGCATGTAACATCGCAGAAATTACAGTTCAGACATGCACTTAAAAGAAAACTGATGAAAAAATGAAATGCAGTATAATAATTCcctgaaggagaagagaagaattGCTACTACTGTGGCACCGTGATGGACTCGCTGATAGATAAGGTGGGTGAACAGACATGGGGCGAATGAGGAAAAACGTTGAGTTTTTAGTTGTCGTCTGTCGTTTGTACTCTTGTAAAGcctaccctctactacaccactggTCATAATGTACGACTCACTACTTCTACCAAAAGTTCGGtaccactttattttacagtacagaaATTACCTGGTATTTTACATAGAAATAGAAATACATAGAAATTGCATTGTAAAATGCAAGTAAACAATTATAATAACCTATAACCGACATTTGTTTATTTGAGGCTCAATGCAAGTAGCACCACTCAGCACCATTTGGTACCAGGTAGTTACCAATAGTTTAAAGGTCTTTGAAGTAAGTAGCAGAAAGTACCCATTAATACCTCACAATTTCCTAGAAAATACCAAGCAATTTCTgttccttaaaataaagtgcagCAAACACTTCTTTATTGAATTTTGTTTTCTAATTGTTCTGCTTCCACCTAATTACCTCTAATGTGACATTATGCTCATCTATATAATCAACTGTTGGCACTGAATAAGGTAAACATTACCAATAACAAAATGGGGAGGCCACACAATATTGCTTCTATATTCCTTTATTTTAATCAGCTTCAAACTGTCGGTCCACTGCGATGCATTGAAGGTATAGCCCCAGTGAGATTGATCTGTTCTTTACCTTATATCCAGTACTGTTTTGATATTACTGATTGGAATTTGTTGAAAGATTCATCCACCCAGGACTCATCCATCAACATTGAGGAATATACACCATCAATCAGAGGCTTCATTAGGAAATGTGTTGTTCCCACAATATTGTTCCCACAATAGCAATCCGGACATGCCCCAACTAAAAACCCTGGATCAACAGAGATCCCCGTACCATGCTCAGAGCCCATACTGCAGCATTCAATGTCAGCAGAACGGACCCTGATGACTCGGTGGGGCGCGATGCGTACAAGGCAAGCAGTTACGAGCTCCTCATCCATTAGTGACGCAAAAAGACAGTGCAGACTCAAACTTTAATTGATGTTCGACAACCTAGACTCGCGACACGTGGCAAGgactacagactacaaaggcaAATCTAGCTGTGTGGTGCCCACCGAAGCTTCCCTCCCAGATGAGCTTAACACATTCTATGGTCGCTTCGAGGCAGACAATACCGAGCCATCCAGGAAGACACTCGCTGCTCCGGACAACCAAGTGCTTTCACTCTGAGGCTGACGTGAAGAAAACTCTCAAGAGTGAATACTCACAAAACCGCCAGACCAGTTGGCATCCCTGACCACATTCTCAGAgtgtgtgctgaccagctggTGAGCGTCTTCTCAGAcatcttcaacctgtccctggcTGTAGTCCTCACCTGCTTCAAGGAGACTACCATTGTCTCAGTGCCCACGAAAAACAAGGTGACATTCCCAAATGACTACCGACCAGTCTCACTCACCCcagtcatcatgaagtgcctcgagaggctggtcatggcccacatcaaggCCAGCATTCCAGGCACACTGGACCCACGGCAATTATcctaccgctccaacagatccatggAAGATTCCATTTCCATCGCTATTCACACGGCCCTAACACAtcaggacaagaggaacacctatgtgagaatcctgttcattgactacagttcagcattcaacactattgttccctcAAAGctcgacaccaagctcagagcacTGGGTCTGGGCAGCACcatctgcaactgggtcctggacttcctgacgggcagaccACAGGAACAACATCTCTTCTATACTAACTCTTAACACAGGGGACCCTCAGGGGTATCTCCTAggccctctgctgtactccctattcacccatgactgcgtggctttGCATGACACCAACTCCATCAAGTTTGCTCACGACACCACAATTGTAGGCCTGGGAACCAACAATGACGAGTGAGTCTATTGGGAGGTTGTAAGTAAACCGGCATTGTGGTGCTCCCAATTCAACTGTGGGAGCATGGCAGCTCTCATCACCAGGCAACAAAAAGAGCTGGCCACTTCTATACGAGAGATTGTTTGTGAGGAGATTACCTCTGCCCTCGTCTTTCAATTAAAACCGATTATTGAATCATTGGCTGTGCTCACTGCTAACGTGGATACCTATTCTAAAGTGGAAAGCCTGGAGAAGGCAACCAATGTGACAGAGGTGTGACTCCATGACCTGGAAGCAGCGCAAGCTAAGTTGGAAGGGATAATCAAACTCCTGTAAATTCAATGTGCAGGTCACAGGACTTGAAACTGGTGTGGAGGCGGGCAACCCAACTTCCTTCATGAGCAAAATCTTTTCTATGATCTGTTCGGGCGGGAGGTCCCATGTCGCTGATTAAAACAGTGAGCACTGCAGAGGTTAACTCCAACGGCTCTCACTGTATGATTGTACGGATCCACAGCTTTGAAGTCAAGCGGAGACTTGTTCACCTTGTAGTGTAATCTGGGGGTTTGACTATGCAGGGAAGAGGATCAACATCTACCCAGACTTGAGTGCCAAGATGCTAAAACACAGGGAAACCTACGACAAGGTGCGATACCAGCTACGCAAGCTAAACCTGAGATTCGGCTTCAACCACTCGACAAAACTCCTCTTGACCTTCCAGAACACCACACATGTTTCCCACTGCCAAGGAAGCTCAAGACTTCTTCAAGAAGCACATCAAACCCAACACACAACGGGACAAGCCAACAGAAGGAACCTCATGACTGGGACATTTTTTAAGGTATGCTATCCATGCACAATCACGCGGCCTAGCCTATGGCTATGATGCTGTCCTCAGCATAAGACAATGATGACACCACCTAATGTTTGGGTACAAGGAACAATAATAATATTATTGCTGAGCATTAAACTTGTTATAAGTATATTGCCTATGGTCCTGGACATTTACACAGTAATGGCACCATACCAATTAATGAGCAATGGACAATATATGGAGGTTTACACATACTGGAACTGCTTTCTTGTGGCTACAGTGTATTGAATCCCTTTGGGCAGAATATGGCAAAtaacagtatacagtgccttgcgaaagtattcggcccccttgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585221 lncRNA upstream 37512 49108346 ~ 49108615 (+) True G515932
TU585102 lncRNA upstream 108585 49033823 ~ 49037542 (+) True LOC110526072
TU585116 lncRNA upstream 187735 48957890 ~ 48958392 (+) True G515839
TU585113 lncRNA upstream 190706 48955109 ~ 48955421 (+) True G515836
TU585098 lncRNA upstream 204344 48940586 ~ 48941783 (+) True G515821
TU585177 lncRNA downstream 5792 49161794 ~ 49162460 (+) True G515897
TU585285 lncRNA downstream 73167 49229169 ~ 49230070 (+) True G515985
TU585286 lncRNA downstream 76509 49232511 ~ 49232995 (+) True G515986
TU585186 lncRNA downstream 77577 49233579 ~ 49260632 (+) False LOC110526066
TU585187 lncRNA downstream 86208 49242210 ~ 49246453 (+) True LOC110526066
XM_021606671.2 mRNA upstream 11822 49076657 ~ 49134305 (+) True qsox2
XM_021606672.2 mRNA upstream 82868 49062450 ~ 49063259 (+) True cmlc1
XM_021606673.2 mRNA upstream 112037 48948992 ~ 49034090 (+) False LOC110526072
XM_021606674.2 mRNA upstream 112037 48963559 ~ 49034090 (+) False LOC110526072
XM_036980324.1 mRNA upstream 617369 48419773 ~ 48528758 (+) False cntrl
XM_021604927.2 mRNA downstream 27289 49183291 ~ 49187334 (+) False edf1
XM_021604928.2 mRNA downstream 27859 49183861 ~ 49187334 (+) False edf1
NM_001124502.1 mRNA downstream 28187 49184189 ~ 49186710 (+) False edf1
XM_036980343.1 mRNA downstream 32173 49188175 ~ 49189807 (+) True LOC118964897
XR_005052142.1 mRNA downstream 86037 49242039 ~ 49246500 (+) False LOC110526066
TU585107 other upstream 191836 48948617 ~ 48954291 (+) False LOC110526072
TU584412 other upstream 558239 48551619 ~ 48587888 (+) False G515189
TU584269 other upstream 1193873 47950006 ~ 47952254 (+) True G515069
TU583904 other upstream 1629417 47513786 ~ 47516710 (+) True LOC118964881
TU583807 other upstream 1826077 47306438 ~ 47320050 (+) True G514665
TU585255 other downstream 27871 49183873 ~ 49187323 (+) True edf1
TU585185 other downstream 77577 49233579 ~ 49246453 (+) False LOC110526066
TU585313 other downstream 149123 49305125 ~ 49307140 (+) True G516011
TU585370 other downstream 230512 49386514 ~ 49387212 (+) False LOC118964898
TU585910 other downstream 593186 49749188 ~ 49751749 (+) True barhl1a

Expression Profile