RNA id: TU585255


Basic Information

Item Value
RNA id TU585255
length 1700
RNA type TUCP
GC content 0.41
exon number 5
gene id edf1
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49183291 ~ 49187334 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGTTCAAAACAACAGGGAGCTCGGTCCGTCTGAGCGTTCAAACAATTGGGAGCTCGGTCCGTCTGAGCGTTCAAACAattgggaactcggaaaaaaaacTAAATCCAACTGGGAAAATCGATTTGAACGTGCATTTTTCCGAGTTCCTAGTTATTTTGAATGCGGCATTAGTATTGCTCAATGCGCTAAGGACGGTATGTGACGTCATTATAGAACTCTTGTGAACGGCGGGGTCGACTATTCGATAGAGTACGGTACTTTCATAGTTACCACGTTATATTAGCGTGCGCTAAAGTTACCGTATAGCATACTGACTTTACATGTGTATCTAAACCAACCTGTTTATACGTTGTTTCCATCAAGGTAAACTCAAAAAACATGGCAGAAAGTGACTGGGATACCGTGACCATACTGAGGAAGAAGGGACCAACTGTCGCACAGTCGAAGTCGAAAcagGCTGTTGCAGCAGCTCAAAGACGTGGAGAAGAACTTGATACTACTAAGAAATgggcTGCAGGACAAAACAAACAGCACGTGATCACCAAGAATACAGCAAAGCttgacagagagactgaagagcTTCAACACCAAAGAGTATCTCTGGAGGTGGGCAAGGTCATCCAACAAGGCCGGCAAAATCAGGGCCTGACGCAGAAAGACCTGGCCACTaaAATCAATGAAAAACCACAGATAATTGGAGACTACGAATCTGGAAAGGCTATCCCCAATAACCAAGTCATGGGAAAGATTGAAAGAGCAATTGGACTGAAGTTGCGTGGGAAGGACATTGGGAAACCCTTGGAGGCAGTCCCAAAGAAAAAGTGAAGACAATGCCTTGAAGCAGCTTAGCCTACAGTACTACCACCACAGCTGACAGCCTTGTCAATTCTCTGGAGCGCTAGCACATCTTAACCAGTTTATTTAATTAACTTGGGCTGCTACTTTCTTTTACTGCCCTGATTCCAGTAATGAATGTCAAGCTTGTGGGACCTGATTTAAACAATATTGCATAACTAAATTCAAATTTATTGTGGTTTTGTTTTGCATCTGGCTTTCAGCAAACCACAAGAAGAGAATTGATTTTACTGAATGGTTTTAATGTCTTCAAAACTATATTCTATACTCCCTGAGGTCTGTCTCCATGCTTGTTCTGTGGTCATTCCCTTTCAACTAGACATGGATAAGTTTGGCATTTTGGCTAAAATGTTTTAATGTAGTGTATGCTTTTCAAACATTTATGCAAGAATGCTGCTTTCATGGGCTGATATCTCCTGAAAAAGTGATTTATTCAATCTCAAGGGCCTAAAAGGTTAAACTAAATAATAAAATATGGTATATGGAACCATTGTGTCTTAATCAATCATTCTACTTCGATAGATTTTTGGACACAATGTTGCCATATACAGCTTCTGTCTTTGGTACTGCTTGTCTACCAGATGCACATTTGTTTTGTCATGTTTTTTTTGCTGGATGTGTAGCCTGCATTTTCCGTACTATATGCACATGTGCTTTGCACGGTTGCAGAATGGTTTGCAACATGGAGAAGATCATTTTCGCCCTGGTCGACCAAAGCAAATGATTATAACAGATTAAAGTTATTCTCCTATTGACCTACTGGTTACATAGGCTGGGTGAGATACTAACAGACTGGTGTGCATTACAACAATtcattactgaacaaaaataaacataaCATGG

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585177 lncRNA upstream 21413 49161794 ~ 49162460 (+) True G515897
TU585221 lncRNA upstream 75258 49108346 ~ 49108615 (+) True G515932
TU585102 lncRNA upstream 146331 49033823 ~ 49037542 (+) True LOC110526072
TU585116 lncRNA upstream 225481 48957890 ~ 48958392 (+) True G515839
TU585113 lncRNA upstream 228452 48955109 ~ 48955421 (+) True G515836
TU585285 lncRNA downstream 41846 49229169 ~ 49230070 (+) True G515985
TU585286 lncRNA downstream 45188 49232511 ~ 49232995 (+) True G515986
TU585186 lncRNA downstream 46256 49233579 ~ 49260632 (+) False LOC110526066
TU585187 lncRNA downstream 54887 49242210 ~ 49246453 (+) True LOC110526066
TU585306 lncRNA downstream 83291 49270614 ~ 49290474 (+) True G516006
XM_021606668.2 mRNA upstream 27871 49146127 ~ 49156002 (+) True LOC110526069
XM_021606671.2 mRNA upstream 49568 49076657 ~ 49134305 (+) True qsox2
XM_021606672.2 mRNA upstream 120614 49062450 ~ 49063259 (+) True cmlc1
XM_021606673.2 mRNA upstream 149783 48948992 ~ 49034090 (+) False LOC110526072
XM_021606674.2 mRNA upstream 149783 48963559 ~ 49034090 (+) False LOC110526072
XM_036980343.1 mRNA downstream 852 49188175 ~ 49189807 (+) True LOC118964897
XR_005052142.1 mRNA downstream 54716 49242039 ~ 49246500 (+) False LOC110526066
XR_005052148.1 mRNA downstream 115342 49302665 ~ 49303356 (+) True LOC118964903
XM_036980345.1 mRNA downstream 174707 49362030 ~ 49386751 (+) False LOC118964898
XM_036980344.1 mRNA downstream 174708 49362031 ~ 49365894 (+) False LOC118964898
TU585107 other upstream 229582 48948617 ~ 48954291 (+) False LOC110526072
TU584412 other upstream 595985 48551619 ~ 48587888 (+) False G515189
TU584269 other upstream 1231619 47950006 ~ 47952254 (+) True G515069
TU583904 other upstream 1667163 47513786 ~ 47516710 (+) True LOC118964881
TU583803 other upstream 1854629 47303183 ~ 47329244 (+) True G514662
TU585185 other downstream 46256 49233579 ~ 49246453 (+) False LOC110526066
TU585313 other downstream 117802 49305125 ~ 49307140 (+) True G516011
TU585370 other downstream 199191 49386514 ~ 49387212 (+) False LOC118964898
TU585910 other downstream 561865 49749188 ~ 49751749 (+) True barhl1a
TU586434 other downstream 1533078 50720401 ~ 50735236 (+) True LOC118964907

Expression Profile